Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3033

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3032 and Pf6N2E2_3033 are separated by 583 nucleotidesPf6N2E2_3033 and Pf6N2E2_3034 are separated by 311 nucleotidesPf6N2E2_3034 and Pf6N2E2_3035 are separated by 27 nucleotides Pf6N2E2_3032 - hypothetical protein, at 3,516,545 to 3,516,898 _3032 Pf6N2E2_3033 - hypothetical protein, at 3,517,482 to 3,517,649 _3033 Pf6N2E2_3034 - hypothetical protein, at 3,517,961 to 3,518,116 _3034 Pf6N2E2_3035 - DNA mismatch repair protein MutS, at 3,518,144 to 3,520,723 _3035 Position (kb) 3517 3518Strain fitness (log2 ratio) -2 -1 0 1 2at 3516.482 kb on - strandat 3516.503 kb on + strandat 3516.504 kb on - strandat 3516.541 kb on + strandat 3516.542 kb on - strandat 3516.644 kb on + strand, within Pf6N2E2_3032at 3516.644 kb on + strand, within Pf6N2E2_3032at 3516.645 kb on - strand, within Pf6N2E2_3032at 3516.647 kb on + strand, within Pf6N2E2_3032at 3516.647 kb on + strand, within Pf6N2E2_3032at 3516.647 kb on + strand, within Pf6N2E2_3032at 3516.647 kb on + strand, within Pf6N2E2_3032at 3516.648 kb on - strand, within Pf6N2E2_3032at 3516.648 kb on - strand, within Pf6N2E2_3032at 3516.648 kb on - strand, within Pf6N2E2_3032at 3516.817 kb on + strand, within Pf6N2E2_3032at 3516.817 kb on + strand, within Pf6N2E2_3032at 3516.817 kb on + strand, within Pf6N2E2_3032at 3516.818 kb on - strand, within Pf6N2E2_3032at 3516.818 kb on - strand, within Pf6N2E2_3032at 3516.818 kb on - strand, within Pf6N2E2_3032at 3516.896 kb on + strandat 3516.896 kb on + strandat 3516.897 kb on - strandat 3516.921 kb on + strandat 3516.921 kb on + strandat 3516.922 kb on - strandat 3516.922 kb on - strandat 3517.049 kb on + strandat 3517.050 kb on - strandat 3517.173 kb on - strandat 3517.173 kb on - strandat 3517.173 kb on - strandat 3517.173 kb on - strandat 3517.243 kb on - strandat 3517.281 kb on - strandat 3517.284 kb on - strandat 3517.284 kb on - strandat 3517.284 kb on - strandat 3517.320 kb on + strandat 3517.320 kb on + strandat 3517.320 kb on + strandat 3517.324 kb on + strandat 3517.324 kb on + strandat 3517.324 kb on + strandat 3517.324 kb on + strandat 3517.324 kb on + strandat 3517.324 kb on + strandat 3517.481 kb on + strandat 3517.586 kb on - strand, within Pf6N2E2_3033at 3517.586 kb on - strand, within Pf6N2E2_3033at 3517.636 kb on + strandat 3517.683 kb on + strandat 3517.684 kb on - strandat 3517.842 kb on + strandat 3517.842 kb on + strandat 3517.843 kb on - strandat 3517.843 kb on - strandat 3517.843 kb on - strandat 3517.843 kb on - strandat 3517.843 kb on - strandat 3517.932 kb on - strandat 3517.932 kb on - strandat 3517.992 kb on + strand, within Pf6N2E2_3034at 3517.992 kb on + strand, within Pf6N2E2_3034at 3517.992 kb on + strand, within Pf6N2E2_3034at 3517.992 kb on + strand, within Pf6N2E2_3034at 3517.992 kb on + strand, within Pf6N2E2_3034at 3517.992 kb on + strand, within Pf6N2E2_3034at 3517.993 kb on - strand, within Pf6N2E2_3034at 3517.993 kb on - strand, within Pf6N2E2_3034at 3517.993 kb on - strand, within Pf6N2E2_3034at 3517.993 kb on - strand, within Pf6N2E2_3034at 3517.993 kb on - strand, within Pf6N2E2_3034at 3517.996 kb on + strand, within Pf6N2E2_3034at 3517.996 kb on + strand, within Pf6N2E2_3034at 3517.997 kb on - strand, within Pf6N2E2_3034at 3517.997 kb on - strand, within Pf6N2E2_3034at 3518.018 kb on + strand, within Pf6N2E2_3034at 3518.116 kb on + strandat 3518.116 kb on + strandat 3518.116 kb on + strandat 3518.150 kb on - strandat 3518.195 kb on + strandat 3518.196 kb on - strandat 3518.196 kb on - strandat 3518.256 kb on - strandat 3518.256 kb on - strandat 3518.256 kb on - strandat 3518.267 kb on + strandat 3518.268 kb on - strandat 3518.268 kb on - strandat 3518.363 kb on + strandat 3518.364 kb on - strandat 3518.382 kb on - strandat 3518.498 kb on - strand, within Pf6N2E2_3035

