Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3612 and Pf6N2E2_3613 are separated by 85 nucleotides Pf6N2E2_3613 and Pf6N2E2_3614 are separated by 12 nucleotides Pf6N2E2_3614 and Pf6N2E2_3615 are separated by 91 nucleotides
Pf6N2E2_3612 - HflK protein, at 4,206,586 to 4,207,758
_3612
Pf6N2E2_3613 - GTP-binding protein HflX, at 4,207,844 to 4,209,145
_3613
Pf6N2E2_3614 - RNA-binding protein Hfq, at 4,209,158 to 4,209,418
_3614
Pf6N2E2_3615 - tRNA dimethylallyltransferase (EC 2.5.1.75), at 4,209,510 to 4,210,481
_3615
Position (kb) 4207
4208
4209
4210 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 4206.981 kb on - strand, within Pf6N2E2_3612 at 4207.394 kb on + strand, within Pf6N2E2_3612 at 4207.394 kb on + strand, within Pf6N2E2_3612 at 4207.394 kb on + strand, within Pf6N2E2_3612 at 4207.395 kb on - strand, within Pf6N2E2_3612 at 4207.395 kb on - strand, within Pf6N2E2_3612 at 4207.449 kb on - strand, within Pf6N2E2_3612 at 4207.813 kb on - strand at 4207.813 kb on - strand at 4207.813 kb on - strand at 4207.813 kb on - strand at 4207.813 kb on - strand at 4207.846 kb on - strand at 4208.196 kb on + strand, within Pf6N2E2_3613 at 4208.197 kb on - strand, within Pf6N2E2_3613 at 4208.197 kb on - strand, within Pf6N2E2_3613 at 4208.197 kb on - strand, within Pf6N2E2_3613 at 4208.197 kb on - strand, within Pf6N2E2_3613 at 4208.197 kb on - strand, within Pf6N2E2_3613 at 4208.197 kb on - strand, within Pf6N2E2_3613 at 4208.197 kb on - strand, within Pf6N2E2_3613 at 4208.197 kb on - strand, within Pf6N2E2_3613 at 4208.197 kb on - strand, within Pf6N2E2_3613 at 4208.197 kb on - strand, within Pf6N2E2_3613 at 4208.197 kb on - strand, within Pf6N2E2_3613 at 4208.197 kb on - strand, within Pf6N2E2_3613 at 4208.199 kb on - strand, within Pf6N2E2_3613 at 4208.199 kb on - strand, within Pf6N2E2_3613 at 4208.336 kb on - strand, within Pf6N2E2_3613 at 4208.359 kb on + strand, within Pf6N2E2_3613 at 4208.475 kb on + strand, within Pf6N2E2_3613 at 4208.476 kb on - strand, within Pf6N2E2_3613 at 4208.476 kb on - strand, within Pf6N2E2_3613 at 4208.476 kb on - strand, within Pf6N2E2_3613 at 4208.476 kb on - strand, within Pf6N2E2_3613 at 4208.476 kb on - strand, within Pf6N2E2_3613 at 4208.476 kb on - strand, within Pf6N2E2_3613 at 4208.497 kb on + strand, within Pf6N2E2_3613 at 4208.816 kb on - strand, within Pf6N2E2_3613 at 4208.834 kb on - strand, within Pf6N2E2_3613 at 4209.157 kb on - strand at 4209.157 kb on - strand at 4209.434 kb on - strand at 4209.444 kb on - strand at 4209.491 kb on - strand at 4209.520 kb on - strand at 4209.539 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,206,981 - Pf6N2E2_3612 0.34 +0.3 4,207,394 + Pf6N2E2_3612 0.69 +1.9 4,207,394 + Pf6N2E2_3612 0.69 +2.3 4,207,394 + Pf6N2E2_3612 0.69 +1.9 4,207,395 - Pf6N2E2_3612 0.69 +0.3 4,207,395 - Pf6N2E2_3612 0.69 +0.7 4,207,449 - Pf6N2E2_3612 0.74 -0.1 4,207,813 - -0.9 4,207,813 - -1.5 4,207,813 - -1.2 4,207,813 - -0.7 4,207,813 - -1.4 4,207,846 - -1.7 4,208,196 + Pf6N2E2_3613 0.27 +1.9 4,208,197 - Pf6N2E2_3613 0.27 +1.1 4,208,197 - Pf6N2E2_3613 0.27 -1.5 4,208,197 - Pf6N2E2_3613 0.27 -1.4 4,208,197 - Pf6N2E2_3613 0.27 -1.6 4,208,197 - Pf6N2E2_3613 0.27 -0.4 4,208,197 - Pf6N2E2_3613 0.27 -0.8 4,208,197 - Pf6N2E2_3613 0.27 -1.2 4,208,197 - Pf6N2E2_3613 0.27 -2.1 4,208,197 - Pf6N2E2_3613 0.27 -2.9 4,208,197 - Pf6N2E2_3613 0.27 -1.3 4,208,197 - Pf6N2E2_3613 0.27 -0.1 4,208,197 - Pf6N2E2_3613 0.27 -1.1 4,208,199 - Pf6N2E2_3613 0.27 -1.2 4,208,199 - Pf6N2E2_3613 0.27 +0.8 4,208,336 - Pf6N2E2_3613 0.38 -2.2 4,208,359 + Pf6N2E2_3613 0.40 -0.3 4,208,475 + Pf6N2E2_3613 0.48 -0.5 4,208,476 - Pf6N2E2_3613 0.49 -2.1 4,208,476 - Pf6N2E2_3613 0.49 -2.7 4,208,476 - Pf6N2E2_3613 0.49 +0.1 4,208,476 - Pf6N2E2_3613 0.49 +0.3 4,208,476 - Pf6N2E2_3613 0.49 -1.2 4,208,476 - Pf6N2E2_3613 0.49 -1.9 4,208,497 + Pf6N2E2_3613 0.50 +0.3 4,208,816 - Pf6N2E2_3613 0.75 +0.8 4,208,834 - Pf6N2E2_3613 0.76 -1.8 4,209,157 - -0.9 4,209,157 - -0.3 4,209,434 - -0.2 4,209,444 - +2.3 4,209,491 - +7.9 4,209,520 - +9.6 4,209,539 - +4.9
Or see this region's nucleotide sequence