Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3337

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3336 and Pf6N2E2_3337 are separated by 314 nucleotidesPf6N2E2_3337 and Pf6N2E2_3338 are separated by 28 nucleotidesPf6N2E2_3338 and Pf6N2E2_3339 overlap by 1 nucleotides Pf6N2E2_3336 - Phosphodiesterase/alkaline phosphatase D, at 3,858,861 to 3,860,402 _3336 Pf6N2E2_3337 - PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69), at 3,860,717 to 3,862,444 _3337 Pf6N2E2_3338 - 1-phosphofructokinase (EC 2.7.1.56), at 3,862,473 to 3,863,414 _3338 Pf6N2E2_3339 - Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9), at 3,863,414 to 3,866,278 _3339 Position (kb) 3860 3861 3862 3863Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3859.735 kb on + strand, within Pf6N2E2_3336at 3859.736 kb on - strand, within Pf6N2E2_3336at 3859.742 kb on - strand, within Pf6N2E2_3336at 3859.858 kb on + strand, within Pf6N2E2_3336at 3859.858 kb on + strand, within Pf6N2E2_3336at 3859.858 kb on + strand, within Pf6N2E2_3336at 3859.859 kb on - strand, within Pf6N2E2_3336at 3859.859 kb on - strand, within Pf6N2E2_3336at 3859.859 kb on - strand, within Pf6N2E2_3336at 3859.915 kb on + strand, within Pf6N2E2_3336at 3859.915 kb on + strand, within Pf6N2E2_3336at 3859.916 kb on - strand, within Pf6N2E2_3336at 3859.916 kb on - strand, within Pf6N2E2_3336at 3859.916 kb on - strand, within Pf6N2E2_3336at 3859.916 kb on - strand, within Pf6N2E2_3336at 3860.246 kb on + strand, within Pf6N2E2_3336at 3860.246 kb on + strand, within Pf6N2E2_3336at 3860.246 kb on + strand, within Pf6N2E2_3336at 3860.246 kb on + strand, within Pf6N2E2_3336at 3860.430 kb on + strandat 3860.430 kb on + strandat 3860.431 kb on - strandat 3860.431 kb on - strandat 3860.431 kb on - strandat 3860.489 kb on + strandat 3860.490 kb on - strandat 3860.490 kb on - strandat 3860.490 kb on - strandat 3860.490 kb on - strandat 3860.610 kb on + strandat 3860.683 kb on + strandat 3860.683 kb on + strandat 3860.684 kb on - strandat 3860.684 kb on - strandat 3860.747 kb on + strandat 3860.820 kb on + strandat 3860.820 kb on + strandat 3860.821 kb on - strandat 3860.821 kb on - strandat 3860.821 kb on - strandat 3860.821 kb on - strandat 3860.821 kb on - strandat 3860.901 kb on + strand, within Pf6N2E2_3337at 3861.321 kb on + strand, within Pf6N2E2_3337at 3861.321 kb on + strand, within Pf6N2E2_3337at 3861.321 kb on + strand, within Pf6N2E2_3337at 3861.321 kb on + strand, within Pf6N2E2_3337at 3861.321 kb on + strand, within Pf6N2E2_3337at 3861.322 kb on - strand, within Pf6N2E2_3337at 3861.322 kb on - strand, within Pf6N2E2_3337at 3861.322 kb on - strand, within Pf6N2E2_3337at 3861.322 kb on - strand, within Pf6N2E2_3337at 3861.322 kb on - strand, within Pf6N2E2_3337at 3861.546 kb on + strand, within Pf6N2E2_3337at 3861.546 kb on + strand, within Pf6N2E2_3337at 3861.555 kb on + strand, within Pf6N2E2_3337at 3861.555 kb on + strand, within Pf6N2E2_3337at 3861.556 kb on - strand, within Pf6N2E2_3337at 3861.738 kb on + strand, within Pf6N2E2_3337at 3861.738 kb on + strand, within Pf6N2E2_3337at 3861.739 kb on - strand, within Pf6N2E2_3337at 