Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2976

Experiment: D-Glucosamine Hydrochloride (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_2975 and Pf6N2E2_2976 are separated by 26 nucleotidesPf6N2E2_2976 and Pf6N2E2_2977 are separated by 360 nucleotides Pf6N2E2_2975 - membrane protein, putative, at 3,467,314 to 3,469,956 _2975 Pf6N2E2_2976 - Type IV secretory pathway, VirJ component, at 3,469,983 to 3,471,245 _2976 Pf6N2E2_2977 - Kup system potassium uptake protein, at 3,471,606 to 3,473,507 _2977 Position (kb) 3469 3470 3471 3472Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3469.090 kb on + strand, within Pf6N2E2_2975at 3469.090 kb on + strand, within Pf6N2E2_2975at 3469.090 kb on + strand, within Pf6N2E2_2975at 3469.090 kb on + strand, within Pf6N2E2_2975at 3469.090 kb on + strand, within Pf6N2E2_2975at 3469.090 kb on + strand, within Pf6N2E2_2975at 3469.090 kb on + strand, within Pf6N2E2_2975at 3469.091 kb on - strand, within Pf6N2E2_2975at 3469.091 kb on - strand, within Pf6N2E2_2975at 3469.091 kb on - strand, within Pf6N2E2_2975at 3469.091 kb on - strand, within Pf6N2E2_2975at 3469.123 kb on + strand, within Pf6N2E2_2975at 3469.123 kb on + strand, within Pf6N2E2_2975at 3469.124 kb on - strand, within Pf6N2E2_2975at 3469.124 kb on - strand, within Pf6N2E2_2975at 3469.213 kb on + strand, within Pf6N2E2_2975at 3469.214 kb on - strand, within Pf6N2E2_2975at 3469.214 kb on - strand, within Pf6N2E2_2975at 3469.214 kb on - strand, within Pf6N2E2_2975at 3469.214 kb on - strand, within Pf6N2E2_2975at 3469.220 kb on + strand, within Pf6N2E2_2975at 3469.220 kb on + strand, within Pf6N2E2_2975at 3469.221 kb on - strand, within Pf6N2E2_2975at 3469.221 kb on - strand, within Pf6N2E2_2975at 3469.240 kb on + strand, within Pf6N2E2_2975at 3469.240 kb on + strand, within Pf6N2E2_2975at 3469.241 kb on - strand, within Pf6N2E2_2975at 3469.243 kb on + strand, within Pf6N2E2_2975at 3469.243 kb on + strand, within Pf6N2E2_2975at 3469.243 kb on + strand, within Pf6N2E2_2975at 3469.243 kb on + strand, within Pf6N2E2_2975at 3469.243 kb on + strand, within Pf6N2E2_2975at 3469.243 kb on + strand, within Pf6N2E2_2975at 3469.244 kb on - strand, within Pf6N2E2_2975at 3469.244 kb on - strand, within Pf6N2E2_2975at 3469.244 kb on - strand, within Pf6N2E2_2975at 3469.244 kb on - strand, within Pf6N2E2_2975at 3469.348 kb on + strand, within Pf6N2E2_2975at 3469.504 kb on + strand, within Pf6N2E2_2975at 3469.504 kb on + strand, within Pf6N2E2_2975at 3469.505 kb on - strand, within Pf6N2E2_2975at 3469.505 kb on - strand, within Pf6N2E2_2975at 3469.505 kb on - strand, within Pf6N2E2_2975at 3469.675 