Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3339

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3337 and Pf6N2E2_3338 are separated by 28 nucleotidesPf6N2E2_3338 and Pf6N2E2_3339 overlap by 1 nucleotidesPf6N2E2_3339 and Pf6N2E2_3340 are separated by 288 nucleotides Pf6N2E2_3337 - PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69), at 3,860,717 to 3,862,444 _3337 Pf6N2E2_3338 - 1-phosphofructokinase (EC 2.7.1.56), at 3,862,473 to 3,863,414 _3338 Pf6N2E2_3339 - Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9), at 3,863,414 to 3,866,278 _3339 Pf6N2E2_3340 - Fructose repressor FruR, LacI family, at 3,866,567 to 3,867,562 _3340 Position (kb) 3863 3864 3865 3866 3867Strain fitness (log2 ratio) -2 -1 0 1 2at 3862.451 kb on + strandat 3862.452 kb on - strandat 3862.474 kb on + strandat 3862.474 kb on + strandat 3862.474 kb on + strandat 3862.474 kb on + strandat 3862.474 kb on + strandat 3862.474 kb on + strandat 3862.474 kb on + strandat 3862.474 kb on + strandat 3862.475 kb on - strandat 3862.475 kb on - strandat 3862.475 kb on - strandat 3862.475 kb on - strandat 3862.475 kb on - strandat 3862.475 kb on - strandat 3862.475 kb on - strandat 3862.475 kb on - strandat 3862.475 kb on - strandat 3863.168 kb on + strand, within Pf6N2E2_3338at 3863.168 kb on + strand, within Pf6N2E2_3338at 3863.168 kb on + strand, within Pf6N2E2_3338at 3863.415 kb on + strandat 3863.429 kb on + strandat 3863.430 kb on - strandat 3863.486 kb on + strandat 3863.486 kb on + strandat 3863.487 kb on - strandat 3863.745 kb on + strand, within Pf6N2E2_3339at 3863.746 kb on - strand, within Pf6N2E2_3339at 3863.811 kb on - strand, within Pf6N2E2_3339at 3863.811 kb on - strand, within Pf6N2E2_3339at 3864.072 kb on + strand, within Pf6N2E2_3339at 3864.545 kb on - strand, within Pf6N2E2_3339at 3864.636 kb on + strand, within Pf6N2E2_3339at 3864.636 kb on + strand, within Pf6N2E2_3339at 3864.636 kb on + strand, within Pf6N2E2_3339at 3864.636 kb on + strand, within Pf6N2E2_3339at 3864.636 kb on + strand, within Pf6N2E2_3339at 3864.636 kb on + strand, within Pf6N2E2_3339at 3864.636 kb on + strand, within Pf6N2E2_3339at 3864.636 kb on + strand, within Pf6N2E2_3339at 3864.636 kb on + strand, within Pf6N2E2_3339at 3864.636 kb on + strand, within Pf6N2E2_3339at 3864.636 kb on + strand, within Pf6N2E2_3339at 3864.636 kb on + strand, within Pf6N2E2_3339at 3864.636 kb on + strand, within Pf6N2E2_3339at 3864.637 kb on - strand, within Pf6N2E2_3339at 3864.637 kb on - strand, within Pf6N2E2_3339at 3864.637 kb on - strand, within Pf6N2E2_3339at 3864.637 kb on - strand, within Pf6N2E2_3339at 3864.637 kb on - strand, within Pf6N2E2_3339at 3864.637 kb on - strand, within Pf6N2E2_3339at 3864.637 kb on - strand, within Pf6N2E2_3339at 3865.017 kb on - strand, within Pf6N2E2_3339at 3865.017 kb on - strand, within Pf6N2E2_3339at 3865.782 kb on - strand, within Pf6N2E2_3339at 3865.998 kb on + strandat 3865.998 kb on + strandat 3866.107 kb on + strandat 3866.107 kb on + strandat 3866.107 kb on + strandat 3866.107 kb on + strandat 3866.108 kb on - strandat 3866.108 kb on - strandat 3866.108 kb on - strandat 3866.163 kb on + strandat 3866.164 kb on - strandat 3866.164 kb on - strandat 3866.253 kb on - strandat 3866.253 kb on - strandat 3866.261 kb on + strandat 3866.262 kb on - strandat 3866.262 kb on - strandat 3866.313 kb on + strandat 3866.313 kb on + strandat 3866.314 kb on - strandat 3866.403 kb on - strandat 3866.442 kb on + strandat 3866.480 kb on + strandat 3866.582 kb on - strandat 3866.621 kb on + strandat 3866.621 kb on + strandat 3866.621 kb on + strandat 3866.621 kb on + strandat 3866.621 kb on + strandat 3866.621 kb on + strandat 3866.621 kb on + strandat 3866.621 kb on + strandat 3866.621 kb on + strandat 3866.621 kb on + strandat 3866.622 kb on - strandat 3866.622 kb on - strandat 3866.622 kb on - strandat 3866.622 kb on - strandat 3866.622 kb on - strandat 3866.622 kb on - strandat 3866.622 kb on - strandat 3866.622 kb on - strandat 3866.622 kb on - strandat 3866.622 kb on - strandat 3866.622 kb on - strandat 3866.653 kb on + strandat 3866.653 kb on + strandat 3866.653 kb on + strandat 3866.653 kb on + strandat 3866.654 kb on - strandat 3866.654 kb on - strandat 3866.654 kb on - strandat 3866.792 kb on + strand, within Pf6N2E2_3340at 3866.792 kb on + strand, within Pf6N2E2_3340at 3866.793 kb on - strand, within Pf6N2E2_3340at 3866.841 kb on - strand, within Pf6N2E2_3340at 3866.967 kb on - strand, within Pf6N2E2_3340at 3866.967 kb on - strand, within Pf6N2E2_3340at 3866.967 kb on - strand, within Pf6N2E2_3340

