Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2918 and Pf6N2E2_2919 are separated by 411 nucleotides Pf6N2E2_2919 and Pf6N2E2_2920 overlap by 4 nucleotides Pf6N2E2_2920 and Pf6N2E2_2921 are separated by 199 nucleotides
Pf6N2E2_2918 - hypothetical protein, at 3,412,892 to 3,413,839
_2918
Pf6N2E2_2919 - FIG00955830: hypothetical protein, at 3,414,251 to 3,414,556
_2919
Pf6N2E2_2920 - hypothetical protein, at 3,414,553 to 3,414,696
_2920
Pf6N2E2_2921 - ABC transporter for L-leucine/L-phenylalanine/D-alanine, substrate-binding component LivK (from data) , at 3,414,896 to 3,416,023
_2921
Position (kb)
3414
3415 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3414.035 kb on + strand at 3414.040 kb on + strand at 3414.040 kb on + strand at 3414.040 kb on + strand at 3414.040 kb on + strand at 3414.040 kb on + strand at 3414.040 kb on + strand at 3414.040 kb on + strand at 3414.040 kb on + strand at 3414.040 kb on + strand at 3414.141 kb on + strand at 3414.142 kb on - strand at 3414.145 kb on + strand at 3414.146 kb on - strand at 3414.146 kb on - strand at 3414.146 kb on - strand at 3414.146 kb on - strand at 3414.146 kb on - strand at 3414.147 kb on + strand at 3414.147 kb on + strand at 3414.147 kb on + strand at 3414.147 kb on + strand at 3414.147 kb on + strand at 3414.148 kb on - strand at 3414.204 kb on + strand at 3414.204 kb on + strand at 3414.205 kb on - strand at 3414.205 kb on - strand at 3414.205 kb on - strand at 3414.213 kb on + strand at 3414.214 kb on - strand at 3414.214 kb on - strand at 3414.277 kb on + strand at 3414.277 kb on + strand at 3414.277 kb on + strand at 3414.278 kb on - strand at 3414.278 kb on - strand at 3414.278 kb on - strand at 3414.278 kb on - strand at 3414.278 kb on - strand at 3414.395 kb on - strand, within Pf6N2E2_2919 at 3414.459 kb on - strand, within Pf6N2E2_2919 at 3414.459 kb on - strand, within Pf6N2E2_2919 at 3414.531 kb on + strand at 3414.532 kb on - strand at 3414.541 kb on + strand at 3414.541 kb on + strand at 3414.541 kb on + strand at 3414.542 kb on - strand at 3414.542 kb on - strand at 3414.591 kb on + strand, within Pf6N2E2_2920 at 3414.716 kb on + strand at 3414.716 kb on + strand at 3414.829 kb on + strand at 3414.829 kb on + strand at 3414.830 kb on - strand at 3414.850 kb on + strand at 3414.864 kb on + strand at 3414.865 kb on - strand at 3414.865 kb on - strand at 3414.865 kb on - strand at 3414.867 kb on - strand at 3414.867 kb on - strand at 3414.874 kb on - strand at 3414.895 kb on + strand at 3414.895 kb on + strand at 3414.895 kb on + strand at 3414.896 kb on - strand at 3414.896 kb on - strand at 3414.896 kb on - strand at 3414.896 kb on - strand at 3414.896 kb on - strand at 3414.901 kb on + strand at 3414.901 kb on + strand at 3414.902 kb on - strand at 3414.902 kb on - strand at 3414.902 