Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3060

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3059 and Pf6N2E2_3060 are separated by 3 nucleotidesPf6N2E2_3060 and Pf6N2E2_3061 are separated by 45 nucleotides Pf6N2E2_3059 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191), at 3,544,687 to 3,545,742 _3059 Pf6N2E2_3060 - Outer membrane protein H precursor, at 3,545,746 to 3,546,249 _3060 Pf6N2E2_3061 - Outer membrane protein assembly factor YaeT precursor, at 3,546,295 to 3,548,682 _3061 Position (kb) 3545 3546 3547Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3545.748 kb on - strandat 3546.123 kb on - strand, within Pf6N2E2_3060at 3546.162 kb on - strand, within Pf6N2E2_3060at 3546.162 kb on - strand, within Pf6N2E2_3060at 3546.244 kb on - strandat 3546.255 kb on - strandat 3546.261 kb on - strandat 3546.297 kb on - strandat 3546.297 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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3,545,748 - +0.3
3,546,123 - Pf6N2E2_3060 0.75 -1.8
3,546,162 - Pf6N2E2_3060 0.83 -2.7
3,546,162 - Pf6N2E2_3060 0.83 -3.2
3,546,244 - +0.7
3,546,255 - -1.3
3,546,261 - -0.8
3,546,297 - +1.2
3,546,297 - +2.1

Or see this region's nucleotide sequence