Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3282

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3281 and Pf6N2E2_3282 are separated by 137 nucleotidesPf6N2E2_3282 and Pf6N2E2_3283 are separated by 60 nucleotides Pf6N2E2_3281 - FIG003879: Predicted amidohydrolase / Omega amidase (Nit2 homolog), at 3,784,681 to 3,785,544 _3281 Pf6N2E2_3282 - FIG005080: Possible exported protein, at 3,785,682 to 3,789,485 _3282 Pf6N2E2_3283 - Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-), at 3,789,546 to 3,791,003 _3283 Position (kb) 3785 3786 3787 3788 3789 3790Strain fitness (log2 ratio) -1 0 1 2 3at 3784.682 kb on + strandat 3784.928 kb on + strand, within Pf6N2E2_3281at 3784.928 kb on + strand, within Pf6N2E2_3281at 3784.928 kb on + strand, within Pf6N2E2_3281at 3784.928 kb on + strand, within Pf6N2E2_3281at 3784.928 kb on + strand, within Pf6N2E2_3281at 3784.928 kb on + strand, within Pf6N2E2_3281at 3784.928 kb on + strand, within Pf6N2E2_3281at 3784.928 kb on + strand, within Pf6N2E2_3281at 3784.929 kb on - strand, within Pf6N2E2_3281at 3784.929 kb on - strand, within Pf6N2E2_3281at 3784.929 kb on - strand, within Pf6N2E2_3281at 3784.963 kb on + strand, within Pf6N2E2_3281at 3784.963 kb on + strand, within Pf6N2E2_3281at 3785.049 kb on - strand, within Pf6N2E2_3281at 3785.049 kb on - strand, within Pf6N2E2_3281at 3785.133 kb on - strand, within Pf6N2E2_3281at 3785.133 kb on - strand, within Pf6N2E2_3281at 3785.133 kb on - strand, within Pf6N2E2_3281at 3785.138 kb on + strand, within Pf6N2E2_3281at 3785.138 kb on + strand, within Pf6N2E2_3281at 3785.138 kb on + strand, within Pf6N2E2_3281at 3785.138 kb on + strand, within Pf6N2E2_3281at 3785.138 kb on + strand, within Pf6N2E2_3281at 3785.139 kb on - strand, within Pf6N2E2_3281at 3785.139 kb on - strand, within Pf6N2E2_3281at 3785.565 kb on + strandat 3785.631 kb on - strandat 3785.631 kb on - strandat 3785.631 kb on - strandat 3785.631 kb on - strandat 3785.702 kb on + strandat 3785.969 kb on - strandat 3786.011 kb on - strandat 3786.014 kb on + strandat 3786.014 kb on + strandat 3786.015 kb on - strandat 3786.091 kb on - strand, within Pf6N2E2_3282at 3786.577 kb on + strand, within Pf6N2E2_3282at 3786.577 kb on + strand, within Pf6N2E2_3282at 3786.577 kb on + strand, within Pf6N2E2_3282at 3786.578 kb on - strand, within Pf6N2E2_3282at 3788.223 kb on + strand, within Pf6N2E2_3282at 3788.590 kb on + strand, within Pf6N2E2_3282at 3789.566 kb on - strandat 3789.566 kb on - strandat 3789.566 kb on - strandat 3789.566 kb on - strandat 3789.581 kb on - strandat 3789.696 kb on - strand, within Pf6N2E2_3283at 3789.696 kb on - strand, within Pf6N2E2_3283at 3789.696 kb on - strand, within Pf6N2E2_3283at 3789.696 kb on - strand, within Pf6N2E2_3283at 3789.696 kb on - strand, within Pf6N2E2_3283at 3789.696 kb on - strand, within Pf6N2E2_3283at 3789.698 kb on - strand, within Pf6N2E2_3283at 3789.698 kb on - strand, within Pf6N2E2_3283at 3789.698 kb on - strand, within Pf6N2E2_3283at 3789.698 kb on - strand, within Pf6N2E2_3283at 3790.238 kb on - strand, within Pf6N2E2_3283at 3790.388 kb on - strand, within Pf6N2E2_3283

