Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3629 and Pf6N2E2_3630 are separated by 170 nucleotides Pf6N2E2_3630 and Pf6N2E2_3631 are separated by 133 nucleotides
Pf6N2E2_3629 - DnaK-related protein, at 4,225,114 to 4,226,874
_3629
Pf6N2E2_3630 - Phosphoserine phosphatase (EC 3.1.3.3), at 4,227,045 to 4,228,259
_3630
Pf6N2E2_3631 - HAMP domain protein, at 4,228,393 to 4,229,907
_3631
Position (kb) 4227
4228
4229 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4226.138 kb on - strand, within Pf6N2E2_3629 at 4226.138 kb on - strand, within Pf6N2E2_3629 at 4226.140 kb on + strand, within Pf6N2E2_3629 at 4226.140 kb on + strand, within Pf6N2E2_3629 at 4226.141 kb on - strand, within Pf6N2E2_3629 at 4226.141 kb on - strand, within Pf6N2E2_3629 at 4226.141 kb on - strand, within Pf6N2E2_3629 at 4226.141 kb on - strand, within Pf6N2E2_3629 at 4226.172 kb on - strand, within Pf6N2E2_3629 at 4226.178 kb on + strand, within Pf6N2E2_3629 at 4226.287 kb on + strand, within Pf6N2E2_3629 at 4226.288 kb on - strand, within Pf6N2E2_3629 at 4226.365 kb on + strand, within Pf6N2E2_3629 at 4226.365 kb on + strand, within Pf6N2E2_3629 at 4226.365 kb on + strand, within Pf6N2E2_3629 at 4226.365 kb on + strand, within Pf6N2E2_3629 at 4226.365 kb on + strand, within Pf6N2E2_3629 at 4226.365 kb on + strand at 4226.366 kb on - strand, within Pf6N2E2_3629 at 4226.618 kb on - strand, within Pf6N2E2_3629 at 4226.618 kb on - strand, within Pf6N2E2_3629 at 4226.621 kb on + strand, within Pf6N2E2_3629 at 4227.019 kb on + strand at 4227.020 kb on - strand at 4227.082 kb on + strand at 4227.082 kb on + strand at 4227.082 kb on + strand at 4227.082 kb on + strand at 4227.083 kb on - strand at 4227.083 kb on - strand at 4227.083 kb on - strand at 4227.083 kb on - strand at 4227.083 kb on - strand at 4227.083 kb on - strand at 4227.355 kb on + strand, within Pf6N2E2_3630 at 4227.356 kb on - strand, within Pf6N2E2_3630 at 4227.356 kb on - strand, within Pf6N2E2_3630 at 4227.356 kb on - strand, within Pf6N2E2_3630 at 4227.394 kb on + strand, within Pf6N2E2_3630 at 4227.427 kb on + strand, within Pf6N2E2_3630 at 4227.428 kb on - strand, within Pf6N2E2_3630 at 4227.428 kb on - strand, within Pf6N2E2_3630 at 4227.895 kb on + strand, within Pf6N2E2_3630 at 4227.895 kb on + strand, within Pf6N2E2_3630 at 4227.895 kb on + strand, within Pf6N2E2_3630 at 4227.896 kb on - strand, within Pf6N2E2_3630 at 4227.896 kb on - strand, within Pf6N2E2_3630 at 4228.240 kb on - strand at 4228.294 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,226,138 - Pf6N2E2_3629 0.58 +1.5 4,226,138 - Pf6N2E2_3629 0.58 -0.1 4,226,140 + Pf6N2E2_3629 0.58 +0.8 4,226,140 + Pf6N2E2_3629 0.58 -0.4 4,226,141 - Pf6N2E2_3629 0.58 -0.0 4,226,141 - Pf6N2E2_3629 0.58 +0.2 4,226,141 - Pf6N2E2_3629 0.58 +0.3 4,226,141 - Pf6N2E2_3629 0.58 +2.0 4,226,172 - Pf6N2E2_3629 0.60 -1.3 4,226,178 + Pf6N2E2_3629 0.60 +0.6 4,226,287 + Pf6N2E2_3629 0.67 +0.3 4,226,288 - Pf6N2E2_3629 0.67 +0.1 4,226,365 + Pf6N2E2_3629 0.71 +0.4 4,226,365 + Pf6N2E2_3629 0.71 -0.4 4,226,365 + Pf6N2E2_3629 0.71 -0.0 4,226,365 + Pf6N2E2_3629 0.71 +0.1 4,226,365 + Pf6N2E2_3629 0.71 +1.1 4,226,365 + +3.7 4,226,366 - Pf6N2E2_3629 0.71 +0.2 4,226,618 - Pf6N2E2_3629 0.85 +0.0 4,226,618 - Pf6N2E2_3629 0.85 +0.3 4,226,621 + Pf6N2E2_3629 0.86 +0.3 4,227,019 + -1.3 4,227,020 - +0.2 4,227,082 + -3.0 4,227,082 + -2.9 4,227,082 + -0.9 4,227,082 + -2.4 4,227,083 - -2.1 4,227,083 - -0.7 4,227,083 - -1.9 4,227,083 - -2.1 4,227,083 - -1.4 4,227,083 - -2.5 4,227,355 + Pf6N2E2_3630 0.26 -1.4 4,227,356 - Pf6N2E2_3630 0.26 -1.1 4,227,356 - Pf6N2E2_3630 0.26 -1.3 4,227,356 - Pf6N2E2_3630 0.26 +0.1 4,227,394 + Pf6N2E2_3630 0.29 -3.8 4,227,427 + Pf6N2E2_3630 0.31 -1.1 4,227,428 - Pf6N2E2_3630 0.32 -0.1 4,227,428 - Pf6N2E2_3630 0.32 -3.0 4,227,895 + Pf6N2E2_3630 0.70 -2.5 4,227,895 + Pf6N2E2_3630 0.70 -3.0 4,227,895 + Pf6N2E2_3630 0.70 -1.9 4,227,896 - Pf6N2E2_3630 0.70 -1.4 4,227,896 - Pf6N2E2_3630 0.70 -2.7 4,228,240 - -2.9 4,228,294 + +1.5
Or see this region's nucleotide sequence