Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3132

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3131 and Pf6N2E2_3132 are separated by 146 nucleotidesPf6N2E2_3132 and Pf6N2E2_3133 overlap by 38 nucleotidesPf6N2E2_3133 and Pf6N2E2_3134 are separated by 44 nucleotidesPf6N2E2_3134 and Pf6N2E2_3135 are separated by 361 nucleotides Pf6N2E2_3131 - 4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19), at 3,622,501 to 3,623,925 _3131 Pf6N2E2_3132 - FIG00954548: hypothetical protein, at 3,624,072 to 3,624,335 _3132 Pf6N2E2_3133 - Death on curing protein, Doc toxin, at 3,624,298 to 3,624,597 _3133 Pf6N2E2_3134 - hypothetical protein, at 3,624,642 to 3,624,827 _3134 Pf6N2E2_3135 - Glucans biosynthesis protein D precursor, at 3,625,189 to 3,626,817 _3135 Position (kb) 3624 3625Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3623.087 kb on + strand, within Pf6N2E2_3131at 3623.088 kb on - strand, within Pf6N2E2_3131at 3623.088 kb on - strand, within Pf6N2E2_3131at 3623.320 kb on + strand, within Pf6N2E2_3131at 3623.321 kb on - strand, within Pf6N2E2_3131at 3623.359 kb on + strand, within Pf6N2E2_3131at 3623.360 kb on - strand, within Pf6N2E2_3131at 3623.360 kb on - strand, within Pf6N2E2_3131at 3623.360 kb on - strand, within Pf6N2E2_3131at 3623.377 kb on + strand, within Pf6N2E2_3131at 3623.377 kb on + strand, within Pf6N2E2_3131at 3623.378 kb on - strand, within Pf6N2E2_3131at 3623.378 kb on - strand, within Pf6N2E2_3131at 3623.425 kb on + strand, within Pf6N2E2_3131at 3623.425 kb on + strand, within Pf6N2E2_3131at 3623.425 kb on + strand, within Pf6N2E2_3131at 3623.426 kb on - strand, within Pf6N2E2_3131at 3623.529 kb on + strand, within Pf6N2E2_3131at 3623.529 kb on + strand, within Pf6N2E2_3131at 3623.530 kb on - strand, within Pf6N2E2_3131at 3623.530 kb on - strand, within Pf6N2E2_3131at 3623.530 kb on - strand, within Pf6N2E2_3131at 3623.530 kb on - strand, within Pf6N2E2_3131at 3623.684 kb on + strand, within Pf6N2E2_3131at 3623.684 kb on + strand, within Pf6N2E2_3131at 3623.684 kb on + strand, within Pf6N2E2_3131at 3623.685 kb on - strand, within Pf6N2E2_3131at 3623.685 kb on - strand, within Pf6N2E2_3131at 3623.685 kb on - strand, within Pf6N2E2_3131at 3623.779 kb on + strand, within Pf6N2E2_3131at 3623.779 kb on + strand, within Pf6N2E2_3131at 3623.780 kb on - strand, within Pf6N2E2_3131at 3623.780 kb on - strand, within Pf6N2E2_3131at 3623.875 kb on + strandat 3623.875 kb on + strandat 3623.875 kb on + strandat 3623.875 kb on + strandat 3623.875 kb on + strandat 3623.876 kb on - strandat 3623.876 kb on - strandat 3623.876 kb on - strandat 3623.876 kb on - strandat 3623.891 kb on - strandat 3623.980 kb on - strandat 3623.980 kb on - strandat 3623.980 kb on - strandat 3624.044 kb on + strandat 3624.051 kb on + strandat 3624.052 kb on - strandat 3624.052 kb on - strandat 3624.052 kb on - strandat 3624.052 kb on - strandat 3624.052 kb on - strandat 3624.053 kb on + strandat 3624.053 kb on + strandat 3624.054 kb on - strandat 3624.054 kb on - strandat 3624.163 kb on - strand, within Pf6N2E2_3132at 3624.163 kb on - strand, within Pf6N2E2_3132at 3624.190 kb on - strand, within Pf6N2E2_3132at 3624.190 kb on - strand, within Pf6N2E2_3132at 3624.190 kb on - strand, within Pf6N2E2_3132at 3624.284 kb on + strand, within Pf6N2E2_3132at 3624.284 kb on + strand, within Pf6N2E2_3132at 3624.284 kb on + strand, within Pf6N2E2_3132at 3624.311 kb on + strandat 3624.311 kb on + strandat 3624.312 kb on - strandat 3624.680 kb on - strand, within Pf6N2E2_3134at 3624.816 kb on + strandat 3624.842 kb on + strandat 3624.842 kb on + strandat 3624.842 kb on + strandat 3624.907 kb on - strandat 3624.938 kb on + strandat 3624.943 kb on + strandat 3624.972 kb on + strandat 3624.973 kb on - strandat 3624.973 kb on - strandat 3624.984 kb on + strandat 3624.984 kb on + strandat 3624.985 kb on - strandat 3624.985 kb on - strandat 3625.035 kb on + strandat 3625.035 kb on + strandat 3625.036 kb on - strandat 3625.045 kb on - strandat 3625.083 kb on + strandat 3625.083 kb on + strandat 3625.083 kb on + strandat 3625.083 kb on + strandat 3625.083 kb on + strandat 3625.083 kb on + strandat 3625.083 kb on + strandat 3625.083 kb on + strandat 3625.084 kb on - strandat 3625.084 kb on - strandat 3625.092 kb on + strandat 3625.092 kb on + strandat 3625.092 kb on + strandat 3625.092 kb on + strandat 3625.092 kb on + strandat 3625.093 kb on - strandat 3625.093 kb on - strandat 3625.093 kb on - strandat 3625.135 kb on - strandat 3625.184 kb on + strandat 3625.184 kb on + strandat 3625.184 kb on + strandat 3625.184 kb on + strandat 3625.185 kb on - strandat 3625.185 kb on - strandat 3625.185 kb on - strandat 3625.185 kb on - strandat 3625.185 kb on - strandat 3625.185 kb on - strandat 3625.185 kb on - strandat 3625.185 kb on - strandat 3625.188 kb on + strandat 3625.188 kb on + strandat 3625.188 kb on + strandat 3625.188 kb on + strandat 3625.189 kb on - strandat 3625.189 kb on - strandat 3625.189 kb on - strandat 3625.189 kb on - strandat 3625.189 kb on - strandat 3625.235 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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3,623,087 + Pf6N2E2_3131 0.41 -0.1
3,623,088 - Pf6N2E2_3131 0.41 -0.4
3,623,088 - Pf6N2E2_3131 0.41 -0.9
3,623,320 + Pf6N2E2_3131 0.57 -0.1
3,623,321 - Pf6N2E2_3131 0.58 +0.7
3,623,359 + Pf6N2E2_3131 0.60 -0.8
3,623,360 - Pf6N2E2_3131 0.60 -0.3
3,623,360 - Pf6N2E2_3131 0.60 +0.0