kb on + strand, within Pf6N2E2_2975at 3469.675 kb on + strand, within Pf6N2E2_2975at 3469.675 kb on + strand, within Pf6N2E2_2975at 3469.675 kb on + strand, within Pf6N2E2_2975at 3469.676 kb on - strand, within Pf6N2E2_2975at 3469.677 kb on + strand, within Pf6N2E2_2975at 3469.677 kb on + strand, within Pf6N2E2_2975at 3469.677 kb on + strand, within Pf6N2E2_2975at 3469.678 kb on - strand, within Pf6N2E2_2975at 3469.691 kb on - strand, within Pf6N2E2_2975at 3469.691 kb on - strand, within Pf6N2E2_2975at 3469.801 kb on + strandat 3469.801 kb on + strandat 3469.801 kb on + strandat 3469.803 kb on + strandat 3469.803 kb on + strandat 3469.861 kb on + strandat 3469.861 kb on + strandat 3469.861 kb on + strandat 3469.862 kb on - strandat 3469.862 kb on - strandat 3469.862 kb on - strandat 3469.862 kb on - strandat 3469.981 kb on + strandat 3469.981 kb on + strandat 3469.981 kb on + strandat 3469.981 kb on + strandat 3469.981 kb on + strandat 3469.982 kb on - strandat 3469.982 kb on - strandat 3469.982 kb on - strandat 3469.982 kb on - strandat 3469.982 kb on - strandat 3470.031 kb on + strandat 3470.134 kb on + strand, within Pf6N2E2_2976at 3470.134 kb on + strand, within Pf6N2E2_2976at 3470.134 kb on + strand, within Pf6N2E2_2976at 3470.134 kb on + strand, within Pf6N2E2_2976at 3470.135 kb on - strand, within Pf6N2E2_2976at 3470.498 kb on - strand, within Pf6N2E2_2976at 3470.498 kb on - strand, within Pf6N2E2_2976at 3470.535 kb on + strand, within Pf6N2E2_2976at 3470.536 kb on - strand, within Pf6N2E2_2976at 3470.536 kb on - strand, within Pf6N2E2_2976at 3470.770 kb on - strand, within Pf6N2E2_2976at 3470.773 kb on - strand, within Pf6N2E2_2976at 3470.773 kb on - strand, within Pf6N2E2_2976at 3470.874 kb on + strand, within Pf6N2E2_2976at 3470.907 kb on + strand, within Pf6N2E2_2976at 3470.907 kb on + strand, within Pf6N2E2_2976at 3470.907 kb on + strand, within Pf6N2E2_2976at 3470.907 kb on + strand, within Pf6N2E2_2976at 3470.907 kb on + strand, within Pf6N2E2_2976at 3470.907 kb on + strand, within Pf6N2E2_2976at 3470.907 kb on + strand, within Pf6N2E2_2976at 3470.907 kb on + strand, within Pf6N2E2_2976at 3470.907 kb on + strand, within Pf6N2E2_2976at 3470.908 kb on - strand, within Pf6N2E2_2976at 3470.908 kb on - strand, within Pf6N2E2_2976at 3471.081 kb on + strand, within Pf6N2E2_2976at 3471.082 kb on - strand, within Pf6N2E2_2976at 3471.178 kb on - strandat 3471.178 kb on - strandat 3471.243 kb on + strandat 3471.243 kb on + strandat 3471.244 kb on - strandat 3471.244 kb on - strandat 3471.244 kb on - strandat 3471.253 kb on + strandat 3471.253 kb on + strandat 3471.253 kb on + strandat 