Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2975 and Pf6N2E2_2976 are separated by 26 nucleotides Pf6N2E2_2976 and Pf6N2E2_2977 are separated by 360 nucleotides
Pf6N2E2_2975 - membrane protein, putative, at 3,467,314 to 3,469,956
_2975
Pf6N2E2_2976 - Type IV secretory pathway, VirJ component, at 3,469,983 to 3,471,245
_2976
Pf6N2E2_2977 - Kup system potassium uptake protein, at 3,471,606 to 3,473,507
_2977
Position (kb)
3469
3470
3471
3472 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3469.090 kb on + strand, within Pf6N2E2_2975 at 3469.090 kb on + strand, within Pf6N2E2_2975 at 3469.090 kb on + strand, within Pf6N2E2_2975 at 3469.090 kb on + strand, within Pf6N2E2_2975 at 3469.090 kb on + strand, within Pf6N2E2_2975 at 3469.090 kb on + strand, within Pf6N2E2_2975 at 3469.090 kb on + strand, within Pf6N2E2_2975 at 3469.091 kb on - strand, within Pf6N2E2_2975 at 3469.091 kb on - strand, within Pf6N2E2_2975 at 3469.091 kb on - strand, within Pf6N2E2_2975 at 3469.091 kb on - strand, within Pf6N2E2_2975 at 3469.123 kb on + strand, within Pf6N2E2_2975 at 3469.123 kb on + strand, within Pf6N2E2_2975 at 3469.124 kb on - strand, within Pf6N2E2_2975 at 3469.124 kb on - strand, within Pf6N2E2_2975 at 3469.213 kb on + strand, within Pf6N2E2_2975 at 3469.214 kb on - strand, within Pf6N2E2_2975 at 3469.214 kb on - strand, within Pf6N2E2_2975 at 3469.214 kb on - strand, within Pf6N2E2_2975 at 3469.214 kb on - strand, within Pf6N2E2_2975 at 3469.220 kb on + strand, within Pf6N2E2_2975 at 3469.220 kb on + strand, within Pf6N2E2_2975 at 3469.221 kb on - strand, within Pf6N2E2_2975 at 3469.221 kb on - strand, within Pf6N2E2_2975 at 3469.240 kb on + strand, within Pf6N2E2_2975 at 3469.240 kb on + strand, within Pf6N2E2_2975 at 3469.241 kb on - strand, within Pf6N2E2_2975 at 3469.243 kb on + strand, within Pf6N2E2_2975 at 3469.243 kb on + strand, within Pf6N2E2_2975 at 3469.243 kb on + strand, within Pf6N2E2_2975 at 3469.243 kb on + strand, within Pf6N2E2_2975 at 3469.243 kb on + strand, within Pf6N2E2_2975 at 3469.243 kb on + strand, within Pf6N2E2_2975 at 3469.244 kb on - strand, within Pf6N2E2_2975 at 3469.244 kb on - strand, within Pf6N2E2_2975 at 3469.244 kb on - strand, within Pf6N2E2_2975 at 3469.244 kb on - strand, within Pf6N2E2_2975 at 3469.348 kb on + strand, within Pf6N2E2_2975 at 3469.504 kb on + strand, within Pf6N2E2_2975 at 3469.504 kb on + strand, within Pf6N2E2_2975 at 3469.505 kb on - strand, within Pf6N2E2_2975 at 3469.505 kb on - strand, within Pf6N2E2_2975 at 3469.505 kb on - strand, within Pf6N2E2_2975 at 3469.675 kb on + strand, within Pf6N2E2_2975 at 3469.675 kb on + strand, within