Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3281 and Pf6N2E2_3282 are separated by 137 nucleotides Pf6N2E2_3282 and Pf6N2E2_3283 are separated by 60 nucleotides
Pf6N2E2_3281 - FIG003879: Predicted amidohydrolase / Omega amidase (Nit2 homolog), at 3,784,681 to 3,785,544
_3281
Pf6N2E2_3282 - FIG005080: Possible exported protein, at 3,785,682 to 3,789,485
_3282
Pf6N2E2_3283 - Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-), at 3,789,546 to 3,791,003
_3283
Position (kb)
3785
3786
3787
3788
3789
3790 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3784.682 kb on + strand at 3784.928 kb on + strand, within Pf6N2E2_3281 at 3784.928 kb on + strand, within Pf6N2E2_3281 at 3784.928 kb on + strand, within Pf6N2E2_3281 at 3784.928 kb on + strand, within Pf6N2E2_3281 at 3784.928 kb on + strand, within Pf6N2E2_3281 at 3784.928 kb on + strand, within Pf6N2E2_3281 at 3784.928 kb on + strand, within Pf6N2E2_3281 at 3784.928 kb on + strand, within Pf6N2E2_3281 at 3784.929 kb on - strand, within Pf6N2E2_3281 at 3784.929 kb on - strand, within Pf6N2E2_3281 at 3784.929 kb on - strand, within Pf6N2E2_3281 at 3784.963 kb on + strand, within Pf6N2E2_3281 at 3784.963 kb on + strand, within Pf6N2E2_3281 at 3785.049 kb on - strand, within Pf6N2E2_3281 at 3785.049 kb on - strand, within Pf6N2E2_3281 at 3785.133 kb on - strand, within Pf6N2E2_3281 at 3785.133 kb on - strand, within Pf6N2E2_3281 at 3785.133 kb on - strand, within Pf6N2E2_3281 at 3785.138 kb on + strand, within Pf6N2E2_3281 at 3785.138 kb on + strand, within Pf6N2E2_3281 at 3785.138 kb on + strand, within Pf6N2E2_3281 at 3785.138 kb on + strand, within Pf6N2E2_3281 at 3785.138 kb on + strand, within Pf6N2E2_3281 at 3785.139 kb on - strand, within Pf6N2E2_3281 at 3785.139 kb on - strand, within Pf6N2E2_3281 at 3785.565 kb on + strand at 3785.631 kb on - strand at 3785.631 kb on - strand at 3785.631 kb on - strand at 3785.631 kb on - strand at 3785.702 kb on + strand at 3785.969 kb on - strand at 3786.011 kb on - strand at 3786.014 kb on + strand at 3786.014 kb on + strand at 3786.015 kb on - strand at 3786.091 kb on - strand, within Pf6N2E2_3282 at 3786.577 kb on + strand, within Pf6N2E2_3282 at 3786.577 kb on + strand, within Pf6N2E2_3282 at 3786.577 kb on + strand, within Pf6N2E2_3282 at 3786.578 kb on - strand, within Pf6N2E2_3282 at 3788.223 kb on + strand, within Pf6N2E2_3282 at 3788.590 kb on + strand, within Pf6N2E2_3282 at 3789.566 kb on - strand at 3789.566 kb on - strand at 3789.566 kb on - strand at 3789.566 kb on - strand at 3789.581 kb on - strand at 3789.696 kb on - strand, within Pf6N2E2_3283 at 3789.696 kb on - strand, within Pf6N2E2_3283 at 3789.696 kb on - strand, within Pf6N2E2_3283 at 3789.696 kb on - strand, within Pf6N2E2_3283 at 3789.696 kb on - strand, within Pf6N2E2_3283 at 3789.696 kb on - strand, within Pf6N2E2_3283 at 3789.698 kb on - strand, within Pf6N2E2_3283 at 3789.698 kb on - strand, within Pf6N2E2_3283 at 3789.698 kb on - strand, within Pf6N2E2_3283 at 3789.698 kb on - strand, within Pf6N2E2_3283 at 3790.238 kb on - strand, within Pf6N2E2_3283 at 3790.388 kb on - strand, within Pf6N2E2_3283
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 3,784,682 + +0.6 3,784,928 + Pf6N2E2_3281 0.29 -0.1 3,784,928 + Pf6N2E2_3281 0.29 +0.0 3,784,928 + Pf6N2E2_3281 0.29 +0.2 3,784,928 + Pf6N2E2_3281 0.29 -0.3 3,784,928 + Pf6N2E2_3281 0.29 -1.2 3,784,928 + Pf6N2E2_3281 0.29 +0.3 3,784,928 + Pf6N2E2_3281 0.29 -0.0 3,784,928 + Pf6N2E2_3281 0.29 +0.5 3,784,929 - Pf6N2E2_3281 0.29 -0.8 3,784,929 - Pf6N2E2_3281 0.29 -0.2 3,784,929 - Pf6N2E2_3281 0.29 -0.2 3,784,963 + Pf6N2E2_3281 0.33 -0.8 3,784,963 + Pf6N2E2_3281 0.33 -0.4 3,785,049 - Pf6N2E2_3281 0.43 -0.0 3,785,049 - Pf6N2E2_3281 0.43 +1.1 3,785,133 - Pf6N2E2_3281 0.52 +1.4 3,785,133 - Pf6N2E2_3281 0.52 +1.1 3,785,133 - Pf6N2E2_3281 0.52 +0.3 3,785,138 + Pf6N2E2_3281 0.53 -0.8 3,785,138 + Pf6N2E2_3281 0.53 -0.5 3,785,138 + Pf6N2E2_3281 0.53 +1.3 3,785,138 + Pf6N2E2_3281 0.53 -0.3 3,785,138 + Pf6N2E2_3281 0.53 +0.4 3,785,139 - Pf6N2E2_3281 0.53 +1.9 3,785,139 - Pf6N2E2_3281 0.53 +0.7 3,785,565 + +0.8 3,785,631 - +0.7 3,785,631 - +0.5 3,785,631 - +1.1 3,785,631 - +0.1 3,785,702 + +0.6 3,785,969 - -0.4 3,786,011 - +1.7 3,786,014 + -0.2 3,786,014 + +1.8 3,786,015 - +0.1 3,786,091 - Pf6N2E2_3282 0.11 -1.3 3,786,577 + Pf6N2E2_3282 0.24 -0.4 3,786,577 + Pf6N2E2_3282 0.24 -1.2 3,786,577 + Pf6N2E2_3282 0.24 -0.8 3,786,578 - Pf6N2E2_3282 0.24 -1.3 3,788,223 + Pf6N2E2_3282 0.67 +0.4 3,788,590 + Pf6N2E2_3282 0.76 +0.4 3,789,566 - +2.1 3,789,566 - +2.1 3,789,566 - +3.4 3,789,566 - +2.9 3,789,581 - +3.1 3,789,696 - Pf6N2E2_3283 0.10 +2.8 3,789,696 - Pf6N2E2_3283 0.10 +1.9 3,789,696 - Pf6N2E2_3283 0.10 +3.6 3,789,696 - Pf6N2E2_3283 0.10 +1.8 3,789,696 - Pf6N2E2_3283 0.10 +3.0 3,789,696 - Pf6N2E2_3283 0.10 +2.4 3,789,698 - Pf6N2E2_3283 0.10 +1.8 3,789,698 - Pf6N2E2_3283 0.10 +2.1 3,789,698 - Pf6N2E2_3283 0.10 +2.8 3,789,698 - Pf6N2E2_3283 0.10 +1.7 3,790,238 - Pf6N2E2_3283 0.47 +2.9 3,790,388 - Pf6N2E2_3283 0.58 +3.4
Or see this region's nucleotide sequence