3471.253 kb on + strandat 3471.253 kb on + strandat 3471.254 kb on - strandat 3471.254 kb on - strandat 3471.254 kb on - strandat 3471.254 kb on - strandat 3471.254 kb on - strandat 3471.254 kb on - strandat 3471.254 kb on - strandat 3471.321 kb on + strandat 3471.330 kb on + strandat 3471.330 kb on + strandat 3471.330 kb on + strandat 3471.330 kb on + strandat 3471.330 kb on + strandat 3471.330 kb on + strandat 3471.330 kb on + strandat 3471.331 kb on - strandat 3471.331 kb on - strandat 3471.331 kb on - strandat 3471.331 kb on - strandat 3471.331 kb on - strandat 3471.331 kb on - strandat 3471.331 kb on - strandat 3471.331 kb on - strandat 3471.331 kb on - strandat 3471.331 kb on - strandat 3471.331 kb on - strandat 3471.331 kb on - strandat 3471.331 kb on - strandat 3471.512 kb on + strandat 3471.526 kb on + strandat 3471.526 kb on + strandat 3471.526 kb on + strandat 3471.526 kb on + strandat 3471.526 kb on + strandat 3471.526 kb on + strandat 3471.526 kb on + strandat 3471.553 kb on + strandat 3471.607 kb on + strandat 3471.607 kb on + strandat 3471.607 kb on + strandat 3471.607 kb on + strandat 3471.607 kb on + strandat 3471.607 kb on + strandat 3471.607 kb on + strandat 3471.608 kb on - strandat 3471.608 kb on - strandat 3471.608 kb on - strandat 3471.608 kb on - strandat 3471.608 kb on - strandat 3471.608 kb on - strandat 3471.608 kb on - strandat 3471.705 kb on + strandat 3471.706 kb on - strandat 3471.706 kb on - strandat 3471.706 kb on - strandat 3471.706 kb on - strandat 3471.706 kb on - strandat 3471.706 kb on - strandat 3471.769 kb on + strandat 3471.770 kb on - strandat 3471.770 kb on - strandat 3471.770 kb on - strandat 3471.770 kb on - strandat 3471.770 kb on - strandat 3471.770 kb on - strandat 3471.770 kb on - strandat 3471.940 kb on + strand, within Pf6N2E2_2977at 3471.940 kb on + strand, within Pf6N2E2_2977at 3471.941 kb on - strand, within Pf6N2E2_2977at 3471.941 kb on - strand, within Pf6N2E2_2977at 3471.990 kb on + strand, within Pf6N2E2_2977at 3471.990 kb on + strand, within Pf6N2E2_2977at 3471.990 kb on + strand, within Pf6N2E2_2977at 3471.990 kb on + strand, within Pf6N2E2_2977at 3471.990 kb on + strand, within Pf6N2E2_2977at 3471.991 kb on - strand, within Pf6N2E2_2977at 3471.991 kb on - strand, within Pf6N2E2_2977at 3471.991 kb on - strand, within Pf6N2E2_2977at 3471.991 kb on - strand, within Pf6N2E2_2977at 3472.185 kb on - strand, within Pf6N2E2_2977at 3472.243 kb on + strand, within Pf6N2E2_2977at 3472.243 kb on + strand, within Pf6N2E2_2977at 3472.244 kb on - strand, within Pf6N2E2_2977at 3472.244 kb on - strand, within Pf6N2E2_2977

