Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2961 and Pf6N2E2_2962 are separated by 13 nucleotides Pf6N2E2_2962 and Pf6N2E2_2963 are separated by 220 nucleotides
Pf6N2E2_2961 - Succinylglutamate desuccinylase/aspartoacylase, at 3,452,356 to 3,453,474
_2961
Pf6N2E2_2962 - ABC transporter for L-Lysine, ATPase component (from data) , at 3,453,488 to 3,454,252
_2962
Pf6N2E2_2963 - FIG003033: Helicase domain protein, at 3,454,473 to 3,456,959
_2963
Position (kb)
3453
3454
3455 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3452.890 kb on + strand, within Pf6N2E2_2961 at 3452.890 kb on + strand, within Pf6N2E2_2961 at 3452.890 kb on + strand, within Pf6N2E2_2961 at 3452.890 kb on + strand, within Pf6N2E2_2961 at 3452.891 kb on - strand, within Pf6N2E2_2961 at 3452.891 kb on - strand, within Pf6N2E2_2961 at 3452.891 kb on - strand, within Pf6N2E2_2961 at 3452.891 kb on - strand, within Pf6N2E2_2961 at 3452.891 kb on - strand, within Pf6N2E2_2961 at 3452.936 kb on - strand, within Pf6N2E2_2961 at 3452.936 kb on - strand, within Pf6N2E2_2961 at 3453.145 kb on + strand, within Pf6N2E2_2961 at 3453.265 kb on + strand, within Pf6N2E2_2961 at 3453.265 kb on + strand, within Pf6N2E2_2961 at 3453.266 kb on - strand, within Pf6N2E2_2961 at 3453.286 kb on + strand, within Pf6N2E2_2961 at 3453.286 kb on + strand, within Pf6N2E2_2961 at 3453.377 kb on - strand at 3453.377 kb on - strand at 3453.461 kb on + strand at 3453.461 kb on + strand at 3453.462 kb on - strand at 3453.462 kb on - strand at 3453.462 kb on - strand at 3453.462 kb on - strand at 3453.462 kb on - strand at 3453.462 kb on - strand at 3453.491 kb on + strand at 3453.492 kb on - strand at 3453.492 kb on - strand at 3453.517 kb on + strand at 3453.517 kb on + strand at 3453.518 kb on - strand at 3453.518 kb on - strand at 3453.518 kb on - strand at 3453.518 kb on - strand at 3453.525 kb on - strand at 3453.617 kb on - strand, within Pf6N2E2_2962 at 3453.745 kb on + strand, within Pf6N2E2_2962 at 3453.746 kb on - strand, within Pf6N2E2_2962 at 3454.194 kb on + strand at 3454.194 kb on + strand at 3454.194 kb on + strand at 3454.195 kb on - strand at 3454.195 kb on - strand at 3454.195 kb on - strand at 3454.195 kb on - strand at 3454.250 kb on + strand at 3454.250 kb on + strand at 3454.250 kb on + strand at 3454.411 kb on + strand at 3454.614 kb on + strand at 3454.615 kb on - strand at 3454.615 kb on - strand at 3454.671 kb on - strand at 3454.923 kb on - strand, within Pf6N2E2_2963 at 3455.095 kb on + strand, within Pf6N2E2_2963 at 3455.095 kb on + strand, within Pf6N2E2_2963 at 3455.095 kb on + strand, within Pf6N2E2_2963 at 3455.095 kb on + strand, within Pf6N2E2_2963 at 3455.096 kb on - strand, within Pf6N2E2_2963 at 3455.096 kb on - strand, within Pf6N2E2_2963 at 3455.096 kb on - strand, within Pf6N2E2_2963 at 3455.096 kb on - strand, within Pf6N2E2_2963 at 3455.168 kb on - strand, within Pf6N2E2_2963
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 3,452,890 + Pf6N2E2_2961 0.48 -0.2 3,452,890 + Pf6N2E2_2961 0.48 +0.3 3,452,890 + Pf6N2E2_2961 0.48 +0.3 3,452,890 + Pf6N2E2_2961 0.48 -3.2 3,452,891 - Pf6N2E2_2961 0.48 +1.0 3,452,891 - Pf6N2E2_2961 0.48 +0.2 3,452,891 - Pf6N2E2_2961 0.48 +1.0 3,452,891 - Pf6N2E2_2961 0.48 +0.0 3,452,891 - Pf6N2E2_2961 0.48 -0.4 3,452,936 - Pf6N2E2_2961 0.52 +0.1 3,452,936 - Pf6N2E2_2961 0.52 +1.1 3,453,145 + Pf6N2E2_2961 0.71 +0.1 3,453,265 + Pf6N2E2_2961 0.81 -0.3 3,453,265 + Pf6N2E2_2961 0.81 -0.5 3,453,266 - Pf6N2E2_2961 0.81 +1.1 3,453,286 + Pf6N2E2_2961 0.83 -0.4 3,453,286 + Pf6N2E2_2961 0.83 -0.2 3,453,377 - +0.4 3,453,377 - +1.0 3,453,461 + +0.4 3,453,461 + +1.2 3,453,462 - +0.5 3,453,462 - -0.2 3,453,462 - +0.3 3,453,462 - +1.2 3,453,462 - +0.6 3,453,462 - +0.5 3,453,491 + -2.0 3,453,492 - -0.1 3,453,492 - -1.8 3,453,517 + +0.9 3,453,517 + +1.1 3,453,518 - -0.8 3,453,518 - +0.4 3,453,518 - -1.3 3,453,518 - +1.5 3,453,525 - +0.8 3,453,617 - Pf6N2E2_2962 0.17 -0.1 3,453,745 + Pf6N2E2_2962 0.34 -0.6 3,453,746 - Pf6N2E2_2962 0.34 -1.1 3,454,194 + -0.6 3,454,194 + -1.1 3,454,194 + +0.3 3,454,195 - +0.1 3,454,195 - +0.1 3,454,195 - -0.9 3,454,195 - -0.6 3,454,250 + +0.9 3,454,250 + +0.4 3,454,250 + +0.0 3,454,411 + +0.6 3,454,614 + +0.4 3,454,615 - +0.6 3,454,615 - +0.2 3,454,671 - +0.2 3,454,923 - Pf6N2E2_2963 0.18 +3.8 3,455,095 + Pf6N2E2_2963 0.25 -1.6 3,455,095 + Pf6N2E2_2963 0.25 -0.2 3,455,095 + Pf6N2E2_2963 0.25 -0.5 3,455,095 + Pf6N2E2_2963 0.25 -0.3 3,455,096 - Pf6N2E2_2963 0.25 -0.9 3,455,096 - Pf6N2E2_2963 0.25 +0.6 3,455,096 - Pf6N2E2_2963 0.25 -2.0 3,455,096 - Pf6N2E2_2963 0.25 +1.3 3,455,168 - Pf6N2E2_2963 0.28 +0.4
Or see this region's nucleotide sequence