Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2938

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2937 and Pf6N2E2_2938 are separated by 116 nucleotidesPf6N2E2_2938 and Pf6N2E2_2939 are separated by 403 nucleotides Pf6N2E2_2937 - Na+/H+ antiporter NhaA type, at 3,428,805 to 3,429,992 _2937 Pf6N2E2_2938 - Outer membrane lipoprotein, at 3,430,109 to 3,430,573 _2938 Pf6N2E2_2939 - Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5), at 3,430,977 to 3,431,624 _2939 Position (kb) 3430 3431Strain fitness (log2 ratio) -2 -1 0 1 2at 3429.997 kb on + strandat 3429.997 kb on + strandat 3429.997 kb on + strandat 3429.998 kb on - strandat 3429.998 kb on - strandat 3429.998 kb on - strandat 3430.047 kb on + strandat 3430.047 kb on + strandat 3430.047 kb on + strandat 3430.047 kb on + strandat 3430.047 kb on + strandat 3430.047 kb on + strandat 3430.047 kb on + strandat 3430.047 kb on + strandat 3430.047 kb on + strandat 3430.047 kb on + strandat 3430.047 kb on + strandat 3430.047 kb on + strandat 3430.047 kb on + strandat 3430.048 kb on - strandat 3430.048 kb on - strandat 3430.048 kb on - strandat 3430.048 kb on - strandat 3430.048 kb on - strandat 3430.048 kb on - strandat 3430.079 kb on + strandat 3430.079 kb on + strandat 3430.080 kb on - strandat 3430.080 kb on - strandat 3430.080 kb on - strandat 3430.080 kb on - strandat 3430.080 kb on - strandat 3430.080 kb on - strandat 3430.111 kb on - strandat 3430.111 kb on - strandat 3430.130 kb on - strandat 3430.141 kb on + strandat 3430.142 kb on - strandat 3430.142 kb on - strandat 3430.147 kb on + strandat 3430.148 kb on - strandat 3430.200 kb on + strand, within Pf6N2E2_2938at 3430.200 kb on + strand, within Pf6N2E2_2938at 3430.201 kb on - strand, within Pf6N2E2_2938at 3430.201 kb on - strand, within Pf6N2E2_2938at 3430.201 kb on - strand, within Pf6N2E2_2938at 3430.285 kb on + strand, within Pf6N2E2_2938at 3430.286 kb on - strand, within Pf6N2E2_2938at 3430.359 kb on - strand, within Pf6N2E2_2938at 3430.359 kb on - strand, within Pf6N2E2_2938at 3430.485 kb on + strand, within Pf6N2E2_2938at 3430.485 kb on + strand, within Pf6N2E2_2938at 3430.486 kb on - strand, within Pf6N2E2_2938at 3430.567 kb on + strandat 3430.567 kb on + strandat 3430.567 kb on + strandat 3430.567 kb on + strandat 3430.567 kb on + strandat 3430.568 kb on - strandat 3430.568 kb on - strandat 3430.568 kb on - strandat 3430.568 kb on - strandat 3430.568 kb on - strandat 3430.568 kb on - strandat 3430.573 kb on + strandat 3430.574 kb on - strandat 3430.574 kb on - strandat 3430.574 kb on - strandat 3430.574 kb on - strandat 3430.700 kb on + strandat 3430.752 kb on - strandat 3430.752 kb on - strandat 3430.787 kb on + strandat 3430.787 kb on + strandat 3430.788 kb on - strandat 3430.788 kb on - strandat 3430.788 kb on - strandat 3430.805 kb on + strandat 3430.805 kb on + strandat 3430.805 kb on + strandat 3430.805 kb on + strandat 3430.806 kb on - strandat 3430.880 kb on + strandat 3430.880 kb on + strandat 3430.880 kb on + strandat 3430.880 kb on + strandat 3430.880 kb on + strandat 3430.880 kb on + strandat 3430.880 kb on + strandat 3430.880 kb on + strandat 3430.880 kb on + strandat 3430.881 kb on - strandat 3430.881 kb on - strandat 3430.881 kb on - strandat 3430.881 kb on - strandat 3430.978 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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3,429,997 + -1.2
3,429,997 + -1.6
3,429,997 + -2.3
3,429,998 - -0.9
3,429,998 - -0.8
3,429,998 - -0.0
3,430,047 + +1.0
3,430,047 + -1.8
3,430,047 + -1.1
3,430,047 + -0.8
3,430,047 + -0.8
3,430,047 + +0.8
3,430,047 + -1.9
3,430,047 + -0.5
3,430,047 + +1.7
3,430,047 + -0.9
3,430,047 + +1.2
3,430,047 + +1.0
3,430,047 + +0.6
3,430,048 - +0.2
3,430,048 - -0.3
3,430,048 - +2.0
3,430,048 - +0.6
3,430,048 - +0.5
3,430,048 - -0.2
3,430,079 + +0.3
3,430,079 + -1.4
3,430,080 - +1.4
3,430,080 - -1.9
3,430,080 - -0.4
3,430,080 - +1.1
3,430,080 - +0.8
3,430,080 - +0.6
3,430,111 - -0.4
3,430,111 - +1.8
3,430,130 - +0.4
3,430,141 + -0.1
3,430,142 - -2.0
3,430,142 - -0.7
3,430,147 + -0.7
3,430,148 - -0.5
3,430,200 + Pf6N2E2_2938 0.20 -1.2
3,430,200 + Pf6N2E2_2938 0.20 +0.1
3,430,201 - Pf6N2E2_2938 0.20 -1.6
3,430,201 - Pf6N2E2_2938 0.20 -1.0
3,430,201 - Pf6N2E2_2938 0.20 -2.2
3,430,285 + Pf6N2E2_2938 0.38 -0.3
3,430,286 - Pf6N2E2_2938 0.38 +0.3
3,430,359 - Pf6N2E2_2938 0.54 -1.3
3,430,359 - Pf6N2E2_2938 0.54 +1.2
3,430,485 + Pf6N2E2_2938 0.81 -0.6
3,430,485 + Pf6N2E2_2938 0.81 -0.5
3,430,486 - Pf6N2E2_2938 0.81 +0.2
3,430,567 + +2.2
3,430,567 + +0.0
3,430,567 + -0.7
3,430,567 + -0.5
3,430,567 + -0.8
3,430,568 - -1.6
3,430,568 - -0.1
3,430,568 - -0.6
3,430,568 - -0.0
3,430,568 - +0.1
3,430,568 - -2.2
3,430,573 + +0.6
3,430,574 - -0.6
3,430,574 - -0.1
3,430,574 - -0.1
3,430,574 - +1.6
3,430,700 + +0.0
3,430,752 - +0.6
3,430,752 - +1.8
3,430,787 + -1.3
3,430,787 + -1.9
3,430,788 - -1.0
3,430,788 - -0.0
3,430,788 - +0.1
3,430,805 + -0.9
3,430,805 + -0.6
3,430,805 + -0.5
3,430,805 + +0.3
3,430,806 - +1.2
3,430,880 + -0.0
3,430,880 + -0.4
3,430,880 + -1.4
3,430,880 + +0.5
3,430,880 + -1.4
3,430,880 + +0.5
3,430,880 + -1.6
3,430,880 + -0.3
3,430,880 + -0.4
3,430,881 - +0.7
3,430,881 - +0.1
3,430,881 - -0.4
3,430,881 - +1.6
3,430,978 + +0.4

Or see this region's nucleotide sequence