Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3610

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3609 and Pf6N2E2_3610 are separated by 54 nucleotidesPf6N2E2_3610 and Pf6N2E2_3611 are separated by 474 nucleotides Pf6N2E2_3609 - Adenylosuccinate synthetase (EC 6.3.4.4), at 4,202,708 to 4,204,000 _3609 Pf6N2E2_3610 - ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17), at 4,204,055 to 4,205,242 _3610 Pf6N2E2_3611 - HflC protein, at 4,205,717 to 4,206,586 _3611 Position (kb) 4204 4205 4206Strain fitness (log2 ratio) -3 -2 -1 0 1at 4204.074 kb on - strandat 4204.074 kb on - strandat 4204.220 kb on - strand, within Pf6N2E2_3610at 4204.251 kb on - strand, within Pf6N2E2_3610at 4204.453 kb on - strand, within Pf6N2E2_3610at 4204.738 kb on - strand, within Pf6N2E2_3610at 4204.738 kb on - strand, within Pf6N2E2_3610at 4204.738 kb on - strand, within Pf6N2E2_3610at 4204.738 kb on - strand, within Pf6N2E2_3610at 4204.738 kb on - strand, within Pf6N2E2_3610at 4204.849 kb on - strand, within Pf6N2E2_3610at 4204.849 kb on - strand, within Pf6N2E2_3610at 4205.125 kb on - strandat 4205.196 kb on - strandat 4205.232 kb on - strandat 4205.232 kb on - strandat 4205.232 kb on - strandat 4205.232 kb on - strandat 4205.232 kb on - strandat 4205.244 kb on - strandat 4205.244 kb on - strandat 4205.380 kb on - strandat 4205.506 kb on - strandat 4205.506 kb on - strandat 4205.506 kb on - strandat 4205.506 kb on - strandat 4205.506 kb on - strandat 4205.643 kb on - strandat 4205.643 kb on - strandat 4205.643 kb on - strandat 4205.643 kb on - strandat 4205.643 kb on - strandat 4205.643 kb on - strandat 4205.643 kb on - strandat 4205.643 kb on - strandat 4205.643 kb on - strandat 4205.643 kb on - strandat 4205.643 kb on - strandat 4205.682 kb on - strandat 4205.866 kb on - strand, within Pf6N2E2_3611

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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4,204,074 - +0.1
4,204,074 - -0.2
4,204,220 - Pf6N2E2_3610 0.14 -1.7
4,204,251 - Pf6N2E2_3610 0.16 -1.8
4,204,453 - Pf6N2E2_3610 0.34 +0.3
4,204,738 - Pf6N2E2_3610 0.57 -2.9
4,204,738 - Pf6N2E2_3610 0.57 -2.6
4,204,738 - Pf6N2E2_3610 0.57 -1.8
4,204,738 - Pf6N2E2_3610 0.57 -1.7
4,204,738 - Pf6N2E2_3610 0.57 -2.6
4,204,849 - Pf6N2E2_3610 0.67 -3.2
4,204,849 - Pf6N2E2_3610 0.67 -3.7
4,205,125 - -1.2
4,205,196 - -3.5
4,205,232 - +1.7
4,205,232 - -2.5
4,205,232 - -1.8
4,205,232 - -2.7
4,205,232 - -2.6
4,205,244 - -3.4
4,205,244 - -1.8
4,205,380 - -0.8
4,205,506 - +0.3
4,205,506 - -0.7
4,205,506 - +0.5
4,205,506 - -1.7
4,205,506 - -1.4
4,205,643 - -0.8
4,205,643 - -1.2
4,205,643 - +0.2
4,205,643 - +0.5
4,205,643 - -2.3
4,205,643 - -1.1
4,205,643 - -1.9
4,205,643 - -2.0
4,205,643 - -3.2
4,205,643 - -0.3
4,205,643 - -0.3
4,205,682 - +0.4
4,205,866 - Pf6N2E2_3611 0.17 +0.9

Or see this region's nucleotide sequence