3,623,360 - Pf6N2E2_3131 0.60 -0.1
3,623,377 + Pf6N2E2_3131 0.61 +0.8
3,623,377 + Pf6N2E2_3131 0.61 +1.0
3,623,378 - Pf6N2E2_3131 0.62 +0.3
3,623,378 - Pf6N2E2_3131 0.62 -0.1
3,623,425 + Pf6N2E2_3131 0.65 +1.2
3,623,425 + Pf6N2E2_3131 0.65 -0.7
3,623,425 + Pf6N2E2_3131 0.65 +0.6
3,623,426 - Pf6N2E2_3131 0.65 +1.3
3,623,529 + Pf6N2E2_3131 0.72 -0.8
3,623,529 + Pf6N2E2_3131 0.72 +0.2
3,623,530 - Pf6N2E2_3131 0.72 +1.5
3,623,530 - Pf6N2E2_3131 0.72 -0.9
3,623,530 - Pf6N2E2_3131 0.72 +0.1
3,623,530 - Pf6N2E2_3131 0.72 -0.1
3,623,684 + Pf6N2E2_3131 0.83 +0.1
3,623,684 + Pf6N2E2_3131 0.83 +0.7
3,623,684 + Pf6N2E2_3131 0.83 +0.4
3,623,685 - Pf6N2E2_3131 0.83 -0.5
3,623,685 - Pf6N2E2_3131 0.83 -2.2
3,623,685 - Pf6N2E2_3131 0.83 -1.1
3,623,779 + Pf6N2E2_3131 0.90 -0.6
3,623,779 + Pf6N2E2_3131 0.90 -0.4
3,623,780 - Pf6N2E2_3131 0.90 -0.2
3,623,780 - Pf6N2E2_3131 0.90 +0.5
3,623,875 + +0.3
3,623,875 + +0.3
3,623,875 + -0.8
3,623,875 + +0.4
3,623,875 + -0.1
3,623,876 - +0.7
3,623,876 - +0.1
3,623,876 - -0.6
3,623,876 - +0.5
3,623,891 - -1.3
3,623,980 - +0.9
3,623,980 - +1.7
3,623,980 - -0.7
3,624,044 + +0.7
3,624,051 + -0.9
3,624,052 - -1.6
3,624,052 - -1.4
3,624,052 - +1.3
3,624,052 - +0.0
3,624,052 - +0.0
3,624,053 + -0.8
3,624,053 + -1.0
3,624,054 - -1.1
3,624,054 - +0.3
3,624,163 - Pf6N2E2_3132 0.34 -1.1
3,624,163 - Pf6N2E2_3132 0.34 -0.4
3,624,190 - Pf6N2E2_3132 0.45 -0.3
3,624,190 - Pf6N2E2_3132 0.45 -1.9
3,624,190 - Pf6N2E2_3132 0.45 -1.1
3,624,284 + Pf6N2E2_3132 0.80 -1.8
3,624,284 + Pf6N2E2_3132 0.80 -1.6
3,624,284 + Pf6N2E2_3132 0.80 +0.3
3,624,311 + -0.2
3,624,311 + +0.0
3,624,312 - +0.1
3,624,680 - Pf6N2E2_3134 0.20 -0.5
3,624,816 + +0.5
3,624,842 + +0.2
3,624,842 + +0.3
3,624,842 + -1.1
3,624,907 - -0.7
3,624,938 + -0.5
3,624,943 + +0.8
3,624,972 + -0.3
3,624,973 - -0.5
3,624,973 - -0.3
3,624,984 + -1.4
3,624,984 + -1.4
3,624,985 - +0.4
3,624,985 - +0.3
3,625,035 + -0.4
3,625,035 + +0.7
3,625,036 - +0.4
3,625,045 - +0.7
3,625,083 + +1.2
3,625,083 + +0.7
3,625,083 + -0.5
3,625,083 + -0.6
3,625,083 + -1.6
3,625,083 + +0.8
3,625,083 + -0.1
3,625,083 + +0.1
3,625,084 - +0.6
3,625,084 - -0.8
3,625,092 + -1.4
3,625,092 + -2.4
3,625,092 + +0.9
3,625,092 + +0.6
3,625,092 + +3.3
3,625,093 - +1.4
3,625,093 - +0.5
3,625,093 - +0.7
3,625,135 - -0.4
3,625,184 + -0.4
3,625,184 + +0.7
3,625,184 + +0.6
3,625,184 + +1.5
3,625,185 - -1.3
3,625,185 - +0.3
3,625,185 - +0.0
3,625,185 - +0.7
3,625,185 - -1.4
3,625,185 - +0.4
3,625,185 - +0.5
3,625,185 - +0.5
3,625,188 + -0.5
3,625,188 + +0.3
3,625,188 + -0.1
3,625,188 + +0.2
3,625,189 - +0.3
3,625,189 - -1.1
3,625,189 - +1.1
3,625,189 - -0.1
3,625,189 - +1.0
3,625,235 - +0.6

Or see this region's nucleotide sequence