Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3701 and Pf6N2E2_3702 overlap by 4 nucleotides Pf6N2E2_3702 and Pf6N2E2_3703 are separated by 14 nucleotides Pf6N2E2_3703 and Pf6N2E2_3704 are separated by 70 nucleotides
Pf6N2E2_3701 - Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family, at 4,316,185 to 4,317,189
_3701
Pf6N2E2_3702 - FIG00953907: hypothetical protein, at 4,317,186 to 4,317,485
_3702
Pf6N2E2_3703 - Oxidoreductase, short chain dehydrogenase/reductase family, at 4,317,500 to 4,318,249
_3703
Pf6N2E2_3704 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 4,318,320 to 4,319,081
_3704
Position (kb) 4317
4318 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4316.274 kb on + strand at 4316.274 kb on + strand at 4316.274 kb on + strand at 4316.274 kb on + strand at 4316.274 kb on + strand at 4316.275 kb on - strand at 4316.279 kb on - strand at 4316.323 kb on + strand, within Pf6N2E2_3701 at 4316.431 kb on + strand, within Pf6N2E2_3701 at 4316.431 kb on + strand, within Pf6N2E2_3701 at 4316.431 kb on + strand, within Pf6N2E2_3701 at 4316.432 kb on - strand, within Pf6N2E2_3701 at 4316.432 kb on - strand, within Pf6N2E2_3701 at 4316.432 kb on - strand, within Pf6N2E2_3701 at 4316.602 kb on + strand, within Pf6N2E2_3701 at 4316.602 kb on + strand, within Pf6N2E2_3701 at 4316.602 kb on + strand, within Pf6N2E2_3701 at 4316.602 kb on + strand, within Pf6N2E2_3701 at 4316.602 kb on + strand, within Pf6N2E2_3701 at 4316.602 kb on + strand, within Pf6N2E2_3701 at 4316.603 kb on - strand, within Pf6N2E2_3701 at 4316.603 kb on - strand, within Pf6N2E2_3701 at 4316.769 kb on + strand, within Pf6N2E2_3701 at 4316.800 kb on + strand, within Pf6N2E2_3701 at 4317.325 kb on + strand, within Pf6N2E2_3702 at 4317.325 kb on + strand, within Pf6N2E2_3702 at 4317.325 kb on + strand, within Pf6N2E2_3702 at 4317.325 kb on + strand, within Pf6N2E2_3702 at 4317.465 kb on + strand at 4317.465 kb on + strand at 4317.465 kb on + strand at 4317.755 kb on - strand, within Pf6N2E2_3703 at 4317.865 kb on + strand, within Pf6N2E2_3703 at 4317.865 kb on + strand, within Pf6N2E2_3703 at 4317.865 kb on + strand, within Pf6N2E2_3703 at 4317.865 kb on + strand, within Pf6N2E2_3703 at 4317.865 kb on + strand, within Pf6N2E2_3703 at 4317.865 kb on + strand, within Pf6N2E2_3703 at 4317.865 kb on + strand, within Pf6N2E2_3703 at 4317.865 kb on + strand, within Pf6N2E2_3703 at 4317.865 kb on + strand, within Pf6N2E2_3703 at 4317.865 kb on + strand, within Pf6N2E2_3703 at 4317.865 kb on + strand, within Pf6N2E2_3703 at 4317.865 kb on + strand, within Pf6N2E2_3703 at 4317.866 kb on - strand, within Pf6N2E2_3703 at 4317.866 kb on - strand, within Pf6N2E2_3703 at 4317.866 kb on - strand, within Pf6N2E2_3703 at 4317.866 kb on - strand, within Pf6N2E2_3703 at 4317.866 kb on - strand, within Pf6N2E2_3703 at 4317.866 kb on - strand, within Pf6N2E2_3703 at 4317.866 kb on - strand, within Pf6N2E2_3703 at 4318.174 kb on - strand, within Pf6N2E2_3703 at 4318.284 kb on + strand at 4318.378 kb on + strand at 4318.378 kb on + strand at 4318.379 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,316,274 + -1.0 4,316,274 + -0.6 4,316,274 + -0.6 4,316,274 + +0.1 4,316,274 + -0.0 4,316,275 - -0.4 4,316,279 - +1.0 4,316,323 + Pf6N2E2_3701 0.14 -0.1 4,316,431 + Pf6N2E2_3701 0.24 +0.2 4,316,431 + Pf6N2E2_3701 0.24 -0.0 4,316,431 + Pf6N2E2_3701 0.24 -1.4 4,316,432 - Pf6N2E2_3701 0.25 +0.1 4,316,432 - Pf6N2E2_3701 0.25 +0.8 4,316,432 - Pf6N2E2_3701 0.25 +1.3 4,316,602 + Pf6N2E2_3701 0.41 +0.2 4,316,602 + Pf6N2E2_3701 0.41 +1.2 4,316,602 + Pf6N2E2_3701 0.41 +0.1 4,316,602 + Pf6N2E2_3701 0.41 +0.8 4,316,602 + Pf6N2E2_3701 0.41 -0.1 4,316,602 + Pf6N2E2_3701 0.41 -1.9 4,316,603 - Pf6N2E2_3701 0.42 -0.5 4,316,603 - Pf6N2E2_3701 0.42 +1.1 4,316,769 + Pf6N2E2_3701 0.58 +0.0 4,316,800 + Pf6N2E2_3701 0.61 +1.0 4,317,325 + Pf6N2E2_3702 0.46 -0.6 4,317,325 + Pf6N2E2_3702 0.46 -0.1 4,317,325 + Pf6N2E2_3702 0.46 -1.3 4,317,325 + Pf6N2E2_3702 0.46 -0.7 4,317,465 + +0.5 4,317,465 + +1.1 4,317,465 + -0.8 4,317,755 - Pf6N2E2_3703 0.34 +1.3 4,317,865 + Pf6N2E2_3703 0.49 +0.1 4,317,865 + Pf6N2E2_3703 0.49 +0.1 4,317,865 + Pf6N2E2_3703 0.49 +0.3 4,317,865 + Pf6N2E2_3703 0.49 -0.2 4,317,865 + Pf6N2E2_3703 0.49 +0.5 4,317,865 + Pf6N2E2_3703 0.49 +2.1 4,317,865 + Pf6N2E2_3703 0.49 +0.6 4,317,865 + Pf6N2E2_3703 0.49 -0.8 4,317,865 + Pf6N2E2_3703 0.49 +0.3 4,317,865 + Pf6N2E2_3703 0.49 -0.2 4,317,865 + Pf6N2E2_3703 0.49 +1.4 4,317,865 + Pf6N2E2_3703 0.49 +2.5 4,317,866 - Pf6N2E2_3703 0.49 -1.0 4,317,866 - Pf6N2E2_3703 0.49 -0.8 4,317,866 - Pf6N2E2_3703 0.49 -0.2 4,317,866 - Pf6N2E2_3703 0.49 +1.0 4,317,866 - Pf6N2E2_3703 0.49 +0.2 4,317,866 - Pf6N2E2_3703 0.49 +1.1 4,317,866 - Pf6N2E2_3703 0.49 -0.5 4,318,174 - Pf6N2E2_3703 0.90 +0.4 4,318,284 + +1.9 4,318,378 + +0.2 4,318,378 + +0.7 4,318,379 - -1.1
Or see this region's nucleotide sequence