Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3252

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3251 and Pf6N2E2_3252 are separated by 1 nucleotidesPf6N2E2_3252 and Pf6N2E2_3253 are separated by 123 nucleotidesPf6N2E2_3253 and Pf6N2E2_3254 are separated by 127 nucleotides Pf6N2E2_3251 - histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data), at 3,761,418 to 3,762,470 _3251 Pf6N2E2_3252 - Histidinol dehydrogenase (EC 1.1.1.23), at 3,762,472 to 3,763,809 _3252 Pf6N2E2_3253 - ATP phosphoribosyltransferase (EC 2.4.2.17) (from data), at 3,763,933 to 3,764,568 _3253 Pf6N2E2_3254 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7), at 3,764,696 to 3,765,961 _3254 Position (kb) 3762 3763 3764Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3761.689 kb on + strand, within Pf6N2E2_3251at 3761.690 kb on - strand, within Pf6N2E2_3251at 3761.920 kb on + strand, within Pf6N2E2_3251at 3761.920 kb on + strand, within Pf6N2E2_3251at 3761.920 kb on + strand, within Pf6N2E2_3251at 3761.920 kb on + strand, within Pf6N2E2_3251at 3761.920 kb on + strand, within Pf6N2E2_3251at 3761.920 kb on + strand, within Pf6N2E2_3251at 3761.920 kb on + strand, within Pf6N2E2_3251at 3761.920 kb on + strand, within Pf6N2E2_3251at 3761.920 kb on + strand, within Pf6N2E2_3251at 3761.920 kb on + strand, within Pf6N2E2_3251at 3761.921 kb on - strand, within Pf6N2E2_3251at 3761.921 kb on - strand, within Pf6N2E2_3251at 3761.921 kb on - strand, within Pf6N2E2_3251at 3762.049 kb on + strand, within Pf6N2E2_3251at 3762.109 kb on + strand, within Pf6N2E2_3251at 3762.121 kb on + strand, within Pf6N2E2_3251at 3762.121 kb on + strand, within Pf6N2E2_3251at 3762.122 kb on - strand, within Pf6N2E2_3251at 3762.130 kb on + strand, within Pf6N2E2_3251at 3762.131 kb on - strand, within Pf6N2E2_3251at 3762.131 kb on - strand, within Pf6N2E2_3251at 3762.139 kb on + strand, within Pf6N2E2_3251at 3762.139 kb on + strand, within Pf6N2E2_3251at 3762.139 kb on + strand, within Pf6N2E2_3251at 3762.139 kb on + strand, within Pf6N2E2_3251at 3762.140 kb on - strand, within Pf6N2E2_3251at 3762.222 kb on - strand, within Pf6N2E2_3251at 3762.253 kb on + strand, within Pf6N2E2_3251at 3762.254 kb on - strand, within Pf6N2E2_3251at 3762.254 kb on - strand, within Pf6N2E2_3251at 3762.256 kb on + strand, within Pf6N2E2_3251at 3762.365 kb on - strandat 3762.427 kb on + strandat 3762.427 kb on + strandat 3762.638 kb on + strand, within Pf6N2E2_3252at 3762.638 kb on + strand, within Pf6N2E2_3252at 3762.638 kb on + strand, within Pf6N2E2_3252at 3762.638 kb on + strand, within Pf6N2E2_3252at 3762.638 kb on + strand, within Pf6N2E2_3252at 3762.639 kb on - strand, within Pf6N2E2_3252at 3763.145 kb on + strand, within Pf6N2E2_3252at 3763.145 kb on + strand, within Pf6N2E2_3252at 3763.145 kb on + strand, within Pf6N2E2_3252at 3763.145 kb on + strand, within Pf6N2E2_3252at 3763.145 kb on + strand, within Pf6N2E2_3252at 3763.145 kb on + strand, within Pf6N2E2_3252at 3763.145 kb on + strand, within Pf6N2E2_3252at 3763.145 kb on + strand, within Pf6N2E2_3252at 3763.145 kb on + strand, within Pf6N2E2_3252at 3763.145 kb on + strand, within Pf6N2E2_3252at 3763.146 kb on - strand, within Pf6N2E2_3252at 3763.146 kb on - strand, within Pf6N2E2_3252at 3763.146 kb on - strand, within Pf6N2E2_3252at 3763.146 kb on - strand, within Pf6N2E2_3252at 3763.146 kb on - strand, within Pf6N2E2_3252at 3763.379 kb on + strand, within Pf6N2E2_3252at 3763.404 kb on - strand, within Pf6N2E2_3252at 3763.404 kb on - strand, within Pf6N2E2_3252at 3763.852 kb on + strandat 3763.853 kb on - strandat 3763.853 kb on - strandat 3763.889 kb on + strandat 3764.159 kb on + strand, within