Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2919

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2918 and Pf6N2E2_2919 are separated by 411 nucleotidesPf6N2E2_2919 and Pf6N2E2_2920 overlap by 4 nucleotidesPf6N2E2_2920 and Pf6N2E2_2921 are separated by 199 nucleotides Pf6N2E2_2918 - hypothetical protein, at 3,412,892 to 3,413,839 _2918 Pf6N2E2_2919 - FIG00955830: hypothetical protein, at 3,414,251 to 3,414,556 _2919 Pf6N2E2_2920 - hypothetical protein, at 3,414,553 to 3,414,696 _2920 Pf6N2E2_2921 - ABC transporter for L-leucine/L-phenylalanine/D-alanine, substrate-binding component LivK (from data), at 3,414,896 to 3,416,023 _2921 Position (kb) 3414 3415Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3414.035 kb on + strandat 3414.040 kb on + strandat 3414.040 kb on + strandat 3414.040 kb on + strandat 3414.040 kb on + strandat 3414.040 kb on + strandat 3414.040 kb on + strandat 3414.040 kb on + strandat 3414.040 kb on + strandat 3414.040 kb on + strandat 3414.141 kb on + strandat 3414.142 kb on - strandat 3414.145 kb on + strandat 3414.146 kb on - strandat 3414.146 kb on - strandat 3414.146 kb on - strandat 3414.146 kb on - strandat 3414.146 kb on - strandat 3414.147 kb on + strandat 3414.147 kb on + strandat 3414.147 kb on + strandat 3414.147 kb on + strandat 3414.147 kb on + strandat 3414.148 kb on - strandat 3414.204 kb on + strandat 3414.204 kb on + strandat 3414.205 kb on - strandat 3414.205 kb on - strandat 3414.205 kb on - strandat 3414.213 kb on + strandat 3414.214 kb on - strandat 3414.214 kb on - strandat 3414.277 kb on + strandat 3414.277 kb on + strandat 3414.277 kb on + strandat 3414.278 kb on - strandat 3414.278 kb on - strandat 3414.278 kb on - strandat 3414.278 kb on - strandat 3414.278 kb on - strandat 3414.395 kb on - strand, within Pf6N2E2_2919at 3414.459 kb on - strand, within Pf6N2E2_2919at 3414.459 kb on - strand, within Pf6N2E2_2919at 3414.531 kb on + strandat 3414.532 kb on - strandat 3414.541 kb on + strandat 3414.541 kb on + strandat 3414.541 kb on + strandat 3414.542 kb on - strandat 3414.542 kb on - strandat 3414.591 kb on + strand, within Pf6N2E2_2920at 3414.716 kb on + strandat 3414.716 kb on + strandat 3414.829 kb on + strandat 3414.829 kb on + strandat 3414.830 kb on - strandat 3414.850 kb on + strandat 3414.864 kb on + strandat 3414.865 kb on - strandat 3414.865 kb on - strandat 3414.865 kb on - strandat 3414.867 kb on - strandat 3414.867 kb on - strandat 3414.874 kb on - strandat 3414.895 kb on + strandat 3414.895 kb on + strandat 3414.895 kb on + strandat 3414.896 kb on - strandat 3414.896 kb on - strandat 3414.896 kb on - strandat 3414.896 kb on - strandat 3414.896 kb on - strandat 3414.901 kb on + strandat 3414.901 kb on + strandat 3414.902 kb on - strandat 3414.902 kb on - strandat 3414.902 kb on - strandat 