Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3631 and Pf6N2E2_3632 are separated by 392 nucleotides Pf6N2E2_3632 and Pf6N2E2_3633 are separated by 242 nucleotides
Pf6N2E2_3631 - HAMP domain protein, at 4,228,393 to 4,229,907
_3631
Pf6N2E2_3632 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 4,230,300 to 4,230,941
_3632
Pf6N2E2_3633 - Topoisomerase IV subunit A (EC 5.99.1.-), at 4,231,184 to 4,233,448
_3633
Position (kb)
4230
4231 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4230.212 kb on + strand at 4230.283 kb on + strand at 4230.283 kb on + strand at 4230.283 kb on + strand at 4230.284 kb on - strand at 4230.284 kb on - strand at 4230.284 kb on - strand at 4230.284 kb on - strand at 4230.416 kb on + strand, within Pf6N2E2_3632 at 4230.416 kb on + strand, within Pf6N2E2_3632 at 4230.416 kb on + strand, within Pf6N2E2_3632 at 4230.416 kb on + strand, within Pf6N2E2_3632 at 4230.416 kb on + strand, within Pf6N2E2_3632 at 4230.416 kb on + strand, within Pf6N2E2_3632 at 4230.417 kb on - strand, within Pf6N2E2_3632 at 4230.614 kb on + strand, within Pf6N2E2_3632 at 4230.615 kb on - strand, within Pf6N2E2_3632 at 4230.651 kb on + strand, within Pf6N2E2_3632 at 4230.651 kb on + strand, within Pf6N2E2_3632 at 4230.652 kb on - strand, within Pf6N2E2_3632 at 4230.652 kb on - strand, within Pf6N2E2_3632 at 4230.652 kb on - strand, within Pf6N2E2_3632 at 4230.652 kb on - strand, within Pf6N2E2_3632 at 4230.816 kb on + strand, within Pf6N2E2_3632 at 4230.816 kb on + strand, within Pf6N2E2_3632 at 4230.836 kb on - strand, within Pf6N2E2_3632 at 4230.864 kb on + strand, within Pf6N2E2_3632 at 4230.865 kb on - strand, within Pf6N2E2_3632 at 4230.919 kb on + strand at 4230.920 kb on - strand at 4230.920 kb on - strand at 4230.984 kb on - strand at 4230.984 kb on - strand at 4231.034 kb on + strand at 4231.034 kb on + strand at 4231.035 kb on - strand at 4231.035 kb on - strand at 4231.062 kb on - strand at 4231.100 kb on + strand at 4231.100 kb on + strand at 4231.100 kb on + strand at 4231.101 kb on - strand at 4231.157 kb on - strand at 4231.157 kb on - strand at 4231.177 kb on - strand at 4231.177 kb on - strand at 4231.177 kb on - strand at 4231.186 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,230,212 + -1.6 4,230,283 + +0.3 4,230,283 + -1.3 4,230,283 + -0.1 4,230,284 - -0.3 4,230,284 - -1.0 4,230,284 - -0.3 4,230,284 - -1.0 4,230,416 + Pf6N2E2_3632 0.18 -1.1 4,230,416 + Pf6N2E2_3632 0.18 +1.1 4,230,416 + Pf6N2E2_3632 0.18 +0.7 4,230,416 + Pf6N2E2_3632 0.18 -0.5 4,230,416 + Pf6N2E2_3632 0.18 -0.3 4,230,416 + Pf6N2E2_3632 0.18 -0.7 4,230,417 - Pf6N2E2_3632 0.18 -0.3 4,230,614 + Pf6N2E2_3632 0.49 -0.1 4,230,615 - Pf6N2E2_3632 0.49 -0.6 4,230,651 + Pf6N2E2_3632 0.55 -0.2 4,230,651 + Pf6N2E2_3632 0.55 -0.5 4,230,652 - Pf6N2E2_3632 0.55 +0.0 4,230,652 - Pf6N2E2_3632 0.55 -0.9 4,230,652 - Pf6N2E2_3632 0.55 -0.8 4,230,652 - Pf6N2E2_3632 0.55 -1.4 4,230,816 + Pf6N2E2_3632 0.80 -1.1 4,230,816 + Pf6N2E2_3632 0.80 +0.6 4,230,836 - Pf6N2E2_3632 0.83 -1.1 4,230,864 + Pf6N2E2_3632 0.88 -1.6 4,230,865 - Pf6N2E2_3632 0.88 -0.2 4,230,919 + -0.9 4,230,920 - +0.3 4,230,920 - -1.0 4,230,984 - -1.8 4,230,984 - -2.0 4,231,034 + +0.7 4,231,034 + +0.1 4,231,035 - -0.3 4,231,035 - -1.3 4,231,062 - +1.2 4,231,100 + -0.7 4,231,100 + +0.7 4,231,100 + -1.5 4,231,101 - +1.5 4,231,157 - +2.1 4,231,157 - +1.8 4,231,177 - +0.8 4,231,177 - +2.3 4,231,177 - +2.7 4,231,186 - +0.8
Or see this region's nucleotide sequence