Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3032 and Pf6N2E2_3033 are separated by 583 nucleotides Pf6N2E2_3033 and Pf6N2E2_3034 are separated by 311 nucleotides Pf6N2E2_3034 and Pf6N2E2_3035 are separated by 27 nucleotides
Pf6N2E2_3032 - hypothetical protein, at 3,516,545 to 3,516,898
_3032
Pf6N2E2_3033 - hypothetical protein, at 3,517,482 to 3,517,649
_3033
Pf6N2E2_3034 - hypothetical protein, at 3,517,961 to 3,518,116
_3034
Pf6N2E2_3035 - DNA mismatch repair protein MutS, at 3,518,144 to 3,520,723
_3035
Position (kb)
3517
3518 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3516.482 kb on - strand at 3516.503 kb on + strand at 3516.504 kb on - strand at 3516.541 kb on + strand at 3516.542 kb on - strand at 3516.644 kb on + strand, within Pf6N2E2_3032 at 3516.644 kb on + strand, within Pf6N2E2_3032 at 3516.645 kb on - strand, within Pf6N2E2_3032 at 3516.647 kb on + strand, within Pf6N2E2_3032 at 3516.647 kb on + strand, within Pf6N2E2_3032 at 3516.647 kb on + strand, within Pf6N2E2_3032 at 3516.647 kb on + strand, within Pf6N2E2_3032 at 3516.648 kb on - strand, within Pf6N2E2_3032 at 3516.648 kb on - strand, within Pf6N2E2_3032 at 3516.648 kb on - strand, within Pf6N2E2_3032 at 3516.817 kb on + strand, within Pf6N2E2_3032 at 3516.817 kb on + strand, within Pf6N2E2_3032 at 3516.817 kb on + strand, within Pf6N2E2_3032 at 3516.818 kb on - strand, within Pf6N2E2_3032 at 3516.818 kb on - strand, within Pf6N2E2_3032 at 3516.818 kb on - strand, within Pf6N2E2_3032 at 3516.896 kb on + strand at 3516.896 kb on + strand at 3516.897 kb on - strand at 3516.921 kb on + strand at 3516.921 kb on + strand at 3516.922 kb on - strand at 3516.922 kb on - strand at 3517.049 kb on + strand at 3517.050 kb on - strand at 3517.173 kb on - strand at 3517.173 kb on - strand at 3517.173 kb on - strand at 3517.173 kb on - strand at 3517.243 kb on - strand at 3517.281 kb on - strand at 3517.284 kb on - strand at 3517.284 kb on - strand at 3517.284 kb on - strand at 3517.320 kb on + strand at 3517.320 kb on + strand at 3517.320 kb on + strand at 3517.324 kb on + strand at 3517.324 kb on + strand at 3517.324 kb on + strand at 3517.324 kb on + strand at 3517.324 kb on + strand at 3517.324 kb on + strand at 3517.481 kb on + strand at 3517.586 kb on - strand, within Pf6N2E2_3033 at 3517.586 kb on - strand, within Pf6N2E2_3033 at 3517.636 kb on + strand at 3517.683 kb on + strand at 3517.684 kb on - strand at 3517.842 kb on + strand at 3517.842 kb on + strand at 3517.843 kb on - strand at 3517.843 kb on - strand at 3517.843 kb on - strand at 3517.843 kb on - strand at 3517.843 kb on - strand at 3517.932 kb on - strand at 3517.932 kb on - strand at 3517.992 kb on + strand, within Pf6N2E2_3034 at 3517.992 kb on + strand, within Pf6N2E2_3034 at 3517.992 kb on + strand, within Pf6N2E2_3034 at 3517.992 kb on + strand, within Pf6N2E2_3034 at 3517.992 kb on + strand, within Pf6N2E2_3034 at 3517.992 kb on + strand, within Pf6N2E2_3034 at 3517.993 kb on - strand, within Pf6N2E2_3034 at 3517.993 kb on - strand, within Pf6N2E2_3034 at 3517.993 kb on - strand, within Pf6N2E2_3034 at 3517.993 kb on - strand, within