Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2962

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2961 and Pf6N2E2_2962 are separated by 13 nucleotidesPf6N2E2_2962 and Pf6N2E2_2963 are separated by 220 nucleotides Pf6N2E2_2961 - Succinylglutamate desuccinylase/aspartoacylase, at 3,452,356 to 3,453,474 _2961 Pf6N2E2_2962 - ABC transporter for L-Lysine, ATPase component (from data), at 3,453,488 to 3,454,252 _2962 Pf6N2E2_2963 - FIG003033: Helicase domain protein, at 3,454,473 to 3,456,959 _2963 Position (kb) 3453 3454 3455Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3452.890 kb on + strand, within Pf6N2E2_2961at 3452.890 kb on + strand, within Pf6N2E2_2961at 3452.890 kb on + strand, within Pf6N2E2_2961at 3452.890 kb on + strand, within Pf6N2E2_2961at 3452.891 kb on - strand, within Pf6N2E2_2961at 3452.891 kb on - strand, within Pf6N2E2_2961at 3452.891 kb on - strand, within Pf6N2E2_2961at 3452.891 kb on - strand, within Pf6N2E2_2961at 3452.891 kb on - strand, within Pf6N2E2_2961at 3452.936 kb on - strand, within Pf6N2E2_2961at 3452.936 kb on - strand, within Pf6N2E2_2961at 3453.145 kb on + strand, within Pf6N2E2_2961at 3453.265 kb on + strand, within Pf6N2E2_2961at 3453.265 kb on + strand, within Pf6N2E2_2961at 3453.266 kb on - strand, within Pf6N2E2_2961at 3453.286 kb on + strand, within Pf6N2E2_2961at 3453.286 kb on + strand, within Pf6N2E2_2961at 3453.377 kb on - strandat 3453.377 kb on - strandat 3453.461 kb on + strandat 3453.461 kb on + strandat 3453.462 kb on - strandat 3453.462 kb on - strandat 3453.462 kb on - strandat 3453.462 kb on - strandat 3453.462 kb on - strandat 3453.462 kb on - strandat 3453.491 kb on + strandat 3453.492 kb on - strandat 3453.492 kb on - strandat 3453.517 kb on + strandat 3453.517 kb on + strandat 3453.518 kb on - strandat 3453.518 kb on - strandat 3453.518 kb on - strandat 3453.518 kb on - strandat 3453.525 kb on - strandat 3453.617 kb on - strand, within Pf6N2E2_2962at 3453.745 kb on + strand, within Pf6N2E2_2962at 3453.746 kb on - strand, within Pf6N2E2_2962at 3454.194 kb on + strandat 3454.194 kb on + strandat 3454.194 kb on + strandat 3454.195 kb on - strandat 3454.195 kb on - strandat 3454.195 kb on - strandat 3454.195 kb on - strandat 3454.250 kb on + strandat 3454.250 kb on + strandat 3454.250 kb on + strandat 3454.411 kb on + strandat 3454.614 kb on + strandat 3454.615 kb on - strandat 3454.615 kb on - strandat 3454.671 kb on - strandat 3454.923 kb on - strand, within Pf6N2E2_2963at 3455.095 kb on + strand, within Pf6N2E2_2963at 3455.095 kb on + strand, within Pf6N2E2_2963at 3455.095 kb on + strand, within Pf6N2E2_2963at 3455.095 kb on + strand, within Pf6N2E2_2963at 3455.096 kb on - strand, within Pf6N2E2_2963at 3455.096 kb on - strand, within Pf6N2E2_2963at 3455.096 kb on - strand, within Pf6N2E2_2963at 3455.096 kb on - strand, within Pf6N2E2_2963at 3455.168 kb on - strand, within Pf6N2E2_2963

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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3,452,890 + Pf6N2E2_2961 0.48 -0.2
3,452,890 + Pf6N2E2_2961 0.48 +0.3
3,452,890 + Pf6N2E2_2961 0.48 +0.3
3,452,890 + Pf6N2E2_2961 0.48 -3.2
3,452,891 - Pf6N2E2_2961 0.48 +1.0
3,452,891 - Pf6N2E2_2961 0.48 +0.2
3,452,891 - Pf6N2E2_2961 0.48 +1.0
3,452,891 - Pf6N2E2_2961 0.48 +0.0
3,452,891 - Pf6N2E2_2961 0.48 -0.4
3,452,936 - Pf6N2E2_2961 0.52 +0.1
3,452,936 - Pf6N2E2_2961 0.52 +1.1
3,453,145 + Pf6N2E2_2961 0.71 +0.1
3,453,265 + Pf6N2E2_2961 0.81 -0.3
3,453,265 + Pf6N2E2_2961 0.81 -0.5
3,453,266 - Pf6N2E2_2961 0.81 +1.1
3,453,286 + Pf6N2E2_2961 0.83 -0.4
3,453,286 + Pf6N2E2_2961 0.83 -0.2
3,453,377 - +0.4
3,453,377 - +1.0
3,453,461 + +0.4
3,453,461 + +1.2
3,453,462 - +0.5
3,453,462 - -0.2
3,453,462 - +0.3
3,453,462 - +1.2
3,453,462 - +0.6
3,453,462 - +0.5
3,453,491 + -2.0
3,453,492 - -0.1
3,453,492 - -1.8
3,453,517 + +0.9
3,453,517 + +1.1
3,453,518 - -0.8
3,453,518 - +0.4
3,453,518 - -1.3
3,453,518 - +1.5
3,453,525 - +0.8
3,453,617 - Pf6N2E2_2962 0.17 -0.1
3,453,745 + Pf6N2E2_2962 0.34 -0.6
3,453,746 - Pf6N2E2_2962 0.34 -1.1
3,454,194 + -0.6
3,454,194 + -1.1
3,454,194 + +0.3
3,454,195 - +0.1
3,454,195 - +0.1
3,454,195 - -0.9
3,454,195 - -0.6
3,454,250 + +0.9
3,454,250 + +0.4
3,454,250 + +0.0
3,454,411 + +0.6
3,454,614 + +0.4
3,454,615 - +0.6
3,454,615 - +0.2
3,454,671 - +0.2
3,454,923 - Pf6N2E2_2963 0.18 +3.8
3,455,095 + Pf6N2E2_2963 0.25 -1.6
3,455,095 + Pf6N2E2_2963 0.25 -0.2
3,455,095 + Pf6N2E2_2963 0.25 -0.5
3,455,095 + Pf6N2E2_2963 0.25 -0.3
3,455,096 - Pf6N2E2_2963 0.25 -0.9
3,455,096 - Pf6N2E2_2963 0.25 +0.6
3,455,096 - Pf6N2E2_2963 0.25 -2.0
3,455,096 - Pf6N2E2_2963 0.25 +1.3
3,455,168 - Pf6N2E2_2963 0.28 +0.4

Or see this region's nucleotide sequence