Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3702

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3701 and Pf6N2E2_3702 overlap by 4 nucleotidesPf6N2E2_3702 and Pf6N2E2_3703 are separated by 14 nucleotidesPf6N2E2_3703 and Pf6N2E2_3704 are separated by 70 nucleotides Pf6N2E2_3701 - Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family, at 4,316,185 to 4,317,189 _3701 Pf6N2E2_3702 - FIG00953907: hypothetical protein, at 4,317,186 to 4,317,485 _3702 Pf6N2E2_3703 - Oxidoreductase, short chain dehydrogenase/reductase family, at 4,317,500 to 4,318,249 _3703 Pf6N2E2_3704 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 4,318,320 to 4,319,081 _3704 Position (kb) 4317 4318Strain fitness (log2 ratio) -2 -1 0 1 2at 4316.274 kb on + strandat 4316.274 kb on + strandat 4316.274 kb on + strandat 4316.274 kb on + strandat 4316.274 kb on + strandat 4316.275 kb on - strandat 4316.279 kb on - strandat 4316.323 kb on + strand, within Pf6N2E2_3701at 4316.431 kb on + strand, within Pf6N2E2_3701at 4316.431 kb on + strand, within Pf6N2E2_3701at 4316.431 kb on + strand, within Pf6N2E2_3701at 4316.432 kb on - strand, within Pf6N2E2_3701at 4316.432 kb on - strand, within Pf6N2E2_3701at 4316.432 kb on - strand, within Pf6N2E2_3701at 4316.602 kb on + strand, within Pf6N2E2_3701at 4316.602 kb on + strand, within Pf6N2E2_3701at 4316.602 kb on + strand, within Pf6N2E2_3701at 4316.602 kb on + strand, within Pf6N2E2_3701at 4316.602 kb on + strand, within Pf6N2E2_3701at 4316.602 kb on + strand, within Pf6N2E2_3701at 4316.603 kb on - strand, within Pf6N2E2_3701at 4316.603 kb on - strand, within Pf6N2E2_3701at 4316.769 kb on + strand, within Pf6N2E2_3701at 4316.800 kb on + strand, within Pf6N2E2_3701at 4317.325 kb on + strand, within Pf6N2E2_3702at 4317.325 kb on + strand, within Pf6N2E2_3702at 4317.325 kb on + strand, within Pf6N2E2_3702at 4317.325 kb on + strand, within Pf6N2E2_3702at 4317.465 kb on + strandat 4317.465 kb on + strandat 4317.465 kb on + strandat 4317.755 kb on - strand, within Pf6N2E2_3703at 4317.865 kb on + strand, within Pf6N2E2_3703at 4317.865 kb on + strand, within Pf6N2E2_3703at 4317.865 kb on + strand, within Pf6N2E2_3703at 4317.865 kb on + strand, within Pf6N2E2_3703at 4317.865 kb on + strand, within Pf6N2E2_3703at 4317.865 kb on + strand, within Pf6N2E2_3703at 4317.865 kb on + strand, within Pf6N2E2_3703at 4317.865 kb on + strand, within Pf6N2E2_3703at 4317.865 kb on + strand, within Pf6N2E2_3703at 4317.865 kb on + strand, within Pf6N2E2_3703at 4317.865 kb on + strand, within Pf6N2E2_3703at 4317.865 kb on + strand, within Pf6N2E2_3703at 4317.866 kb on - strand, within Pf6N2E2_3703at 4317.866 kb on - strand, within Pf6N2E2_3703at 4317.866 kb on - strand, within Pf6N2E2_3703at 4317.866 kb on - strand, within Pf6N2E2_3703at 4317.866 kb on - strand, within Pf6N2E2_3703at 4317.866 kb on - strand, within Pf6N2E2_3703at 4317.866 kb on - strand, within Pf6N2E2_3703at 4318.174 kb on - strand, within Pf6N2E2_3703at 4318.284 kb on + strandat 4318.378 kb on + strandat 4318.378 kb on + strandat 4318.379 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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4,316,274 + -1.0
4,316,274 + -0.6
4,316,274 + -0.6
4,316,274 + +0.1
4,316,274 + -0.0
4,316,275 - -0.4
4,316,279 - +1.0
4,316,323 + Pf6N2E2_3701 0.14 -0.1
4,316,431 + Pf6N2E2_3701 0.24 +0.2
4,316,431 + Pf6N2E2_3701 0.24 -0.0
4,316,431 + Pf6N2E2_3701 0.24 -1.4
4,316,432 - Pf6N2E2_3701 0.25 +0.1
4,316,432 - Pf6N2E2_3701 0.25 +0.8
4,316,432 - Pf6N2E2_3701 0.25 +1.3
4,316,602 + Pf6N2E2_3701 0.41 +0.2
4,316,602 + Pf6N2E2_3701 0.41 +1.2
4,316,602 + Pf6N2E2_3701 0.41 +0.1
4,316,602 + Pf6N2E2_3701 0.41 +0.8
4,316,602 + Pf6N2E2_3701 0.41 -0.1
4,316,602 + Pf6N2E2_3701 0.41 -1.9
4,316,603 - Pf6N2E2_3701 0.42 -0.5
4,316,603 - Pf6N2E2_3701 0.42 +1.1
4,316,769 + Pf6N2E2_3701 0.58 +0.0
4,316,800 + Pf6N2E2_3701 0.61 +1.0
4,317,325 + Pf6N2E2_3702 0.46 -0.6
4,317,325 + Pf6N2E2_3702 0.46 -0.1
4,317,325 + Pf6N2E2_3702 0.46 -1.3
4,317,325 + Pf6N2E2_3702 0.46 -0.7
4,317,465 + +0.5
4,317,465 + +1.1
4,317,465 + -0.8
4,317,755 - Pf6N2E2_3703 0.34 +1.3
4,317,865 + Pf6N2E2_3703 0.49 +0.1
4,317,865 + Pf6N2E2_3703 0.49 +0.1
4,317,865 + Pf6N2E2_3703 0.49 +0.3
4,317,865 + Pf6N2E2_3703 0.49 -0.2
4,317,865 + Pf6N2E2_3703 0.49 +0.5
4,317,865 + Pf6N2E2_3703 0.49 +2.1
4,317,865 + Pf6N2E2_3703 0.49 +0.6
4,317,865 + Pf6N2E2_3703 0.49 -0.8
4,317,865 + Pf6N2E2_3703 0.49 +0.3
4,317,865 + Pf6N2E2_3703 0.49 -0.2
4,317,865 + Pf6N2E2_3703 0.49 +1.4
4,317,865 + Pf6N2E2_3703 0.49 +2.5
4,317,866 - Pf6N2E2_3703 0.49 -1.0
4,317,866 - Pf6N2E2_3703 0.49 -0.8
4,317,866 - Pf6N2E2_3703 0.49 -0.2
4,317,866 - Pf6N2E2_3703 0.49 +1.0
4,317,866 - Pf6N2E2_3703 0.49 +0.2
4,317,866 - Pf6N2E2_3703 0.49 +1.1
4,317,866 - Pf6N2E2_3703 0.49 -0.5
4,318,174 - Pf6N2E2_3703 0.90 +0.4
4,318,284 + +1.9
4,318,378 + +0.2
4,318,378 + +0.7
4,318,379 - -1.1

Or see this region's nucleotide sequence