Pf6N2E2_2975 at 3469.675 kb on + strand, within Pf6N2E2_2975 at 3469.675 kb on + strand, within Pf6N2E2_2975 at 3469.676 kb on - strand, within Pf6N2E2_2975 at 3469.677 kb on + strand, within Pf6N2E2_2975 at 3469.677 kb on + strand, within Pf6N2E2_2975 at 3469.677 kb on + strand, within Pf6N2E2_2975 at 3469.678 kb on - strand, within Pf6N2E2_2975 at 3469.691 kb on - strand, within Pf6N2E2_2975 at 3469.691 kb on - strand, within Pf6N2E2_2975 at 3469.801 kb on + strand at 3469.801 kb on + strand at 3469.801 kb on + strand at 3469.803 kb on + strand at 3469.803 kb on + strand at 3469.861 kb on + strand at 3469.861 kb on + strand at 3469.861 kb on + strand at 3469.862 kb on - strand at 3469.862 kb on - strand at 3469.862 kb on - strand at 3469.862 kb on - strand at 3469.981 kb on + strand at 3469.981 kb on + strand at 3469.981 kb on + strand at 3469.981 kb on + strand at 3469.981 kb on + strand at 3469.982 kb on - strand at 3469.982 kb on - strand at 3469.982 kb on - strand at 3469.982 kb on - strand at 3469.982 kb on - strand at 3470.031 kb on + strand at 3470.134 kb on + strand, within Pf6N2E2_2976 at 3470.134 kb on + strand, within Pf6N2E2_2976 at 3470.134 kb on + strand, within Pf6N2E2_2976 at 3470.134 kb on + strand, within Pf6N2E2_2976 at 3470.135 kb on - strand, within Pf6N2E2_2976 at 3470.498 kb on - strand, within Pf6N2E2_2976 at 3470.498 kb on - strand, within Pf6N2E2_2976 at 3470.535 kb on + strand, within Pf6N2E2_2976 at 3470.536 kb on - strand, within Pf6N2E2_2976 at 3470.536 kb on - strand, within Pf6N2E2_2976 at 3470.770 kb on - strand, within Pf6N2E2_2976 at 3470.773 kb on - strand, within Pf6N2E2_2976 at 3470.773 kb on - strand, within Pf6N2E2_2976 at 3470.874 kb on + strand, within Pf6N2E2_2976 at 3470.907 kb on + strand, within Pf6N2E2_2976 at 3470.907 kb on + strand, within Pf6N2E2_2976 at 3470.907 kb on + strand, within Pf6N2E2_2976 at 3470.907 kb on + strand, within Pf6N2E2_2976 at 3470.907 kb on + strand, within Pf6N2E2_2976 at 3470.907 kb on + strand, within Pf6N2E2_2976 at 3470.907 kb on + strand, within Pf6N2E2_2976 at 3470.907 kb on + strand, within Pf6N2E2_2976 at 3470.907 kb on + strand, within Pf6N2E2_2976 at 3470.908 kb on - strand, within Pf6N2E2_2976 at 3470.908 kb on - strand, within Pf6N2E2_2976 at 3471.081 kb on + strand, within Pf6N2E2_2976 at 3471.082 kb on - strand, within Pf6N2E2_2976 at 3471.178 kb on - strand at 3471.178 kb on - strand at 3471.243 kb on + strand at 3471.243 kb on + strand at 3471.244 kb on - strand at 3471.244 kb on - strand at 3471.244 kb on - strand at 3471.253 kb on + strand at 3471.253 kb on + strand at 3471.253 kb on + strand at 3471.253 kb on + strand at 3471.253 kb on + strand at 3471.254 kb on - strand at 3471.254 kb on - strand at 3471.254 kb on - strand at 3471.254 kb on - strand at 3471.254 kb on - strand at 3471.254 kb on - strand at 3471.254 kb on - strand at 3471.321 kb on + strand at 3471.330 kb on + strand at 3471.330 kb on + strand at 3471.330 kb on + strand at 3471.330 kb on + strand at 3471.330 kb on + strand at 3471.330 kb on + strand at 3471.330 kb on + strand at 3471.331 kb on - strand at 3471.331 kb on - strand at 3471.331 kb on - strand at 3471.331 kb on - strand at 3471.331 kb on - strand at 3471.331 kb on - strand at 3471.331 kb on - strand at 3471.331 kb on - strand at 3471.331 kb on - strand at 3471.331 kb on - strand at 3471.331 kb on - strand at 3471.331 kb on - strand at 3471.331 kb on - strand at 3471.512 kb on + strand at 3471.526 kb on + strand at 3471.526 kb on + strand at 3471.526 kb on + strand at 3471.526 kb on + strand at 3471.526 kb on + strand at 3471.526 kb on + strand at 3471.526 kb on + strand at 3471.553 kb on + strand at 3471.607 kb on + strand at 3471.607 kb on + strand at 3471.607 kb on + strand at 3471.607 kb on + strand at 3471.607 kb on + strand at 3471.607 kb on + strand at 3471.607 kb on + strand at 3471.608 kb on - strand at 3471.608 kb on - strand at 3471.608 kb on - strand at 3471.608 kb on - strand at 3471.608 kb on - strand at 3471.608 kb on - strand at 3471.608 kb on - strand at 3471.705 kb on + strand at 3471.706 kb on - strand at 3471.706 kb on - strand at 3471.706 kb on - strand at 3471.706 kb on - strand at 3471.706 kb on - strand at 3471.706 kb on - strand at 3471.769 kb on + strand at 3471.770 kb on - strand at 3471.770 kb on - strand at 3471.770 kb on - strand at 3471.770 kb on - strand at 3471.770 kb on - strand at 3471.770 kb on - strand at 3471.770 kb on - strand at 3471.940 kb on + strand, within Pf6N2E2_2977 at 3471.940 kb on + strand, within Pf6N2E2_2977 at 3471.941 kb on - strand, within Pf6N2E2_2977 at 3471.941 kb on - strand, within Pf6N2E2_2977 at 3471.990 kb on + strand, within Pf6N2E2_2977 at 3471.990 kb on + strand, within Pf6N2E2_2977 at 3471.990 kb on + strand, within Pf6N2E2_2977 at 3471.990 kb on + strand, within Pf6N2E2_2977 at 3471.990 kb on + strand, within Pf6N2E2_2977 at 3471.991 kb on - strand, within Pf6N2E2_2977 at 3471.991 kb on - strand, within Pf6N2E2_2977 at 3471.991 kb on - strand, within Pf6N2E2_2977 at 3471.991 kb on - strand, within Pf6N2E2_2977 at 3472.185 kb on - strand, within Pf6N2E2_2977 at 3472.243 kb on + strand, within Pf6N2E2_2977 at 3472.243 kb on + strand, within Pf6N2E2_2977 at 3472.244 kb on - strand, within Pf6N2E2_2977 at 3472.244 kb on - strand, within Pf6N2E2_2977
