Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2825 and Pf6N2E2_2826 are separated by 442 nucleotides Pf6N2E2_2826 and Pf6N2E2_2827 are separated by 252 nucleotides Pf6N2E2_2827 and Pf6N2E2_2828 are separated by 462 nucleotides
Pf6N2E2_2825 - RND efflux system, outer membrane lipoprotein CmeC, at 3,313,849 to 3,315,306
_2825
Pf6N2E2_2826 - hypothetical protein, at 3,315,749 to 3,316,039
_2826
Pf6N2E2_2827 - hypothetical protein, at 3,316,292 to 3,316,642
_2827
Pf6N2E2_2828 - PhaK-like protein, at 3,317,105 to 3,318,358
_2828
Position (kb)
3316
3317 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3315.307 kb on + strand at 3315.307 kb on + strand at 3315.307 kb on + strand at 3315.307 kb on + strand at 3315.307 kb on + strand at 3315.307 kb on + strand at 3315.307 kb on + strand at 3315.307 kb on + strand at 3315.308 kb on - strand at 3315.308 kb on - strand at 3315.308 kb on - strand at 3315.308 kb on - strand at 3315.308 kb on - strand at 3315.360 kb on + strand at 3315.361 kb on - strand at 3315.452 kb on - strand at 3315.543 kb on - strand at 3315.543 kb on - strand at 3315.543 kb on - strand at 3315.543 kb on - strand at 3315.543 kb on - strand at 3315.543 kb on - strand at 3315.543 kb on - strand at 3315.543 kb on - strand at 3315.545 kb on - strand at 3315.718 kb on + strand at 3315.719 kb on - strand at 3315.719 kb on - strand at 3315.719 kb on - strand at 3315.719 kb on - strand at 3315.723 kb on - strand at 3315.723 kb on - strand at 3316.157 kb on + strand at 3316.157 kb on + strand at 3316.157 kb on + strand at 3316.208 kb on + strand at 3316.278 kb on + strand at 3316.278 kb on + strand at 3316.278 kb on + strand at 3316.279 kb on - strand at 3316.279 kb on - strand at 3316.279 kb on - strand at 3316.597 kb on - strand, within Pf6N2E2_2827 at 3316.597 kb on - strand, within Pf6N2E2_2827 at 3316.756 kb on - strand at 3317.015 kb on + strand at 3317.234 kb on + strand, within Pf6N2E2_2828 at 3317.234 kb on + strand, within Pf6N2E2_2828 at 3317.235 kb on - strand, within Pf6N2E2_2828 at 3317.359 kb on - strand, within Pf6N2E2_2828 at 3317.359 kb on - strand, within Pf6N2E2_2828 at 3317.359 kb on - strand, within Pf6N2E2_2828 at 3317.359 kb on - strand, within Pf6N2E2_2828 at 3317.359 kb on - strand, within Pf6N2E2_2828 at 3317.369 kb on + strand, within Pf6N2E2_2828 at 3317.369 kb on + strand, within Pf6N2E2_2828 at 3317.369 kb on + strand, within Pf6N2E2_2828 at 3317.370 kb on - strand, within Pf6N2E2_2828 at 3317.408 kb on - strand, within Pf6N2E2_2828 at 3317.621 kb on + strand, within Pf6N2E2_2828 at 3317.621 kb on + strand, within Pf6N2E2_2828 at 3317.622 kb on - strand, within Pf6N2E2_2828 at 3317.622 kb on - strand, within Pf6N2E2_2828 at 3317.622 kb on - strand, within Pf6N2E2_2828
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 3,315,307 + -0.2 3,315,307 + -1.7 3,315,307 + +0.6 3,315,307 + +0.4 3,315,307 + +0.1 3,315,307 + +0.4 3,315,307 + -1.1 3,315,307 + -0.7 3,315,308 - +1.4 3,315,308 - -2.6 3,315,308 - -0.7 3,315,308 - -1.4 3,315,308 - -0.1 3,315,360 + +0.8 3,315,361 - -1.3 3,315,452 - -0.1 3,315,543 - -0.9 3,315,543 - +0.8 3,315,543 - +0.8 3,315,543 - -0.5 3,315,543 - +0.0 3,315,543 - +0.7 3,315,543 - +0.4 3,315,543 - +1.6 3,315,545 - -0.5 3,315,718 + -0.2 3,315,719 - +0.8 3,315,719 - +0.2 3,315,719 - +1.2 3,315,719 - -0.4 3,315,723 - +2.0 3,315,723 - -0.5 3,316,157 + +0.5 3,316,157 + +0.3 3,316,157 + -1.2 3,316,208 + -0.2 3,316,278 + -0.3 3,316,278 + -0.2 3,316,278 + -0.7 3,316,279 - -1.2 3,316,279 - +1.5 3,316,279 - -0.3 3,316,597 - Pf6N2E2_2827 0.87 -0.8 3,316,597 - Pf6N2E2_2827 0.87 -0.0 3,316,756 - +0.2 3,317,015 + +0.4 3,317,234 + Pf6N2E2_2828 0.10 -0.3 3,317,234 + Pf6N2E2_2828 0.10 -0.2 3,317,235 - Pf6N2E2_2828 0.10 -0.2 3,317,359 - Pf6N2E2_2828 0.20 +0.3 3,317,359 - Pf6N2E2_2828 0.20 +0.8 3,317,359 - Pf6N2E2_2828 0.20 +0.5 3,317,359 - Pf6N2E2_2828 0.20 +0.4 3,317,359 - Pf6N2E2_2828 0.20 -1.0 3,317,369 + Pf6N2E2_2828 0.21 +0.1 3,317,369 + Pf6N2E2_2828 0.21 +0.4 3,317,369 + Pf6N2E2_2828 0.21 -0.0 3,317,370 - Pf6N2E2_2828 0.21 -0.2 3,317,408 - Pf6N2E2_2828 0.24 +0.4 3,317,621 + Pf6N2E2_2828 0.41 +0.4 3,317,621 + Pf6N2E2_2828 0.41 -0.0 3,317,622 - Pf6N2E2_2828 0.41 -0.0 3,317,622 - Pf6N2E2_2828 0.41 -1.2 3,317,622 - Pf6N2E2_2828 0.41 +0.3
Or see this region's nucleotide sequence