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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3,862,451 + +0.2
3,862,452 - -1.2
3,862,474 + +0.6
3,862,474 + +0.9
3,862,474 + -1.5
3,862,474 + -1.3
3,862,474 + +0.1
3,862,474 + -0.8
3,862,474 + -1.4
3,862,474 + +2.0
3,862,475 - -0.2
3,862,475 - -1.4
3,862,475 - -0.5
3,862,475 - -0.2
3,862,475 - +0.1
3,862,475 - -0.4
3,862,475 - -2.4
3,862,475 - -0.2
3,862,475 - -0.1
3,863,168 + Pf6N2E2_3338 0.74 -1.5
3,863,168 + Pf6N2E2_3338 0.74 +0.9
3,863,168 + Pf6N2E2_3338 0.74 -1.6
3,863,415 + +1.5
3,863,429 + -1.1
3,863,430 - +1.5
3,863,486 + -1.2
3,863,486 + -1.6
3,863,487 - +0.4
3,863,745 + Pf6N2E2_3339 0.12 -0.5
3,863,746 - Pf6N2E2_3339 0.12 +0.5
3,863,811 - Pf6N2E2_3339 0.14 -1.5
3,863,811 - Pf6N2E2_3339 0.14 +0.4
3,864,072 + Pf6N2E2_3339 0.23 +1.1
3,864,545 - Pf6N2E2_3339 0.39 +0.2
3,864,636 + Pf6N2E2_3339 0.43 -0.3
3,864,636 + Pf6N2E2_3339 0.43 -0.3
3,864,636 + Pf6N2E2_3339 0.43 -1.4
3,864,636 + Pf6N2E2_3339 0.43 +0.7
3,864,636 + Pf6N2E2_3339 0.43 -0.4
3,864,636 + Pf6N2E2_3339 0.43 -0.5
3,864,636 + Pf6N2E2_3339 0.43 -1.5
3,864,636 + Pf6N2E2_3339 0.43 -0.7
3,864,636 + Pf6N2E2_3339 0.43 -2.0
3,864,636 + Pf6N2E2_3339 0.43 +0.2
3,864,636 + Pf6N2E2_3339 0.43 -0.3
3,864,636 + Pf6N2E2_3339 0.43 -0.5
3,864,636 + Pf6N2E2_3339 0.43 -1.4
3,864,637 - Pf6N2E2_3339 0.43 +0.2
3,864,637 - Pf6N2E2_3339 0.43 -0.3
3,864,637 - Pf6N2E2_3339 0.43 +0.9
3,864,637 - Pf6N2E2_3339 0.43 -0.4
3,864,637 - Pf6N2E2_3339 0.43 -0.7
3,864,637 - Pf6N2E2_3339 0.43 +0.5
3,864,637 - Pf6N2E2_3339 0.43 +1.3
3,865,017 - Pf6N2E2_3339 0.56 -0.9
3,865,017 - Pf6N2E2_3339 0.56 -2.4
3,865,782 - Pf6N2E2_3339 0.83 -0.4
3,865,998 + -1.4
3,865,998 + -1.7
3,866,107 + -0.2
3,866,107 + -1.9
3,866,107 + -0.2
3,866,107 + +0.1
3,866,108 - +2.1
3,866,108 - +0.6
3,866,108 - -0.2
3,866,163 + -0.1
3,866,164 - -0.3
3,866,164 - -0.6
3,866,253 - -1.1
3,866,253 - -1.5
3,866,261 + -1.5
3,866,262 - -2.3
3,866,262 - -1.7
3,866,313 + +1.0
3,866,313 + -0.3
3,866,314 - -0.5
3,866,403 - -0.7
3,866,442 + -1.0
3,866,480 + -0.5
3,866,582 - -2.1
3,866,621 + -1.0
3,866,621 + +0.5
3,866,621 + -2.1
3,866,621 + -0.3
3,866,621 + -0.5
3,866,621 + +0.9
3,866,621 + -1.3
3,866,621 + -1.6
3,866,621 + -1.0
3,866,621 + -0.0
3,866,622 - +0.9
3,866,622 - +0.6
3,866,622 - -0.1
3,866,622 - +1.6
3,866,622 - +0.7
3,866,622 - -0.5
3,866,622 - +0.5
3,866,622 - -1.6
3,866,622 - -1.0
3,866,622 - -0.1
3,866,622 - -1.9
3,866,653 + +0.2
3,866,653 + -0.2
3,866,653 + -0.4
3,866,653 + -0.4
3,866,654 - -1.2
3,866,654 - -1.2
3,866,654 - -1.8
3,866,792 + Pf6N2E2_3340 0.23 -0.9
3,866,792 + Pf6N2E2_3340 0.23 +0.1
3,866,793 - Pf6N2E2_3340 0.23 -2.6
3,866,841 - Pf6N2E2_3340 0.28 +1.1
3,866,967 - Pf6N2E2_3340 0.40 -0.7
3,866,967 - Pf6N2E2_3340 0.40 -0.2
3,866,967 - Pf6N2E2_3340 0.40 -0.2

Or see this region's nucleotide sequence