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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3,516,482 - +0.2
3,516,503 + -1.0
3,516,504 - +0.7
3,516,541 + +0.1
3,516,542 - -0.0
3,516,644 + Pf6N2E2_3032 0.28 -0.3
3,516,644 + Pf6N2E2_3032 0.28 +0.6
3,516,645 - Pf6N2E2_3032 0.28 +0.9
3,516,647 + Pf6N2E2_3032 0.29 +1.2
3,516,647 + Pf6N2E2_3032 0.29 +0.1
3,516,647 + Pf6N2E2_3032 0.29 -0.2
3,516,647 + Pf6N2E2_3032 0.29 -1.2
3,516,648 - Pf6N2E2_3032 0.29 +2.0
3,516,648 - Pf6N2E2_3032 0.29 +0.2
3,516,648 - Pf6N2E2_3032 0.29 +0.5
3,516,817 + Pf6N2E2_3032 0.77 -0.4
3,516,817 + Pf6N2E2_3032 0.77 +0.1
3,516,817 + Pf6N2E2_3032 0.77 +0.8
3,516,818 - Pf6N2E2_3032 0.77 -1.5
3,516,818 - Pf6N2E2_3032 0.77 +0.4
3,516,818 - Pf6N2E2_3032 0.77 +0.5
3,516,896 + +0.6
3,516,896 + +0.8
3,516,897 - +0.7
3,516,921 + -0.4
3,516,921 + +1.3
3,516,922 - -1.0
3,516,922 - -0.2
3,517,049 + +0.4
3,517,050 - +0.4
3,517,173 - +0.0
3,517,173 - +0.4
3,517,173 - -1.1
3,517,173 - -1.2
3,517,243 - +0.9
3,517,281 - +0.2
3,517,284 - -0.9
3,517,284 - +0.7
3,517,284 - +0.3
3,517,320 + +1.1
3,517,320 + +0.1
3,517,320 + +0.0
3,517,324 + -0.3
3,517,324 + +1.1
3,517,324 + +0.2
3,517,324 + +0.7
3,517,324 + -1.7
3,517,324 + +0.2
3,517,481 + +0.9
3,517,586 - Pf6N2E2_3033 0.62 +0.3
3,517,586 - Pf6N2E2_3033 0.62 -0.8
3,517,636 + -0.1
3,517,683 + -0.2
3,517,684 - +1.5
3,517,842 + -0.0
3,517,842 + +0.1
3,517,843 - +0.2
3,517,843 - +0.8
3,517,843 - +0.2
3,517,843 - -2.2
3,517,843 - +1.0
3,517,932 - -0.5
3,517,932 - +0.3
3,517,992 + Pf6N2E2_3034 0.20 +0.4
3,517,992 + Pf6N2E2_3034 0.20 +1.0
3,517,992 + Pf6N2E2_3034 0.20 +1.3
3,517,992 + Pf6N2E2_3034 0.20 -0.5
3,517,992 + Pf6N2E2_3034 0.20 -0.7
3,517,992 + Pf6N2E2_3034 0.20 -0.2
3,517,993 - Pf6N2E2_3034 0.21 -0.7
3,517,993 - Pf6N2E2_3034 0.21 -2.5
3,517,993 - Pf6N2E2_3034 0.21 -1.7
3,517,993 - Pf6N2E2_3034 0.21 +0.2
3,517,993 - Pf6N2E2_3034 0.21 +1.2
3,517,996 + Pf6N2E2_3034 0.22 +1.6
3,517,996 + Pf6N2E2_3034 0.22 +1.1
3,517,997 - Pf6N2E2_3034 0.23 +2.3
3,517,997 - Pf6N2E2_3034 0.23 -0.4
3,518,018 + Pf6N2E2_3034 0.37 +0.6
3,518,116 + +0.1
3,518,116 + +0.6
3,518,116 + +0.7
3,518,150 - -0.9
3,518,195 + +0.5
3,518,196 - +0.9
3,518,196 - +0.7
3,518,256 - +0.6
3,518,256 - +1.2
3,518,256 - +0.5
3,518,267 + -0.2
3,518,268 - +0.5
3,518,268 - -0.2
3,518,363 + +1.7
3,518,364 - -0.3
3,518,382 - -0.8
3,518,498 - Pf6N2E2_3035 0.14 -0.0

Or see this region's nucleotide sequence