3414.902 kb on - strandat 3414.902 kb on - strandat 3414.907 kb on + strandat 3414.907 kb on + strandat 3414.908 kb on - strandat 3414.910 kb on + strandat 3414.910 kb on + strandat 3414.910 kb on + strandat 3414.911 kb on - strandat 3414.911 kb on - strandat 3414.911 kb on - strandat 3414.911 kb on - strandat 3414.911 kb on - strandat 3414.911 kb on - strandat 3414.938 kb on - strandat 3415.021 kb on - strand, within Pf6N2E2_2921at 3415.028 kb on + strand, within Pf6N2E2_2921at 3415.122 kb on - strand, within Pf6N2E2_2921at 3415.241 kb on + strand, within Pf6N2E2_2921at 3415.241 kb on + strand, within Pf6N2E2_2921at 3415.241 kb on + strand, within Pf6N2E2_2921at 3415.241 kb on + strand, within Pf6N2E2_2921at 3415.241 kb on + strand, within Pf6N2E2_2921at 3415.241 kb on + strand, within Pf6N2E2_2921at 3415.241 kb on + strand, within Pf6N2E2_2921at 3415.241 kb on + strand, within Pf6N2E2_2921at 3415.241 kb on + strand, within Pf6N2E2_2921at 3415.241 kb on + strand, within Pf6N2E2_2921at 3415.241 kb on + strand, within Pf6N2E2_2921at 3415.241 kb on + strand, within Pf6N2E2_2921at 3415.241 kb on + strand, within Pf6N2E2_2921at 3415.241 kb on + strand, within Pf6N2E2_2921at 3415.241 kb on + strand, within Pf6N2E2_2921at 3415.241 kb on + strand, within Pf6N2E2_2921at 3415.242 kb on - strand, within Pf6N2E2_2921at 3415.242 kb on - strand, within Pf6N2E2_2921at 3415.242 kb on - strand, within Pf6N2E2_2921at 3415.242 kb on - strand, within Pf6N2E2_2921at 3415.242 kb on - strand, within Pf6N2E2_2921at 3415.242 kb on - strand, within Pf6N2E2_2921at 3415.367 kb on + strand, within Pf6N2E2_2921at 3415.367 kb on + strand, within Pf6N2E2_2921at 3415.367 kb on + strand, within Pf6N2E2_2921at 3415.367 kb on + strand, within Pf6N2E2_2921at 3415.367 kb on + strand, within Pf6N2E2_2921at 3415.367 kb on + strand, within Pf6N2E2_2921at 3415.368 kb on - strand, within Pf6N2E2_2921at 3415.368 kb on - strand, within Pf6N2E2_2921at 3415.368 kb on - strand, within Pf6N2E2_2921at 3415.368 kb on - strand, within Pf6N2E2_2921at 3415.368 kb on - strand, within Pf6N2E2_2921at 3415.368 kb on - strand, within Pf6N2E2_2921at 3415.368 kb on - strand, within Pf6N2E2_2921at 3415.368 kb on - strand, within Pf6N2E2_2921at 3415.424 kb on + strand, within Pf6N2E2_2921at 3415.424 kb on + strand, within Pf6N2E2_2921at 3415.425 kb on - strand, within Pf6N2E2_2921

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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3,414,035 + +0.1
3,414,040 + +0.4
3,414,040 + +0.2
3,414,040 + -0.8
3,414,040 + -0.8
3,414,040 + +1.2
3,414,040 + +0.3
3,414,040 + +0.2
3,414,040 + +0.0
3,414,040 + -0.1
3,414,141 + -0.6
3,414,142 - +0.4
3,414,145 + -1.8
3,414,146 - -0.2
3,414,146 - -0.8
3,414,146 - -0.1
3,414,146 - +0.0
3,414,146 - -0.7
3,414,147 + +0.6
3,414,147 + -0.8
