Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2937 and Pf6N2E2_2938 are separated by 116 nucleotides Pf6N2E2_2938 and Pf6N2E2_2939 are separated by 403 nucleotides
Pf6N2E2_2937 - Na+/H+ antiporter NhaA type, at 3,428,805 to 3,429,992
_2937
Pf6N2E2_2938 - Outer membrane lipoprotein, at 3,430,109 to 3,430,573
_2938
Pf6N2E2_2939 - Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5), at 3,430,977 to 3,431,624
_2939
Position (kb)
3430
3431 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3429.997 kb on + strand at 3429.997 kb on + strand at 3429.997 kb on + strand at 3429.998 kb on - strand at 3429.998 kb on - strand at 3429.998 kb on - strand at 3430.047 kb on + strand at 3430.047 kb on + strand at 3430.047 kb on + strand at 3430.047 kb on + strand at 3430.047 kb on + strand at 3430.047 kb on + strand at 3430.047 kb on + strand at 3430.047 kb on + strand at 3430.047 kb on + strand at 3430.047 kb on + strand at 3430.047 kb on + strand at 3430.047 kb on + strand at 3430.047 kb on + strand at 3430.048 kb on - strand at 3430.048 kb on - strand at 3430.048 kb on - strand at 3430.048 kb on - strand at 3430.048 kb on - strand at 3430.048 kb on - strand at 3430.079 kb on + strand at 3430.079 kb on + strand at 3430.080 kb on - strand at 3430.080 kb on - strand at 3430.080 kb on - strand at 3430.080 kb on - strand at 3430.080 kb on - strand at 3430.080 kb on - strand at 3430.111 kb on - strand at 3430.111 kb on - strand at 3430.130 kb on - strand at 3430.141 kb on + strand at 3430.142 kb on - strand at 3430.142 kb on - strand at 3430.147 kb on + strand at 3430.148 kb on - strand at 3430.200 kb on + strand, within Pf6N2E2_2938 at 3430.200 kb on + strand, within Pf6N2E2_2938 at 3430.201 kb on - strand, within Pf6N2E2_2938 at 3430.201 kb on - strand, within Pf6N2E2_2938 at 3430.201 kb on - strand, within Pf6N2E2_2938 at 3430.285 kb on + strand, within Pf6N2E2_2938 at 3430.286 kb on - strand, within Pf6N2E2_2938 at 3430.359 kb on - strand, within Pf6N2E2_2938 at 3430.359 kb on - strand, within Pf6N2E2_2938 at 3430.485 kb on + strand, within Pf6N2E2_2938 at 3430.485 kb on + strand, within Pf6N2E2_2938 at 3430.486 kb on - strand, within Pf6N2E2_2938 at 3430.567 kb on + strand at 3430.567 kb on + strand at 3430.567 kb on + strand at 3430.567 kb on + strand at 3430.567 kb on + strand at 3430.568 kb on - strand at 3430.568 kb on - strand at 3430.568 kb on - strand at 3430.568 kb on - strand at 3430.568 kb on - strand at 3430.568 kb on - strand at 3430.573 kb on + strand at 3430.574 kb on - strand at 3430.574 kb on - strand at 3430.574 kb on - strand at 3430.574 kb on - strand at 3430.700 kb on + strand at 3430.752 kb on - strand at 3430.752 kb on - strand at 3430.787 kb on + strand at 3430.787 kb on + strand at 3430.788 kb on - strand at 3430.788 kb on - strand at 3430.788 kb on - strand at 3430.805 kb on + strand at 3430.805 kb on + strand at 3430.805 kb on + strand at 3430.805 kb on + strand at 3430.806 kb on - strand at 3430.880 kb on + strand at 3430.880 kb on + strand at 3430.880 kb on + strand at 3430.880 kb on + strand at 3430.880 kb on + strand at 3430.880 kb on + strand at 3430.880 kb on + strand at 3430.880 kb on + strand at 3430.880 kb on + strand at 3430.881 kb on - strand at 3430.881 kb on - strand at 3430.881 kb on - strand at 3430.881 kb on - strand at 3430.978 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 3,429,997 + -1.2 3,429,997 + -1.6 3,429,997 + -2.3 3,429,998 - -0.9 3,429,998 - -0.8 3,429,998 - -0.0 3,430,047 + +1.0 3,430,047 + -1.8 3,430,047 + -1.1 3,430,047 + -0.8 3,430,047 + -0.8 3,430,047 + +0.8 3,430,047 + -1.9 3,430,047 + -0.5 3,430,047 + +1.7 3,430,047 + -0.9 3,430,047 + +1.2 3,430,047 + +1.0 3,430,047 + +0.6 3,430,048 - +0.2 3,430,048 - -0.3 3,430,048 - +2.0 3,430,048 - +0.6 3,430,048 - +0.5 3,430,048 - -0.2 3,430,079 + +0.3 3,430,079 + -1.4 3,430,080 - +1.4 3,430,080 - -1.9 3,430,080 - -0.4 3,430,080 - +1.1 3,430,080 - +0.8 3,430,080 - +0.6 3,430,111 - -0.4 3,430,111 - +1.8 3,430,130 - +0.4 3,430,141 + -0.1 3,430,142 - -2.0 3,430,142 - -0.7 3,430,147 + -0.7 3,430,148 - -0.5 3,430,200 + Pf6N2E2_2938 0.20 -1.2 3,430,200 + Pf6N2E2_2938 0.20 +0.1 3,430,201 - Pf6N2E2_2938 0.20 -1.6 3,430,201 - Pf6N2E2_2938 0.20 -1.0 3,430,201 - Pf6N2E2_2938 0.20 -2.2 3,430,285 + Pf6N2E2_2938 0.38 -0.3 3,430,286 - Pf6N2E2_2938 0.38 +0.3 3,430,359 - Pf6N2E2_2938 0.54 -1.3 3,430,359 - Pf6N2E2_2938 0.54 +1.2 3,430,485 + Pf6N2E2_2938 0.81 -0.6 3,430,485 + Pf6N2E2_2938 0.81 -0.5 3,430,486 - Pf6N2E2_2938 0.81 +0.2 3,430,567 + +2.2 3,430,567 + +0.0 3,430,567 + -0.7 3,430,567 + -0.5 3,430,567 + -0.8 3,430,568 - -1.6 3,430,568 - -0.1 3,430,568 - -0.6 3,430,568 - -0.0 3,430,568 - +0.1 3,430,568 - -2.2 3,430,573 + +0.6 3,430,574 - -0.6 3,430,574 - -0.1 3,430,574 - -0.1 3,430,574 - +1.6 3,430,700 + +0.0 3,430,752 - +0.6 3,430,752 - +1.8 3,430,787 + -1.3 3,430,787 + -1.9 3,430,788 - -1.0 3,430,788 - -0.0 3,430,788 - +0.1 3,430,805 + -0.9 3,430,805 + -0.6 3,430,805 + -0.5 3,430,805 + +0.3 3,430,806 - +1.2 3,430,880 + -0.0 3,430,880 + -0.4 3,430,880 + -1.4 3,430,880 + +0.5 3,430,880 + -1.4 3,430,880 + +0.5 3,430,880 + -1.6 3,430,880 + -0.3 3,430,880 + -0.4 3,430,881 - +0.7 3,430,881 - +0.1 3,430,881 - -0.4 3,430,881 - +1.6 3,430,978 + +0.4
Or see this region's nucleotide sequence