Pf6N2E2_3034 at 3517.993 kb on - strand, within Pf6N2E2_3034 at 3517.996 kb on + strand, within Pf6N2E2_3034 at 3517.996 kb on + strand, within Pf6N2E2_3034 at 3517.997 kb on - strand, within Pf6N2E2_3034 at 3517.997 kb on - strand, within Pf6N2E2_3034 at 3518.018 kb on + strand, within Pf6N2E2_3034 at 3518.116 kb on + strand at 3518.116 kb on + strand at 3518.116 kb on + strand at 3518.150 kb on - strand at 3518.195 kb on + strand at 3518.196 kb on - strand at 3518.196 kb on - strand at 3518.256 kb on - strand at 3518.256 kb on - strand at 3518.256 kb on - strand at 3518.267 kb on + strand at 3518.268 kb on - strand at 3518.268 kb on - strand at 3518.363 kb on + strand at 3518.364 kb on - strand at 3518.382 kb on - strand at 3518.498 kb on - strand, within Pf6N2E2_3035
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 3,516,482 - +0.2 3,516,503 + -1.0 3,516,504 - +0.7 3,516,541 + +0.1 3,516,542 - -0.0 3,516,644 + Pf6N2E2_3032 0.28 -0.3 3,516,644 + Pf6N2E2_3032 0.28 +0.6 3,516,645 - Pf6N2E2_3032 0.28 +0.9 3,516,647 + Pf6N2E2_3032 0.29 +1.2 3,516,647 + Pf6N2E2_3032 0.29 +0.1 3,516,647 + Pf6N2E2_3032 0.29 -0.2 3,516,647 + Pf6N2E2_3032 0.29 -1.2 3,516,648 - Pf6N2E2_3032 0.29 +2.0 3,516,648 - Pf6N2E2_3032 0.29 +0.2 3,516,648 - Pf6N2E2_3032 0.29 +0.5 3,516,817 + Pf6N2E2_3032 0.77 -0.4 3,516,817 + Pf6N2E2_3032 0.77 +0.1 3,516,817 + Pf6N2E2_3032 0.77 +0.8 3,516,818 - Pf6N2E2_3032 0.77 -1.5 3,516,818 - Pf6N2E2_3032 0.77 +0.4 3,516,818 - Pf6N2E2_3032 0.77 +0.5 3,516,896 + +0.6 3,516,896 + +0.8 3,516,897 - +0.7 3,516,921 + -0.4 3,516,921 + +1.3 3,516,922 - -1.0 3,516,922 - -0.2 3,517,049 + +0.4 3,517,050 - +0.4 3,517,173 - +0.0 3,517,173 - +0.4 3,517,173 - -1.1 3,517,173 - -1.2 3,517,243 - +0.9 3,517,281 - +0.2 3,517,284 - -0.9 3,517,284 - +0.7 3,517,284 - +0.3 3,517,320 + +1.1 3,517,320 + +0.1 3,517,320 + +0.0 3,517,324 + -0.3 3,517,324 + +1.1 3,517,324 + +0.2 3,517,324 + +0.7 3,517,324 + -1.7 3,517,324 + +0.2 3,517,481 + +0.9 3,517,586 - Pf6N2E2_3033 0.62 +0.3 3,517,586 - Pf6N2E2_3033 0.62 -0.8 3,517,636 + -0.1 3,517,683 + -0.2 3,517,684 - +1.5 3,517,842 + -0.0 3,517,842 + +0.1 3,517,843 - +0.2 3,517,843 - +0.8 3,517,843 - +0.2 3,517,843 - -2.2 3,517,843 - +1.0 3,517,932 - -0.5 3,517,932 - +0.3 3,517,992 + Pf6N2E2_3034 0.20 +0.4 3,517,992 + Pf6N2E2_3034 0.20 +1.0 3,517,992 + Pf6N2E2_3034 0.20 +1.3 3,517,992 + Pf6N2E2_3034 0.20 -0.5 3,517,992 + Pf6N2E2_3034 0.20 -0.7 3,517,992 + Pf6N2E2_3034 0.20 -0.2 3,517,993 - Pf6N2E2_3034 0.21 -0.7 3,517,993 - Pf6N2E2_3034 0.21 -2.5 3,517,993 - Pf6N2E2_3034 0.21 -1.7 3,517,993 - Pf6N2E2_3034 0.21 +0.2 3,517,993 - Pf6N2E2_3034 0.21 +1.2 3,517,996 + Pf6N2E2_3034 0.22 +1.6 3,517,996 + Pf6N2E2_3034 0.22 +1.1 3,517,997 - Pf6N2E2_3034 0.23 +2.3 3,517,997 - Pf6N2E2_3034 0.23 -0.4 3,518,018 + Pf6N2E2_3034 0.37 +0.6 3,518,116 + +0.1 3,518,116 + +0.6 3,518,116 + +0.7 3,518,150 - -0.9 3,518,195 + +0.5 3,518,196 - +0.9 3,518,196 - +0.7 3,518,256 - +0.6 3,518,256 - +1.2 3,518,256 - +0.5 3,518,267 + -0.2 3,518,268 - +0.5 3,518,268 - -0.2 3,518,363 + +1.7 3,518,364 - -0.3 3,518,382 - -0.8 3,518,498 - Pf6N2E2_3035 0.14 -0.0
Or see this region's nucleotide sequence