kb on - strand at 3414.902 kb on - strand at 3414.902 kb on - strand at 3414.907 kb on + strand at 3414.907 kb on + strand at 3414.908 kb on - strand at 3414.910 kb on + strand at 3414.910 kb on + strand at 3414.910 kb on + strand at 3414.911 kb on - strand at 3414.911 kb on - strand at 3414.911 kb on - strand at 3414.911 kb on - strand at 3414.911 kb on - strand at 3414.911 kb on - strand at 3414.938 kb on - strand at 3415.021 kb on - strand, within Pf6N2E2_2921 at 3415.028 kb on + strand, within Pf6N2E2_2921 at 3415.122 kb on - strand, within Pf6N2E2_2921 at 3415.241 kb on + strand, within Pf6N2E2_2921 at 3415.241 kb on + strand, within Pf6N2E2_2921 at 3415.241 kb on + strand, within Pf6N2E2_2921 at 3415.241 kb on + strand, within Pf6N2E2_2921 at 3415.241 kb on + strand, within Pf6N2E2_2921 at 3415.241 kb on + strand, within Pf6N2E2_2921 at 3415.241 kb on + strand, within Pf6N2E2_2921 at 3415.241 kb on + strand, within Pf6N2E2_2921 at 3415.241 kb on + strand, within Pf6N2E2_2921 at 3415.241 kb on + strand, within Pf6N2E2_2921 at 3415.241 kb on + strand, within Pf6N2E2_2921 at 3415.241 kb on + strand, within Pf6N2E2_2921 at 3415.241 kb on + strand, within Pf6N2E2_2921 at 3415.241 kb on + strand, within Pf6N2E2_2921 at 3415.241 kb on + strand, within Pf6N2E2_2921 at 3415.241 kb on + strand, within Pf6N2E2_2921 at 3415.242 kb on - strand, within Pf6N2E2_2921 at 3415.242 kb on - strand, within Pf6N2E2_2921 at 3415.242 kb on - strand, within Pf6N2E2_2921 at 3415.242 kb on - strand, within Pf6N2E2_2921 at 3415.242 kb on - strand, within Pf6N2E2_2921 at 3415.242 kb on - strand, within Pf6N2E2_2921 at 3415.367 kb on + strand, within Pf6N2E2_2921 at 3415.367 kb on + strand, within Pf6N2E2_2921 at 3415.367 kb on + strand, within Pf6N2E2_2921 at 3415.367 kb on + strand, within Pf6N2E2_2921 at 3415.367 kb on + strand, within Pf6N2E2_2921 at 3415.367 kb on + strand, within Pf6N2E2_2921 at 3415.368 kb on - strand, within Pf6N2E2_2921 at 3415.368 kb on - strand, within Pf6N2E2_2921 at 3415.368 kb on - strand, within Pf6N2E2_2921 at 3415.368 kb on - strand, within Pf6N2E2_2921 at 3415.368 kb on - strand, within Pf6N2E2_2921 at 3415.368 kb on - strand, within Pf6N2E2_2921 at 3415.368 kb on - strand, within Pf6N2E2_2921 at 3415.368 kb on - strand, within Pf6N2E2_2921 at 3415.424 kb on + strand, within Pf6N2E2_2921 at 3415.424 kb on + strand, within Pf6N2E2_2921 at 3415.425 kb on - strand, within Pf6N2E2_2921