Pf6N2E2_3253at 3764.159 kb on + strand, within Pf6N2E2_3253at 3764.159 kb on + strand, within Pf6N2E2_3253at 3764.160 kb on - strand, within Pf6N2E2_3253at 3764.160 kb on - strand, within Pf6N2E2_3253at 3764.160 kb on - strand, within Pf6N2E2_3253at 3764.199 kb on - strand, within Pf6N2E2_3253at 3764.201 kb on + strand, within Pf6N2E2_3253at 3764.202 kb on - strand, within Pf6N2E2_3253at 3764.202 kb on - strand, within Pf6N2E2_3253at 3764.396 kb on + strand, within Pf6N2E2_3253at 3764.396 kb on + strand, within Pf6N2E2_3253at 3764.396 kb on + strand, within Pf6N2E2_3253at 3764.396 kb on + strand, within Pf6N2E2_3253at 3764.585 kb on + strandat 3764.593 kb on + strandat 3764.594 kb on - strandat 3764.594 kb on - strandat 3764.594 kb on - strandat 3764.594 kb on - strandat 3764.697 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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3,761,689 + Pf6N2E2_3251 0.26 +1.3
3,761,690 - Pf6N2E2_3251 0.26 +0.9
3,761,920 + Pf6N2E2_3251 0.48 +2.2
3,761,920 + Pf6N2E2_3251 0.48 +0.8
3,761,920 + Pf6N2E2_3251 0.48 +0.5
3,761,920 + Pf6N2E2_3251 0.48 -0.2
3,761,920 + Pf6N2E2_3251 0.48 +0.4
3,761,920 + Pf6N2E2_3251 0.48 +1.7
3,761,920 + Pf6N2E2_3251 0.48 +0.6
3,761,920 + Pf6N2E2_3251 0.48 +1.4
3,761,920 + Pf6N2E2_3251 0.48 +1.5
3,761,920 + Pf6N2E2_3251 0.48 +1.7
3,761,921 - Pf6N2E2_3251 0.48 +1.0
3,761,921 - Pf6N2E2_3251 0.48 +1.2
3,761,921 - Pf6N2E2_3251 0.48 -0.2
3,762,049 + Pf6N2E2_3251 0.60 +0.6
3,762,109 + Pf6N2E2_3251 0.66 +0.9
3,762,121 + Pf6N2E2_3251 0.67 +1.4
3,762,121 + Pf6N2E2_3251 0.67 -0.4
3,762,122 - Pf6N2E2_3251 0.67 -0.5
3,762,130 + Pf6N2E2_3251 0.68 -0.6
3,762,131 - Pf6N2E2_3251 0.68 +1.0
3,762,131 - Pf6N2E2_3251 0.68 +0.9
3,762,139 + Pf6N2E2_3251 0.68 +1.2
3,762,139 + Pf6N2E2_3251 0.68 +1.5
3,762,139 + Pf6N2E2_3251 0.68 -1.0
3,762,139 + Pf6N2E2_3251 0.68 +1.0
3,762,140 - Pf6N2E2_3251 0.69 +2.5
3,762,222 - Pf6N2E2_3251 0.76 +0.7
3,762,253 + Pf6N2E2_3251 0.79 +1.8
3,762,254 - Pf6N2E2_3251 0.79 +1.5
3,762,254 - Pf6N2E2_3251 0.79 +1.6
3,762,256 + Pf6N2E2_3251 0.80 +1.2
3,762,365 - +1.1
3,762,427 + +1.2
3,762,427 + -0.1
3,762,638 + Pf6N2E2_3252 0.12 -2.9
3,762,638 + Pf6N2E2_3252 0.12 -2.2
3,762,638 + Pf6N2E2_3252 0.12 -3.0
3,762,638 + Pf6N2E2_3252 0.12 -2.0
3,762,638 + Pf6N2E2_3252 0.12 -2.7
3,762,639 - Pf6N2E2_3252 0.12 -1.8
3,763,145 + Pf6N2E2_3252 0.50 -1.9
3,763,145 + Pf6N2E2_3252 0.50 -1.7
3,763,145 + Pf6N2E2_3252 0.50 +0.2
3,763,145 + Pf6N2E2_3252 0.50 -1.9
3,763,145 + Pf6N2E2_3252 0.50 +0.1
3,763,145 + Pf6N2E2_3252 0.50 -2.7
3,763,145 + Pf6N2E2_3252 0.50 -0.7
3,763,145 + Pf6N2E2_3252 0.50 -2.2
3,763,145 + Pf6N2E2_3252 0.50 -2.4
3,763,145 + Pf6N2E2_3252 0.50 -1.4
3,763,146 - Pf6N2E2_3252 0.50 -2.1
3,763,146 - Pf6N2E2_3252 0.50 -2.8
3,763,146 - Pf6N2E2_3252 0.50 -1.1
3,763,146 - Pf6N2E2_3252 0.50 -2.9
3,763,146 - Pf6N2E2_3252 0.50 +0.8
3,763,379 + Pf6N2E2_3252 0.68 -2.4
3,763,404 - Pf6N2E2_3252 0.70 -1.6
3,763,404 - Pf6N2E2_3252 0.70 +0.1
3,763,852 + -2.1
3,763,853 - +1.2
3,763,853 - +0.6
3,763,889 + -1.2
3,764,159 + Pf6N2E2_3253 0.36 -1.2
3,764,159 + Pf6N2E2_3253 0.36 -3.0
3,764,159 + Pf6N2E2_3253 0.36 -2.5
3,764,160 - Pf6N2E2_3253 0.36 -0.7
3,764,160 - Pf6N2E2_3253 0.36 -3.1
3,764,160 - Pf6N2E2_3253 0.36 -1.9
3,764,199 - Pf6N2E2_3253 0.42 -0.8
3,764,201 + Pf6N2E2_3253 0.42 +0.6
3,764,202 - Pf6N2E2_3253 0.42 -3.1
3,764,202 - Pf6N2E2_3253 0.42 -1.8
3,764,396 + Pf6N2E2_3253 0.73 -2.0
3,764,396 + Pf6N2E2_3253 0.73 -1.1
3,764,396 + Pf6N2E2_3253 0.73 -2.6
3,764,396 + Pf6N2E2_3253 0.73 +0.8
3,764,585 + -2.1
3,764,593 + -2.4
3,764,594 - -0.0
3,764,594 - +0.7
3,764,594 - +1.3
3,764,594 - -0.2
3,764,697 + -0.6

Or see this region's nucleotide sequence