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
remove
3,469,090 + Pf6N2E2_2975 0.67 +1.1
3,469,090 + Pf6N2E2_2975 0.67 -0.6
3,469,090 + Pf6N2E2_2975 0.67 -1.8
3,469,090 + Pf6N2E2_2975 0.67 +0.5
3,469,090 + Pf6N2E2_2975 0.67 +0.1
3,469,090 + Pf6N2E2_2975 0.67 -0.6
3,469,090 + Pf6N2E2_2975 0.67 +0.5
3,469,091 - Pf6N2E2_2975 0.67 +0.7
3,469,091 - Pf6N2E2_2975 0.67 +0.1
3,469,091 - Pf6N2E2_2975 0.67 +0.3
3,469,091 - Pf6N2E2_2975 0.67 +0.2
3,469,123 + Pf6N2E2_2975 0.68 -2.1
3,469,123 + Pf6N2E2_2975 0.68 -0.2
3,469,124 - Pf6N2E2_2975 0.68 +0.2
3,469,124 - Pf6N2E2_2975 0.68 +0.1
3,469,213 + Pf6N2E2_2975 0.72 +0.7
3,469,214 - Pf6N2E2_2975 0.72 -0.5
3,469,214 - Pf6N2E2_2975 0.72 +0.5
3,469,214 - Pf6N2E2_2975 0.72 -1.0
3,469,214 - Pf6N2E2_2975 0.72 +0.1
3,469,220 + Pf6N2E2_2975 0.72 +0.4
3,469,220 + Pf6N2E2_2975 0.72 +0.7
3,469,221 - Pf6N2E2_2975 0.72 +0.7
3,469,221 - Pf6N2E2_2975 0.72 +0.3
3,469,240 + Pf6N2E2_2975 0.73 +0.9
3,469,240 + Pf6N2E2_2975 0.73 +0.7
3,469,241 - Pf6N2E2_2975 0.73 +0.9
3,469,243 + Pf6N2E2_2975 0.73 -0.5
3,469,243 + Pf6N2E2_2975 0.73 -1.1
3,469,243 + Pf6N2E2_2975 0.73 -0.1
3,469,243 + Pf6N2E2_2975 0.73 +2.1
3,469,243 + Pf6N2E2_2975 0.73 +2.4
3,469,243 + Pf6N2E2_2975 0.73 +0.2
3,469,244 - Pf6N2E2_2975 0.73 +0.6
3,469,244 - Pf6N2E2_2975 0.73 -1.9
3,469,244 - Pf6N2E2_2975 0.73 +1.3
3,469,244 - Pf6N2E2_2975 0.73 -0.2
3,469,348 + Pf6N2E2_2975 0.77 +0.5
3,469,504 + Pf6N2E2_2975 0.83 -0.1
3,469,504 + Pf6N2E2_2975 0.83 -1.5
3,469,505 - Pf6N2E2_2975 0.83 +0.3
3,469,505 - Pf6N2E2_2975 0.83 -0.1
3,469,505 - Pf6N2E2_2975 0.83 -0.4
3,469,675 + Pf6N2E2_2975 0.89 -0.8
3,469,675 + Pf6N2E2_2975 0.89 +1.7
3,469,675 + Pf6N2E2_2975 0.89 -0.9
3,469,675 + Pf6N2E2_2975 0.89 +0.2
3,469,676 - Pf6N2E2_2975 0.89 +0.3
3,469,677 + Pf6N2E2_2975 0.89 +0.9
3,469,677 + Pf6N2E2_2975 0.89 +0.5
3,469,677 + Pf6N2E2_2975 0.89 -0.1
3,469,678 - Pf6N2E2_2975 0.89 +1.1
3,469,691 - Pf6N2E2_2975 0.90 +0.5
3,469,691 - Pf6N2E2_2975 0.90 +0.4
3,469,801 + -0.2
3,469,801 + +0.1
3,469,801 + +0.4
3,469,803 + +0.4
3,469,803 + -1.3
3,469,861 + +1.2
3,469,861 + -0.9
3,469,861 + +1.3
3,469,862 - +0.1
3,469,862 - -0.5
3,469,862 - -0.8
3,469,862 - +0.1
3,469,981 + +1.2
3,469,981 + -0.9
3,469,981 + -0.0
3,469,981 + +1.0
3,469,981 + +0.6
3,469,982 - +0.4
3,469,982 - -1.9
3,469,982 - -0.0
3,469,982 - +0.9
3,469,982 - -0.1
3,470,031 + +0.7
3,470,134 + Pf6N2E2_2976 0.12 -1.9
3,470,134 + Pf6N2E2_2976 0.12 +1.8
3,470,134 + Pf6N2E2_2976 0.12 -0.9
3,470,134 + Pf6N2E2_2976 0.12 +0.6
3,470,135 - Pf6N2E2_2976 0.12 +0.7
3,470,498 - Pf6N2E2_2976 0.41 +0.8
3,470,498 - Pf6N2E2_2976 0.41 -0.7
3,470,535 + Pf6N2E2_2976 0.44 -0.2
3,470,536 - Pf6N2E2_2976 0.44 +0.3
