Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3720

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3718 and Pf6N2E2_3719 overlap by 8 nucleotidesPf6N2E2_3719 and Pf6N2E2_3720 overlap by 4 nucleotidesPf6N2E2_3720 and Pf6N2E2_3721 are separated by 4 nucleotides Pf6N2E2_3718 - Putative histidine ammonia-lyase protein, at 4,331,270 to 4,332,808 _3718 Pf6N2E2_3719 - FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein, at 4,332,801 to 4,333,226 _3719 Pf6N2E2_3720 - FIG027190: Putative transmembrane protein, at 4,333,223 to 4,333,816 _3720 Pf6N2E2_3721 - FIG021862: membrane protein, exporter, at 4,333,821 to 4,336,139 _3721 Position (kb) 4333 4334Strain fitness (log2 ratio) -2 -1 0 1 2at 4332.243 kb on + strand, within Pf6N2E2_3718at 4332.244 kb on - strand, within Pf6N2E2_3718at 4332.264 kb on - strand, within Pf6N2E2_3718at 4332.274 kb on + strand, within Pf6N2E2_3718at 4332.352 kb on - strand, within Pf6N2E2_3718at 4332.365 kb on + strand, within Pf6N2E2_3718at 4332.366 kb on - strand, within Pf6N2E2_3718at 4332.366 kb on - strand, within Pf6N2E2_3718at 4332.807 kb on - strandat 4332.891 kb on + strand, within Pf6N2E2_3719at 4332.891 kb on + strand, within Pf6N2E2_3719at 4332.892 kb on - strand, within Pf6N2E2_3719at 4332.892 kb on - strand, within Pf6N2E2_3719at 4332.892 kb on - strand, within Pf6N2E2_3719at 4332.892 kb on - strand, within Pf6N2E2_3719at 4332.901 kb on - strand, within Pf6N2E2_3719at 4332.901 kb on - strand, within Pf6N2E2_3719at 4332.948 kb on + strand, within Pf6N2E2_3719at 4332.948 kb on + strand, within Pf6N2E2_3719at 4332.949 kb on - strand, within Pf6N2E2_3719at 4333.741 kb on + strand, within Pf6N2E2_3720at 4333.742 kb on - strand, within Pf6N2E2_3720at 4333.749 kb on + strand, within Pf6N2E2_3720at 4334.376 kb on - strand, within Pf6N2E2_3721at 4334.769 kb on + strand, within Pf6N2E2_3721at 4334.769 kb on + strand, within Pf6N2E2_3721at 4334.769 kb on + strand, within Pf6N2E2_3721at 4334.769 kb on + strand, within Pf6N2E2_3721

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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4,332,243 + Pf6N2E2_3718 0.63 -0.2
4,332,244 - Pf6N2E2_3718 0.63 -1.6
4,332,264 - Pf6N2E2_3718 0.65 +0.1
4,332,274 + Pf6N2E2_3718 0.65 -0.0
4,332,352 - Pf6N2E2_3718 0.70 -0.1
4,332,365 + Pf6N2E2_3718 0.71 -0.3
4,332,366 - Pf6N2E2_3718 0.71 -0.3
4,332,366 - Pf6N2E2_3718 0.71 +2.6
4,332,807 - -0.2
4,332,891 + Pf6N2E2_3719 0.21 +0.4
4,332,891 + Pf6N2E2_3719 0.21 +1.1
4,332,892 - Pf6N2E2_3719 0.21 -0.4
4,332,892 - Pf6N2E2_3719 0.21 -0.6
4,332,892 - Pf6N2E2_3719 0.21 +0.1
4,332,892 - Pf6N2E2_3719 0.21 -2.1
4,332,901 - Pf6N2E2_3719 0.23 -0.4
4,332,901 - Pf6N2E2_3719 0.23 -2.4
4,332,948 + Pf6N2E2_3719 0.35 -0.8
4,332,948 + Pf6N2E2_3719 0.35 +1.4
4,332,949 - Pf6N2E2_3719 0.35 +0.9
4,333,741 + Pf6N2E2_3720 0.87 -1.6
4,333,742 - Pf6N2E2_3720 0.87 -2.0
4,333,749 + Pf6N2E2_3720 0.89 -0.5
4,334,376 - Pf6N2E2_3721 0.24 -0.8
4,334,769 + Pf6N2E2_3721 0.41 +0.4
4,334,769 + Pf6N2E2_3721 0.41 -0.4
4,334,769 + Pf6N2E2_3721 0.41 -1.6
4,334,769 + Pf6N2E2_3721 0.41 +0.2

Or see this region's nucleotide sequence