Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3632

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3631 and Pf6N2E2_3632 are separated by 392 nucleotidesPf6N2E2_3632 and Pf6N2E2_3633 are separated by 242 nucleotides Pf6N2E2_3631 - HAMP domain protein, at 4,228,393 to 4,229,907 _3631 Pf6N2E2_3632 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 4,230,300 to 4,230,941 _3632 Pf6N2E2_3633 - Topoisomerase IV subunit A (EC 5.99.1.-), at 4,231,184 to 4,233,448 _3633 Position (kb) 4230 4231Strain fitness (log2 ratio) -2 -1 0 1 2at 4230.212 kb on + strandat 4230.283 kb on + strandat 4230.283 kb on + strandat 4230.283 kb on + strandat 4230.284 kb on - strandat 4230.284 kb on - strandat 4230.284 kb on - strandat 4230.284 kb on - strandat 4230.416 kb on + strand, within Pf6N2E2_3632at 4230.416 kb on + strand, within Pf6N2E2_3632at 4230.416 kb on + strand, within Pf6N2E2_3632at 4230.416 kb on + strand, within Pf6N2E2_3632at 4230.416 kb on + strand, within Pf6N2E2_3632at 4230.416 kb on + strand, within Pf6N2E2_3632at 4230.417 kb on - strand, within Pf6N2E2_3632at 4230.614 kb on + strand, within Pf6N2E2_3632at 4230.615 kb on - strand, within Pf6N2E2_3632at 4230.651 kb on + strand, within Pf6N2E2_3632at 4230.651 kb on + strand, within Pf6N2E2_3632at 4230.652 kb on - strand, within Pf6N2E2_3632at 4230.652 kb on - strand, within Pf6N2E2_3632at 4230.652 kb on - strand, within Pf6N2E2_3632at 4230.652 kb on - strand, within Pf6N2E2_3632at 4230.816 kb on + strand, within Pf6N2E2_3632at 4230.816 kb on + strand, within Pf6N2E2_3632at 4230.836 kb on - strand, within Pf6N2E2_3632at 4230.864 kb on + strand, within Pf6N2E2_3632at 4230.865 kb on - strand, within Pf6N2E2_3632at 4230.919 kb on + strandat 4230.920 kb on - strandat 4230.920 kb on - strandat 4230.984 kb on - strandat 4230.984 kb on - strandat 4231.034 kb on + strandat 4231.034 kb on + strandat 4231.035 kb on - strandat 4231.035 kb on - strandat 4231.062 kb on - strandat 4231.100 kb on + strandat 4231.100 kb on + strandat 4231.100 kb on + strandat 4231.101 kb on - strandat 4231.157 kb on - strandat 4231.157 kb on - strandat 4231.177 kb on - strandat 4231.177 kb on - strandat 4231.177 kb on - strandat 4231.186 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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4,230,212 + -1.6
4,230,283 + +0.3
4,230,283 + -1.3
4,230,283 + -0.1
4,230,284 - -0.3
4,230,284 - -1.0
4,230,284 - -0.3
4,230,284 - -1.0
4,230,416 + Pf6N2E2_3632 0.18 -1.1
4,230,416 + Pf6N2E2_3632 0.18 +1.1
4,230,416 + Pf6N2E2_3632 0.18 +0.7
4,230,416 + Pf6N2E2_3632 0.18 -0.5
4,230,416 + Pf6N2E2_3632 0.18 -0.3
4,230,416 + Pf6N2E2_3632 0.18 -0.7
4,230,417 - Pf6N2E2_3632 0.18 -0.3
4,230,614 + Pf6N2E2_3632 0.49 -0.1
4,230,615 - Pf6N2E2_3632 0.49 -0.6
4,230,651 + Pf6N2E2_3632 0.55 -0.2
4,230,651 + Pf6N2E2_3632 0.55 -0.5
4,230,652 - Pf6N2E2_3632 0.55 +0.0
4,230,652 - Pf6N2E2_3632 0.55 -0.9
4,230,652 - Pf6N2E2_3632 0.55 -0.8
4,230,652 - Pf6N2E2_3632 0.55 -1.4
4,230,816 + Pf6N2E2_3632 0.80 -1.1
4,230,816 + Pf6N2E2_3632 0.80 +0.6
4,230,836 - Pf6N2E2_3632 0.83 -1.1
4,230,864 + Pf6N2E2_3632 0.88 -1.6
4,230,865 - Pf6N2E2_3632 0.88 -0.2
4,230,919 + -0.9
4,230,920 - +0.3
4,230,920 - -1.0
4,230,984 - -1.8
4,230,984 - -2.0
4,231,034 + +0.7
4,231,034 + +0.1
4,231,035 - -0.3
4,231,035 - -1.3
4,231,062 - +1.2
4,231,100 + -0.7
4,231,100 + +0.7
4,231,100 + -1.5
4,231,101 - +1.5
4,231,157 - +2.1
4,231,157 - +1.8
4,231,177 - +0.8
4,231,177 - +2.3
4,231,177 - +2.7
4,231,186 - +0.8

Or see this region's nucleotide sequence