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 3,469,090 + Pf6N2E2_2975 0.67 +1.1 3,469,090 + Pf6N2E2_2975 0.67 -0.6 3,469,090 + Pf6N2E2_2975 0.67 -1.8 3,469,090 + Pf6N2E2_2975 0.67 +0.5 3,469,090 + Pf6N2E2_2975 0.67 +0.1 3,469,090 + Pf6N2E2_2975 0.67 -0.6 3,469,090 + Pf6N2E2_2975 0.67 +0.5 3,469,091 - Pf6N2E2_2975 0.67 +0.7 3,469,091 - Pf6N2E2_2975 0.67 +0.1 3,469,091 - Pf6N2E2_2975 0.67 +0.3 3,469,091 - Pf6N2E2_2975 0.67 +0.2 3,469,123 + Pf6N2E2_2975 0.68 -2.1 3,469,123 + Pf6N2E2_2975 0.68 -0.2 3,469,124 - Pf6N2E2_2975 0.68 +0.2 3,469,124 - Pf6N2E2_2975 0.68 +0.1 3,469,213 + Pf6N2E2_2975 0.72 +0.7 3,469,214 - Pf6N2E2_2975 0.72 -0.5 3,469,214 - Pf6N2E2_2975 0.72 +0.5 3,469,214 - Pf6N2E2_2975 0.72 -1.0 3,469,214 - Pf6N2E2_2975 0.72 +0.1 3,469,220 + Pf6N2E2_2975 0.72 +0.4 3,469,220 + Pf6N2E2_2975 0.72 +0.7 3,469,221 - Pf6N2E2_2975 0.72 +0.7 3,469,221 - Pf6N2E2_2975 0.72 +0.3 3,469,240 + Pf6N2E2_2975 0.73 +0.9 3,469,240 + Pf6N2E2_2975 0.73 +0.7 3,469,241 - Pf6N2E2_2975 0.73 +0.9 3,469,243 + Pf6N2E2_2975 0.73 -0.5 3,469,243 + Pf6N2E2_2975 0.73 -1.1 3,469,243 + Pf6N2E2_2975 0.73 -0.1 3,469,243 + Pf6N2E2_2975 0.73 +2.1 3,469,243 + Pf6N2E2_2975 0.73 +2.4 3,469,243 + Pf6N2E2_2975 0.73 +0.2 3,469,244 - Pf6N2E2_2975 0.73 +0.6 3,469,244 - Pf6N2E2_2975 0.73 -1.9 3,469,244 - Pf6N2E2_2975 0.73 +1.3 3,469,244 - Pf6N2E2_2975 0.73 -0.2 3,469,348 + Pf6N2E2_2975 0.77 +0.5 3,469,504 + Pf6N2E2_2975 0.83 -0.1 3,469,504 + Pf6N2E2_2975 0.83 -1.5 3,469,505 - Pf6N2E2_2975 0.83 +0.3 3,469,505 - Pf6N2E2_2975 0.83 -0.1 3,469,505 - Pf6N2E2_2975 0.83 -0.4 3,469,675 + Pf6N2E2_2975 0.89 -0.8 3,469,675 + Pf6N2E2_2975 0.89 +1.7 3,469,675 + Pf6N2E2_2975 0.89 -0.9 3,469,675 + Pf6N2E2_2975 0.89 +0.2 3,469,676 - Pf6N2E2_2975 0.89 +0.3 3,469,677 + Pf6N2E2_2975 0.89 +0.9 3,469,677 + Pf6N2E2_2975 0.89 +0.5 3,469,677 + Pf6N2E2_2975 0.89 -0.1 3,469,678 - Pf6N2E2_2975 0.89 +1.1 3,469,691 - Pf6N2E2_2975 0.90 +0.5 3,469,691 - Pf6N2E2_2975 0.90 +0.4 3,469,801 + -0.2 3,469,801 + +0.1 3,469,801 + +0.4 3,469,803 + +0.4 3,469,803 + -1.3 3,469,861 + +1.2 3,469,861 + -0.9 3,469,861 + +1.3 3,469,862 - +0.1 3,469,862 - -0.5 3,469,862 - -0.8 3,469,862 - +0.1 3,469,981 + +1.2 3,469,981 + -0.9 3,469,981 + -0.0 3,469,981 + +1.0 3,469,981 + +0.6 3,469,982 - +0.4 3,469,982 - -1.9 3,469,982 - -0.0 3,469,982 - +0.9 3,469,982 - -0.1 3,470,031 + +0.7 3,470,134 + Pf6N2E2_2976 0.12 -1.9 3,470,134 + Pf6N2E2_2976 0.12 +1.8 3,470,134 + Pf6N2E2_2976 0.12 -0.9 3,470,134 + Pf6N2E2_2976 0.12 +0.6 3,470,135 - Pf6N2E2_2976 0.12 +0.7 3,470,498 - Pf6N2E2_2976 0.41 +0.8 3,470,498 - Pf6N2E2_2976 0.41 -0.7 3,470,535 + Pf6N2E2_2976 0.44 -0.2 3,470,536 - Pf6N2E2_2976 0.44 +0.3 3,470,536 - Pf6N2E2_2976 0.44 -0.7 3,470,770 - Pf6N2E2_2976 0.62 -0.0 3,470,773 - Pf6N2E2_2976 0.63 -0.1 3,470,773 - Pf6N2E2_2976 0.63 -1.9 3,470,874 + Pf6N2E2_2976 0.71 -0.4 3,470,907 + Pf6N2E2_2976 0.73 -1.5 3,470,907 + Pf6N2E2_2976 0.73 -1.1 3,470,907 + Pf6N2E2_2976 0.73 +0.7 3,470,907 + Pf6N2E2_2976 0.73 -0.4 3,470,907 + Pf6N2E2_2976 0.73 +4.2 3,470,907 + Pf6N2E2_2976 0.73 -0.9 3,470,907 + Pf6N2E2_2976 0.73 -1.8 3,470,907 + Pf6N2E2_2976 0.73 +0.3 3,470,907 + Pf6N2E2_2976 0.73 -0.8 3,470,908 - Pf6N2E2_2976 0.73 -0.4 3,470,908 - Pf6N2E2_2976 0.73 +0.6 3,471,081 + Pf6N2E2_2976 0.87 +0.2 3,471,082 - Pf6N2E2_2976 0.87 -0.1 3,471,178 - +1.6 3,471,178 - -0.6 3,471,243 + +0.8 3,471,243 + -0.9 3,471,244 - -0.9 3,471,244 - +0.1 3,471,244 - +1.2 3,471,253 + -0.7 3,471,253 + -0.1 3,471,253 + -1.3 3,471,253 + -0.1 3,471,253 + -1.8 3,471,254 - +0.1 3,471,254 - +0.1 3,471,254 - +0.9 3,471,254 - -0.5 3,471,254 - +0.0 3,471,254 - +0.7 3,471,254 - +0.3 3,471,321 + -0.6 3,471,330 + -2.2 3,471,330 + +0.1 3,471,330 + +1.2 3,471,330 + -0.1 3,471,330 + -0.6 3,471,330 + -0.7 3,471,330 + +0.7 3,471,331 - +1.0 3,471,331 - -1.1 3,471,331 - -1.3 3,471,331 - +0.5 3,471,331 - -1.0 3,471,331 - -1.4 3,471,331 - -0.2 3,471,331 - -0.2 3,471,331 - -0.9 3,471,331 - +0.2 3,471,331 - -0.8 3,471,331 - +0.1 3,471,331 - -1.5 3,471,512 + -0.4 3,471,526 + +0.7 3,471,526 + -0.6 3,471,526 + +0.2 3,471,526 + -0.7 3,471,526 + +0.5 3,471,526 + +2.4 3,471,526 + +0.4 3,471,553 + -0.9 3,471,607 + +0.4 3,471,607 + +0.6 3,471,607 + -0.3 3,471,607 + +0.9 3,471,607 + -0.7 3,471,607 + -0.0 3,471,607 + +0.3 3,471,608 - -0.5 3,471,608 - +0.8 3,471,608 - -2.0 3,471,608 - +0.1 3,471,608 - -0.8 3,471,608 - +0.1 3,471,608 - -0.6 3,471,705 + -0.4 3,471,706 - -0.6 3,471,706 - +0.0 3,471,706 - -1.3 3,471,706 - -0.4 3,471,706 - -0.8 3,471,706 - -1.7 3,471,769 + -0.3 3,471,770 - +0.7 3,471,770 - -1.3 3,471,770 - +0.7 3,471,770 - -0.3 3,471,770 - +1.0 3,471,770 - +0.4 3,471,770 - -0.3 3,471,940 + Pf6N2E2_2977 0.18 -1.1 3,471,940 + Pf6N2E2_2977 0.18 +0.4 3,471,941 - Pf6N2E2_2977 0.18 -1.7 3,471,941 - Pf6N2E2_2977 0.18 +2.2 3,471,990 + Pf6N2E2_2977 0.20 -0.4 3,471,990 + Pf6N2E2_2977 0.20 +0.5 3,471,990 + Pf6N2E2_2977 0.20 +0.1 3,471,990 + Pf6N2E2_2977 0.20 +2.2 3,471,990 + Pf6N2E2_2977 0.20 -0.5 3,471,991 - Pf6N2E2_2977 0.20 -1.1 3,471,991 - Pf6N2E2_2977 0.20 -0.8 3,471,991 - Pf6N2E2_2977 0.20 +0.5 3,471,991 - Pf6N2E2_2977 0.20 +0.1 3,472,185 - Pf6N2E2_2977 0.30 +0.1 3,472,243 + Pf6N2E2_2977 0.33 +1.4 3,472,243 + Pf6N2E2_2977 0.33 +1.4 3,472,244 - Pf6N2E2_2977 0.34 -0.7 3,472,244 - Pf6N2E2_2977 0.34 -0.2
Or see this region's nucleotide sequence