Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3718 and Pf6N2E2_3719 overlap by 8 nucleotides Pf6N2E2_3719 and Pf6N2E2_3720 overlap by 4 nucleotides Pf6N2E2_3720 and Pf6N2E2_3721 are separated by 4 nucleotides
Pf6N2E2_3718 - Putative histidine ammonia-lyase protein, at 4,331,270 to 4,332,808
_3718
Pf6N2E2_3719 - FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein, at 4,332,801 to 4,333,226
_3719
Pf6N2E2_3720 - FIG027190: Putative transmembrane protein, at 4,333,223 to 4,333,816
_3720
Pf6N2E2_3721 - FIG021862: membrane protein, exporter, at 4,333,821 to 4,336,139
_3721
Position (kb) 4333
4334 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4332.243 kb on + strand, within Pf6N2E2_3718 at 4332.244 kb on - strand, within Pf6N2E2_3718 at 4332.264 kb on - strand, within Pf6N2E2_3718 at 4332.274 kb on + strand, within Pf6N2E2_3718 at 4332.352 kb on - strand, within Pf6N2E2_3718 at 4332.365 kb on + strand, within Pf6N2E2_3718 at 4332.366 kb on - strand, within Pf6N2E2_3718 at 4332.366 kb on - strand, within Pf6N2E2_3718 at 4332.807 kb on - strand at 4332.891 kb on + strand, within Pf6N2E2_3719 at 4332.891 kb on + strand, within Pf6N2E2_3719 at 4332.892 kb on - strand, within Pf6N2E2_3719 at 4332.892 kb on - strand, within Pf6N2E2_3719 at 4332.892 kb on - strand, within Pf6N2E2_3719 at 4332.892 kb on - strand, within Pf6N2E2_3719 at 4332.901 kb on - strand, within Pf6N2E2_3719 at 4332.901 kb on - strand, within Pf6N2E2_3719 at 4332.948 kb on + strand, within Pf6N2E2_3719 at 4332.948 kb on + strand, within Pf6N2E2_3719 at 4332.949 kb on - strand, within Pf6N2E2_3719 at 4333.741 kb on + strand, within Pf6N2E2_3720 at 4333.742 kb on - strand, within Pf6N2E2_3720 at 4333.749 kb on + strand, within Pf6N2E2_3720 at 4334.376 kb on - strand, within Pf6N2E2_3721 at 4334.769 kb on + strand, within Pf6N2E2_3721 at 4334.769 kb on + strand, within Pf6N2E2_3721 at 4334.769 kb on + strand, within Pf6N2E2_3721 at 4334.769 kb on + strand, within Pf6N2E2_3721
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,332,243 + Pf6N2E2_3718 0.63 -0.2 4,332,244 - Pf6N2E2_3718 0.63 -1.6 4,332,264 - Pf6N2E2_3718 0.65 +0.1 4,332,274 + Pf6N2E2_3718 0.65 -0.0 4,332,352 - Pf6N2E2_3718 0.70 -0.1 4,332,365 + Pf6N2E2_3718 0.71 -0.3 4,332,366 - Pf6N2E2_3718 0.71 -0.3 4,332,366 - Pf6N2E2_3718 0.71 +2.6 4,332,807 - -0.2 4,332,891 + Pf6N2E2_3719 0.21 +0.4 4,332,891 + Pf6N2E2_3719 0.21 +1.1 4,332,892 - Pf6N2E2_3719 0.21 -0.4 4,332,892 - Pf6N2E2_3719 0.21 -0.6 4,332,892 - Pf6N2E2_3719 0.21 +0.1 4,332,892 - Pf6N2E2_3719 0.21 -2.1 4,332,901 - Pf6N2E2_3719 0.23 -0.4 4,332,901 - Pf6N2E2_3719 0.23 -2.4 4,332,948 + Pf6N2E2_3719 0.35 -0.8 4,332,948 + Pf6N2E2_3719 0.35 +1.4 4,332,949 - Pf6N2E2_3719 0.35 +0.9 4,333,741 + Pf6N2E2_3720 0.87 -1.6 4,333,742 - Pf6N2E2_3720 0.87 -2.0 4,333,749 + Pf6N2E2_3720 0.89 -0.5 4,334,376 - Pf6N2E2_3721 0.24 -0.8 4,334,769 + Pf6N2E2_3721 0.41 +0.4 4,334,769 + Pf6N2E2_3721 0.41 -0.4 4,334,769 + Pf6N2E2_3721 0.41 -1.6 4,334,769 + Pf6N2E2_3721 0.41 +0.2
Or see this region's nucleotide sequence