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 3,414,035 + +0.1 3,414,040 + +0.4 3,414,040 + +0.2 3,414,040 + -0.8 3,414,040 + -0.8 3,414,040 + +1.2 3,414,040 + +0.3 3,414,040 + +0.2 3,414,040 + +0.0 3,414,040 + -0.1 3,414,141 + -0.6 3,414,142 - +0.4 3,414,145 + -1.8 3,414,146 - -0.2 3,414,146 - -0.8 3,414,146 - -0.1 3,414,146 - +0.0 3,414,146 - -0.7 3,414,147 + +0.6 3,414,147 + -0.8 3,414,147 + +0.2 3,414,147 + -0.1 3,414,147 + +1.0 3,414,148 - -1.1 3,414,204 + -0.5 3,414,204 + +0.1 3,414,205 - -0.0 3,414,205 - -0.5 3,414,205 - +0.2 3,414,213 + +0.0 3,414,214 - -0.8 3,414,214 - +1.0 3,414,277 + +0.3 3,414,277 + +0.5 3,414,277 + +0.4 3,414,278 - -1.5 3,414,278 - +3.2 3,414,278 - -2.1 3,414,278 - -0.6 3,414,278 - -0.7 3,414,395 - Pf6N2E2_2919 0.47 +0.5 3,414,459 - Pf6N2E2_2919 0.68 -1.7 3,414,459 - Pf6N2E2_2919 0.68 -1.9 3,414,531 + +1.2 3,414,532 - +0.1 3,414,541 + +0.6 3,414,541 + +0.8 3,414,541 + -0.0 3,414,542 - +0.7 3,414,542 - -0.1 3,414,591 + Pf6N2E2_2920 0.26 +0.9 3,414,716 + -0.6 3,414,716 + +1.3 3,414,829 + +0.6 3,414,829 + +0.8 3,414,830 - -0.8 3,414,850 + +0.7 3,414,864 + +0.6 3,414,865 - -1.1 3,414,865 - -0.1 3,414,865 - -2.5 3,414,867 - +0.1 3,414,867 - +0.1 3,414,874 - -1.2 3,414,895 + +0.7 3,414,895 + +0.1 3,414,895 + +0.6 3,414,896 - -0.1 3,414,896 - -0.7 3,414,896 - +0.4 3,414,896 - -0.2 3,414,896 - +0.9 3,414,901 + -1.0 3,414,901 + -0.1 3,414,902 - -0.0 3,414,902 - +0.9 3,414,902 - -0.0 3,414,902 - +1.6 3,414,902 - +0.7 3,414,907 + +1.6 3,414,907 + +0.2 3,414,908 - +0.6 3,414,910 + -0.2 3,414,910 + -2.1 3,414,910 + +0.1 3,414,911 - +0.6 3,414,911 - +0.5 3,414,911 - -0.8 3,414,911 - -0.9 3,414,911 - -1.5 3,414,911 - -0.4 3,414,938 - +1.2 3,415,021 - Pf6N2E2_2921 0.11 -0.0 3,415,028 + Pf6N2E2_2921 0.12 -0.1 3,415,122 - Pf6N2E2_2921 0.20 -1.3 3,415,241 + Pf6N2E2_2921 0.31 +0.8 3,415,241 + Pf6N2E2_2921 0.31 -0.0 3,415,241 + Pf6N2E2_2921 0.31 -2.7 3,415,241 + Pf6N2E2_2921 0.31 +0.6 3,415,241 + Pf6N2E2_2921 0.31 +0.5 3,415,241 + Pf6N2E2_2921 0.31 -0.7 3,415,241 + Pf6N2E2_2921 0.31 -1.6 3,415,241 + Pf6N2E2_2921 0.31 -2.1 3,415,241 + Pf6N2E2_2921 0.31 +1.4 3,415,241 + Pf6N2E2_2921 0.31 +0.5 3,415,241 + Pf6N2E2_2921 0.31 -0.6 3,415,241 + Pf6N2E2_2921 0.31 +0.3 3,415,241 + Pf6N2E2_2921 0.31 -0.5 3,415,241 + Pf6N2E2_2921 0.31 +0.4 3,415,241 + Pf6N2E2_2921 0.31 +0.3 3,415,241 + Pf6N2E2_2921 0.31 +0.4 3,415,242 - Pf6N2E2_2921 0.31 +0.2 3,415,242 - Pf6N2E2_2921 0.31 -0.1 3,415,242 - Pf6N2E2_2921 0.31 -1.1 3,415,242 - Pf6N2E2_2921 0.31 +1.1 3,415,242 - Pf6N2E2_2921 0.31 -0.5 3,415,242 - Pf6N2E2_2921 0.31 +1.2 3,415,367 + Pf6N2E2_2921 0.42 +0.7 3,415,367 + Pf6N2E2_2921 0.42 +0.6 3,415,367 + Pf6N2E2_2921 0.42 +1.7 3,415,367 + Pf6N2E2_2921 0.42 +0.0 3,415,367 + Pf6N2E2_2921 0.42 +0.3 3,415,367 + Pf6N2E2_2921 0.42 +0.3 3,415,368 - Pf6N2E2_2921 0.42 +0.9 3,415,368 - Pf6N2E2_2921 0.42 -1.0 3,415,368 - Pf6N2E2_2921 0.42 -0.3 3,415,368 - Pf6N2E2_2921 0.42 +0.4 3,415,368 - Pf6N2E2_2921 0.42 -0.7 3,415,368 - Pf6N2E2_2921 0.42 -0.5 3,415,368 - Pf6N2E2_2921 0.42 +0.4 3,415,368 - Pf6N2E2_2921 0.42 -0.8 3,415,424 + Pf6N2E2_2921 0.47 -0.0 3,415,424 + Pf6N2E2_2921 0.47 +2.5 3,415,425 - Pf6N2E2_2921 0.47 +0.7
Or see this region's nucleotide sequence