3,470,536 - Pf6N2E2_2976 0.44 -0.7
3,470,770 - Pf6N2E2_2976 0.62 -0.0
3,470,773 - Pf6N2E2_2976 0.63 -0.1
3,470,773 - Pf6N2E2_2976 0.63 -1.9
3,470,874 + Pf6N2E2_2976 0.71 -0.4
3,470,907 + Pf6N2E2_2976 0.73 -1.5
3,470,907 + Pf6N2E2_2976 0.73 -1.1
3,470,907 + Pf6N2E2_2976 0.73 +0.7
3,470,907 + Pf6N2E2_2976 0.73 -0.4
3,470,907 + Pf6N2E2_2976 0.73 +4.2
3,470,907 + Pf6N2E2_2976 0.73 -0.9
3,470,907 + Pf6N2E2_2976 0.73 -1.8
3,470,907 + Pf6N2E2_2976 0.73 +0.3
3,470,907 + Pf6N2E2_2976 0.73 -0.8
3,470,908 - Pf6N2E2_2976 0.73 -0.4
3,470,908 - Pf6N2E2_2976 0.73 +0.6
3,471,081 + Pf6N2E2_2976 0.87 +0.2
3,471,082 - Pf6N2E2_2976 0.87 -0.1
3,471,178 - +1.6
3,471,178 - -0.6
3,471,243 + +0.8
3,471,243 + -0.9
3,471,244 - -0.9
3,471,244 - +0.1
3,471,244 - +1.2
3,471,253 + -0.7
3,471,253 + -0.1
3,471,253 + -1.3
3,471,253 + -0.1
3,471,253 + -1.8
3,471,254 - +0.1
3,471,254 - +0.1
3,471,254 - +0.9
3,471,254 - -0.5
3,471,254 - +0.0
3,471,254 - +0.7
3,471,254 - +0.3
3,471,321 + -0.6
3,471,330 + -2.2
3,471,330 + +0.1
3,471,330 + +1.2
3,471,330 + -0.1
3,471,330 + -0.6
3,471,330 + -0.7
3,471,330 + +0.7
3,471,331 - +1.0
3,471,331 - -1.1
3,471,331 - -1.3
3,471,331 - +0.5
3,471,331 - -1.0
3,471,331 - -1.4
3,471,331 - -0.2
3,471,331 - -0.2
3,471,331 - -0.9
3,471,331 - +0.2
3,471,331 - -0.8
3,471,331 - +0.1
3,471,331 - -1.5
3,471,512 + -0.4
3,471,526 + +0.7
3,471,526 + -0.6
3,471,526 + +0.2
3,471,526 + -0.7
3,471,526 + +0.5
3,471,526 + +2.4
3,471,526 + +0.4
3,471,553 + -0.9
3,471,607 + +0.4
3,471,607 + +0.6
3,471,607 + -0.3
3,471,607 + +0.9
3,471,607 + -0.7
3,471,607 + -0.0
3,471,607 + +0.3
3,471,608 - -0.5
3,471,608 - +0.8
3,471,608 - -2.0
3,471,608 - +0.1
3,471,608 - -0.8
3,471,608 - +0.1
3,471,608 - -0.6
3,471,705 + -0.4
3,471,706 - -0.6
3,471,706 - +0.0
3,471,706 - -1.3
3,471,706 - -0.4
3,471,706 - -0.8
3,471,706 - -1.7
3,471,769 + -0.3
3,471,770 - +0.7
3,471,770 - -1.3
3,471,770 - +0.7
3,471,770 - -0.3
3,471,770 - +1.0
3,471,770 - +0.4
3,471,770 - -0.3
3,471,940 + Pf6N2E2_2977 0.18 -1.1
3,471,940 + Pf6N2E2_2977 0.18 +0.4
3,471,941 - Pf6N2E2_2977 0.18 -1.7
3,471,941 - Pf6N2E2_2977 0.18 +2.2
3,471,990 + Pf6N2E2_2977 0.20 -0.4
3,471,990 + Pf6N2E2_2977 0.20 +0.5
3,471,990 + Pf6N2E2_2977 0.20 +0.1
3,471,990 + Pf6N2E2_2977 0.20 +2.2
3,471,990 + Pf6N2E2_2977 0.20 -0.5
3,471,991 - Pf6N2E2_2977 0.20 -1.1
3,471,991 - Pf6N2E2_2977 0.20 -0.8
3,471,991 - Pf6N2E2_2977 0.20 +0.5
3,471,991 - Pf6N2E2_2977 0.20 +0.1
3,472,185 - Pf6N2E2_2977 0.30 +0.1
3,472,243 + Pf6N2E2_2977 0.33 +1.4
3,472,243 + Pf6N2E2_2977 0.33 +1.4
3,472,244 - Pf6N2E2_2977 0.34 -0.7
3,472,244 - Pf6N2E2_2977 0.34 -0.2

Or see this region's nucleotide sequence