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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3,784,682 + +0.6
3,784,928 + Pf6N2E2_3281 0.29 -0.1
3,784,928 + Pf6N2E2_3281 0.29 +0.0
3,784,928 + Pf6N2E2_3281 0.29 +0.2
3,784,928 + Pf6N2E2_3281 0.29 -0.3
3,784,928 + Pf6N2E2_3281 0.29 -1.2
3,784,928 + Pf6N2E2_3281 0.29 +0.3
3,784,928 + Pf6N2E2_3281 0.29 -0.0
3,784,928 + Pf6N2E2_3281 0.29 +0.5
3,784,929 - Pf6N2E2_3281 0.29 -0.8
3,784,929 - Pf6N2E2_3281 0.29 -0.2
3,784,929 - Pf6N2E2_3281 0.29 -0.2
3,784,963 + Pf6N2E2_3281 0.33 -0.8
3,784,963 + Pf6N2E2_3281 0.33 -0.4
3,785,049 - Pf6N2E2_3281 0.43 -0.0
3,785,049 - Pf6N2E2_3281 0.43 +1.1
3,785,133 - Pf6N2E2_3281 0.52 +1.4
3,785,133 - Pf6N2E2_3281 0.52 +1.1
3,785,133 - Pf6N2E2_3281 0.52 +0.3
3,785,138 + Pf6N2E2_3281 0.53 -0.8
3,785,138 + Pf6N2E2_3281 0.53 -0.5
3,785,138 + Pf6N2E2_3281 0.53 +1.3
3,785,138 + Pf6N2E2_3281 0.53 -0.3
3,785,138 + Pf6N2E2_3281 0.53 +0.4
3,785,139 - Pf6N2E2_3281 0.53 +1.9
3,785,139 - Pf6N2E2_3281 0.53 +0.7
3,785,565 + +0.8
3,785,631 - +0.7
3,785,631 - +0.5
3,785,631 - +1.1
3,785,631 - +0.1
3,785,702 + +0.6
3,785,969 - -0.4
3,786,011 - +1.7
3,786,014 + -0.2
3,786,014 + +1.8
3,786,015 - +0.1
3,786,091 - Pf6N2E2_3282 0.11 -1.3
3,786,577 + Pf6N2E2_3282 0.24 -0.4
3,786,577 + Pf6N2E2_3282 0.24 -1.2
3,786,577 + Pf6N2E2_3282 0.24 -0.8
3,786,578 - Pf6N2E2_3282 0.24 -1.3
3,788,223 + Pf6N2E2_3282 0.67 +0.4
3,788,590 + Pf6N2E2_3282 0.76 +0.4
3,789,566 - +2.1
3,789,566 - +2.1
3,789,566 - +3.4
3,789,566 - +2.9
3,789,581 - +3.1
3,789,696 - Pf6N2E2_3283 0.10 +2.8
3,789,696 - Pf6N2E2_3283 0.10 +1.9
3,789,696 - Pf6N2E2_3283 0.10 +3.6
3,789,696 - Pf6N2E2_3283 0.10 +1.8
3,789,696 - Pf6N2E2_3283 0.10 +3.0
3,789,696 - Pf6N2E2_3283 0.10 +2.4
3,789,698 - Pf6N2E2_3283 0.10 +1.8
3,789,698 - Pf6N2E2_3283 0.10 +2.1
3,789,698 - Pf6N2E2_3283 0.10 +2.8
3,789,698 - Pf6N2E2_3283 0.10 +1.7
3,790,238 - Pf6N2E2_3283 0.47 +2.9
3,790,388 - Pf6N2E2_3283 0.58 +3.4

Or see this region's nucleotide sequence