Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2827

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2825 and Pf6N2E2_2826 are separated by 442 nucleotidesPf6N2E2_2826 and Pf6N2E2_2827 are separated by 252 nucleotidesPf6N2E2_2827 and Pf6N2E2_2828 are separated by 462 nucleotides Pf6N2E2_2825 - RND efflux system, outer membrane lipoprotein CmeC, at 3,313,849 to 3,315,306 _2825 Pf6N2E2_2826 - hypothetical protein, at 3,315,749 to 3,316,039 _2826 Pf6N2E2_2827 - hypothetical protein, at 3,316,292 to 3,316,642 _2827 Pf6N2E2_2828 - PhaK-like protein, at 3,317,105 to 3,318,358 _2828 Position (kb) 3316 3317Strain fitness (log2 ratio) -2 -1 0 1 2at 3315.307 kb on + strandat 3315.307 kb on + strandat 3315.307 kb on + strandat 3315.307 kb on + strandat 3315.307 kb on + strandat 3315.307 kb on + strandat 3315.307 kb on + strandat 3315.307 kb on + strandat 3315.308 kb on - strandat 3315.308 kb on - strandat 3315.308 kb on - strandat 3315.308 kb on - strandat 3315.308 kb on - strandat 3315.360 kb on + strandat 3315.361 kb on - strandat 3315.452 kb on - strandat 3315.543 kb on - strandat 3315.543 kb on - strandat 3315.543 kb on - strandat 3315.543 kb on - strandat 3315.543 kb on - strandat 3315.543 kb on - strandat 3315.543 kb on - strandat 3315.543 kb on - strandat 3315.545 kb on - strandat 3315.718 kb on + strandat 3315.719 kb on - strandat 3315.719 kb on - strandat 3315.719 kb on - strandat 3315.719 kb on - strandat 3315.723 kb on - strandat 3315.723 kb on - strandat 3316.157 kb on + strandat 3316.157 kb on + strandat 3316.157 kb on + strandat 3316.208 kb on + strandat 3316.278 kb on + strandat 3316.278 kb on + strandat 3316.278 kb on + strandat 3316.279 kb on - strandat 3316.279 kb on - strandat 3316.279 kb on - strandat 3316.597 kb on - strand, within Pf6N2E2_2827at 3316.597 kb on - strand, within Pf6N2E2_2827at 3316.756 kb on - strandat 3317.015 kb on + strandat 3317.234 kb on + strand, within Pf6N2E2_2828at 3317.234 kb on + strand, within Pf6N2E2_2828at 3317.235 kb on - strand, within Pf6N2E2_2828at 3317.359 kb on - strand, within Pf6N2E2_2828at 3317.359 kb on - strand, within Pf6N2E2_2828at 3317.359 kb on - strand, within Pf6N2E2_2828at 3317.359 kb on - strand, within Pf6N2E2_2828at 3317.359 kb on - strand, within Pf6N2E2_2828at 3317.369 kb on + strand, within Pf6N2E2_2828at 3317.369 kb on + strand, within Pf6N2E2_2828at 3317.369 kb on + strand, within Pf6N2E2_2828at 3317.370 kb on - strand, within Pf6N2E2_2828at 3317.408 kb on - strand, within Pf6N2E2_2828at 3317.621 kb on + strand, within Pf6N2E2_2828at 3317.621 kb on + strand, within Pf6N2E2_2828at 3317.622 kb on - strand, within Pf6N2E2_2828at 3317.622 kb on - strand, within Pf6N2E2_2828at 3317.622 kb on - strand, within Pf6N2E2_2828

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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3,315,307 + -0.2
3,315,307 + -1.7
3,315,307 + +0.6
3,315,307 + +0.4
3,315,307 + +0.1
3,315,307 + +0.4
3,315,307 + -1.1
3,315,307 + -0.7
3,315,308 - +1.4
3,315,308 - -2.6
3,315,308 - -0.7
3,315,308 - -1.4
3,315,308 - -0.1
3,315,360 + +0.8
3,315,361 - -1.3
3,315,452 - -0.1
3,315,543 - -0.9
3,315,543 - +0.8
3,315,543 - +0.8
3,315,543 - -0.5
3,315,543 - +0.0
3,315,543 - +0.7
3,315,543 - +0.4
3,315,543 - +1.6
3,315,545 - -0.5
3,315,718 + -0.2
3,315,719 - +0.8
3,315,719 - +0.2
3,315,719 - +1.2
3,315,719 - -0.4
3,315,723 - +2.0
3,315,723 - -0.5
3,316,157 + +0.5
3,316,157 + +0.3
3,316,157 + -1.2
3,316,208 + -0.2
3,316,278 + -0.3
3,316,278 + -0.2
3,316,278 + -0.7
3,316,279 - -1.2
3,316,279 - +1.5
3,316,279 - -0.3
3,316,597 - Pf6N2E2_2827 0.87 -0.8
3,316,597 - Pf6N2E2_2827 0.87 -0.0
3,316,756 - +0.2
3,317,015 + +0.4
3,317,234 + Pf6N2E2_2828 0.10 -0.3
3,317,234 + Pf6N2E2_2828 0.10 -0.2
3,317,235 - Pf6N2E2_2828 0.10 -0.2
3,317,359 - Pf6N2E2_2828 0.20 +0.3
3,317,359 - Pf6N2E2_2828 0.20 +0.8
3,317,359 - Pf6N2E2_2828 0.20 +0.5
3,317,359 - Pf6N2E2_2828 0.20 +0.4
3,317,359 - Pf6N2E2_2828 0.20 -1.0
3,317,369 + Pf6N2E2_2828 0.21 +0.1
3,317,369 + Pf6N2E2_2828 0.21 +0.4
3,317,369 + Pf6N2E2_2828 0.21 -0.0
3,317,370 - Pf6N2E2_2828 0.21 -0.2
3,317,408 - Pf6N2E2_2828 0.24 +0.4
3,317,621 + Pf6N2E2_2828 0.41 +0.4
3,317,621 + Pf6N2E2_2828 0.41 -0.0
3,317,622 - Pf6N2E2_2828 0.41 -0.0
3,317,622 - Pf6N2E2_2828 0.41 -1.2
3,317,622 - Pf6N2E2_2828 0.41 +0.3

Or see this region's nucleotide sequence