3,414,147 + +0.2
3,414,147 + -0.1
3,414,147 + +1.0
3,414,148 - -1.1
3,414,204 + -0.5
3,414,204 + +0.1
3,414,205 - -0.0
3,414,205 - -0.5
3,414,205 - +0.2
3,414,213 + +0.0
3,414,214 - -0.8
3,414,214 - +1.0
3,414,277 + +0.3
3,414,277 + +0.5
3,414,277 + +0.4
3,414,278 - -1.5
3,414,278 - +3.2
3,414,278 - -2.1
3,414,278 - -0.6
3,414,278 - -0.7
3,414,395 - Pf6N2E2_2919 0.47 +0.5
3,414,459 - Pf6N2E2_2919 0.68 -1.7
3,414,459 - Pf6N2E2_2919 0.68 -1.9
3,414,531 + +1.2
3,414,532 - +0.1
3,414,541 + +0.6
3,414,541 + +0.8
3,414,541 + -0.0
3,414,542 - +0.7
3,414,542 - -0.1
3,414,591 + Pf6N2E2_2920 0.26 +0.9
3,414,716 + -0.6
3,414,716 + +1.3
3,414,829 + +0.6
3,414,829 + +0.8
3,414,830 - -0.8
3,414,850 + +0.7
3,414,864 + +0.6
3,414,865 - -1.1
3,414,865 - -0.1
3,414,865 - -2.5
3,414,867 - +0.1
3,414,867 - +0.1
3,414,874 - -1.2
3,414,895 + +0.7
3,414,895 + +0.1
3,414,895 + +0.6
3,414,896 - -0.1
3,414,896 - -0.7
3,414,896 - +0.4
3,414,896 - -0.2
3,414,896 - +0.9
3,414,901 + -1.0
3,414,901 + -0.1
3,414,902 - -0.0
3,414,902 - +0.9
3,414,902 - -0.0
3,414,902 - +1.6
3,414,902 - +0.7
3,414,907 + +1.6
3,414,907 + +0.2
3,414,908 - +0.6
3,414,910 + -0.2
3,414,910 + -2.1
3,414,910 + +0.1
3,414,911 - +0.6
3,414,911 - +0.5
3,414,911 - -0.8
3,414,911 - -0.9
3,414,911 - -1.5
3,414,911 - -0.4
3,414,938 - +1.2
3,415,021 - Pf6N2E2_2921 0.11 -0.0
3,415,028 + Pf6N2E2_2921 0.12 -0.1
3,415,122 - Pf6N2E2_2921 0.20 -1.3
3,415,241 + Pf6N2E2_2921 0.31 +0.8
3,415,241 + Pf6N2E2_2921 0.31 -0.0
3,415,241 + Pf6N2E2_2921 0.31 -2.7
3,415,241 + Pf6N2E2_2921 0.31 +0.6
3,415,241 + Pf6N2E2_2921 0.31 +0.5
3,415,241 + Pf6N2E2_2921 0.31 -0.7
3,415,241 + Pf6N2E2_2921 0.31 -1.6
3,415,241 + Pf6N2E2_2921 0.31 -2.1
3,415,241 + Pf6N2E2_2921 0.31 +1.4
3,415,241 + Pf6N2E2_2921 0.31 +0.5
3,415,241 + Pf6N2E2_2921 0.31 -0.6
3,415,241 + Pf6N2E2_2921 0.31 +0.3
3,415,241 + Pf6N2E2_2921 0.31 -0.5
3,415,241 + Pf6N2E2_2921 0.31 +0.4
3,415,241 + Pf6N2E2_2921 0.31 +0.3
3,415,241 + Pf6N2E2_2921 0.31 +0.4
3,415,242 - Pf6N2E2_2921 0.31 +0.2
3,415,242 - Pf6N2E2_2921 0.31 -0.1
3,415,242 - Pf6N2E2_2921 0.31 -1.1
3,415,242 - Pf6N2E2_2921 0.31 +1.1
3,415,242 - Pf6N2E2_2921 0.31 -0.5
3,415,242 - Pf6N2E2_2921 0.31 +1.2
3,415,367 + Pf6N2E2_2921 0.42 +0.7
3,415,367 + Pf6N2E2_2921 0.42 +0.6
3,415,367 + Pf6N2E2_2921 0.42 +1.7
3,415,367 + Pf6N2E2_2921 0.42 +0.0
3,415,367 + Pf6N2E2_2921 0.42 +0.3
3,415,367 + Pf6N2E2_2921 0.42 +0.3
3,415,368 - Pf6N2E2_2921 0.42 +0.9
3,415,368 - Pf6N2E2_2921 0.42 -1.0
3,415,368 - Pf6N2E2_2921 0.42 -0.3
3,415,368 - Pf6N2E2_2921 0.42 +0.4
3,415,368 - Pf6N2E2_2921 0.42 -0.7
3,415,368 - Pf6N2E2_2921 0.42 -0.5
3,415,368 - Pf6N2E2_2921 0.42 +0.4
3,415,368 - Pf6N2E2_2921 0.42 -0.8
3,415,424 + Pf6N2E2_2921 0.47 -0.0
3,415,424 + Pf6N2E2_2921 0.47 +2.5
3,415,425 - Pf6N2E2_2921 0.47 +0.7

Or see this region's nucleotide sequence