3861.868 kb on - strand, within Pf6N2E2_3337at 3862.451 kb on + strandat 3862.452 kb on - strandat 3862.474 kb on + strandat 3862.474 kb on + strandat 3862.474 kb on + strandat 3862.474 kb on + strandat 3862.474 kb on + strandat 3862.474 kb on + strandat 3862.474 kb on + strandat 3862.474 kb on + strandat 3862.475 kb on - strandat 3862.475 kb on - strandat 3862.475 kb on - strandat 3862.475 kb on - strandat 3862.475 kb on - strandat 3862.475 kb on - strandat 3862.475 kb on - strandat 3862.475 kb on - strandat 3862.475 kb on - strandat 3863.168 kb on + strand, within Pf6N2E2_3338at 3863.168 kb on + strand, within Pf6N2E2_3338at 3863.168 kb on + strand, within Pf6N2E2_3338at 3863.415 kb on + strandat 3863.429 kb on + strandat 3863.430 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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3,859,735 + Pf6N2E2_3336 0.57 +2.1
3,859,736 - Pf6N2E2_3336 0.57 +0.5
3,859,742 - Pf6N2E2_3336 0.57 +1.3
3,859,858 + Pf6N2E2_3336 0.65 +0.3
3,859,858 + Pf6N2E2_3336 0.65 -1.0
3,859,858 + Pf6N2E2_3336 0.65 -0.1
3,859,859 - Pf6N2E2_3336 0.65 +0.2
3,859,859 - Pf6N2E2_3336 0.65 -0.2
3,859,859 - Pf6N2E2_3336 0.65 -0.6
3,859,915 + Pf6N2E2_3336 0.68 +0.4
3,859,915 + Pf6N2E2_3336 0.68 +0.1
3,859,916 - Pf6N2E2_3336 0.68 +0.7
3,859,916 - Pf6N2E2_3336 0.68 +0.3
3,859,916 - Pf6N2E2_3336 0.68 -1.1
3,859,916 - Pf6N2E2_3336 0.68 +1.1
3,860,246 + Pf6N2E2_3336 0.90 +0.5
3,860,246 + Pf6N2E2_3336 0.90 -0.3
3,860,246 + Pf6N2E2_3336 0.90 +0.3
3,860,246 + Pf6N2E2_3336 0.90 -0.1
3,860,430 + -0.3
3,860,430 + +0.2
3,860,431 - +0.4
3,860,431 - -0.4
3,860,431 - -0.2
3,860,489 + -1.1
3,860,490 - +0.5
3,860,490 - -0.1
3,860,490 - -0.1
3,860,490 - -0.5
3,860,610 + +0.4
3,860,683 + +1.1
3,860,683 + -1.0
3,860,684 - -0.2
3,860,684 - +0.2
3,860,747 + -0.4
3,860,820 + -1.5
3,860,820 + -2.7
3,860,821 - +1.5
3,860,821 - -1.7
3,860,821 - -0.0
3,860,821 - -1.2
3,860,821 - +0.1
3,860,901 + Pf6N2E2_3337 0.11 -0.4
3,861,321 + Pf6N2E2_3337 0.35 -1.6
3,861,321 + Pf6N2E2_3337 0.35 -1.1
3,861,321 + Pf6N2E2_3337 0.35 +0.1
3,861,321 + Pf6N2E2_3337 0.35 -1.9
3,861,321 + Pf6N2E2_3337 0.35 -0.3
3,861,322 - Pf6N2E2_3337 0.35 -2.3
3,861,322 - Pf6N2E2_3337 0.35 -2.1
3,861,322 - Pf6N2E2_3337 0.35 -0.9
3,861,322 - Pf6N2E2_3337 0.35 -2.1
3,861,322 - Pf6N2E2_3337 0.35 -0.7
3,861,546 + Pf6N2E2_3337 0.48 -1.1
3,861,546 + Pf6N2E2_3337 0.48 -1.3
3,861,555 + Pf6N2E2_3337 0.48 -0.1
3,861,555 + Pf6N2E2_3337 0.48 -1.6
3,861,556 - Pf6N2E2_3337 0.49 -1.7
3,861,738 + Pf6N2E2_3337 0.59 -3.0
3,861,738 + Pf6N2E2_3337 0.59 -1.5
3,861,739 - Pf6N2E2_3337 0.59 -0.1
3,861,868 - Pf6N2E2_3337 0.67 -0.4
3,862,451 + +0.2
3,862,452 - -1.2
3,862,474 + +0.6
3,862,474 + +0.9
3,862,474 + -1.5
3,862,474 + -1.3
3,862,474 + +0.1
3,862,474 + -0.8
3,862,474 + -1.4
3,862,474 + +2.0
3,862,475 - -0.2
3,862,475 - -1.4
3,862,475 - -0.5
3,862,475 - -0.2
3,862,475 - +0.1
3,862,475 - -0.4
3,862,475 - -2.4
3,862,475 - -0.2
3,862,475 - -0.1
3,863,168 + Pf6N2E2_3338 0.74 -1.5
3,863,168 + Pf6N2E2_3338 0.74 +0.9
3,863,168 + Pf6N2E2_3338 0.74 -1.6
3,863,415 + +1.5
3,863,429 + -1.1
3,863,430 - +1.5

Or see this region's nucleotide sequence