Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2753

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2752 and Pf6N2E2_2753 are separated by 63 nucleotidesPf6N2E2_2753 and Pf6N2E2_2754 are separated by 234 nucleotides Pf6N2E2_2752 - Exported zinc metalloprotease YfgC precursor, at 3,243,493 to 3,244,926 _2752 Pf6N2E2_2753 - HtrA protease/chaperone protein, at 3,244,990 to 3,246,420 _2753 Pf6N2E2_2754 - Sigma factor RpoE negative regulatory protein RseB precursor, at 3,246,655 to 3,247,602 _2754 Position (kb) 3244 3245 3246 3247Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8at 3244.117 kb on + strand, within Pf6N2E2_2752at 3244.321 kb on + strand, within Pf6N2E2_2752at 3244.321 kb on + strand, within Pf6N2E2_2752at 3244.321 kb on + strand, within Pf6N2E2_2752at 3244.322 kb on - strand, within Pf6N2E2_2752at 3244.322 kb on - strand, within Pf6N2E2_2752at 3244.399 kb on + strand, within Pf6N2E2_2752at 3244.495 kb on + strand, within Pf6N2E2_2752at 3244.495 kb on + strand, within Pf6N2E2_2752at 3244.495 kb on + strand, within Pf6N2E2_2752at 3244.495 kb on + strand, within Pf6N2E2_2752at 3244.495 kb on + strand, within Pf6N2E2_2752at 3244.495 kb on + strand, within Pf6N2E2_2752at 3244.495 kb on + strand, within Pf6N2E2_2752at 3244.496 kb on - strand, within Pf6N2E2_2752at 3244.496 kb on - strand, within Pf6N2E2_2752at 3244.496 kb on - strand, within Pf6N2E2_2752at 3244.496 kb on - strand, within Pf6N2E2_2752at 3244.496 kb on - strand, within Pf6N2E2_2752at 3244.496 kb on - strand, within Pf6N2E2_2752at 3244.496 kb on - strand, within Pf6N2E2_2752at 3244.496 kb on - strand, within Pf6N2E2_2752at 3244.496 kb on - strand, within Pf6N2E2_2752at 3244.496 kb on - strand, within Pf6N2E2_2752at 3244.496 kb on - strand, within Pf6N2E2_2752at 3244.579 kb on + strand, within Pf6N2E2_2752at 3244.592 kb on - strand, within Pf6N2E2_2752at 3244.705 kb on + strand, within Pf6N2E2_2752at 3244.705 kb on + strand, within Pf6N2E2_2752at 3244.705 kb on + strand, within Pf6N2E2_2752at 3244.771 kb on + strand, within Pf6N2E2_2752at 3244.943 kb on - strandat 3244.943 kb on - strandat 3245.130 kb on + strandat 3245.131 kb on - strandat 3245.131 kb on - strandat 3245.410 kb on + strand, within Pf6N2E2_2753at 3245.410 kb on + strand, within Pf6N2E2_2753at 3245.410 kb on + strand, within Pf6N2E2_2753at 3245.709 kb on - strand, within Pf6N2E2_2753at 3245.811 kb on - strand, within Pf6N2E2_2753at 3246.044 kb on - strand, within Pf6N2E2_2753at 3246.093 kb on - strand, within Pf6N2E2_2753at 3246.109 kb on - strand, within Pf6N2E2_2753at 3246.538 kb on - strandat 3246.873 kb on - strand, within Pf6N2E2_2754at 3246.873 kb on - strand, within Pf6N2E2_2754at 3247.303 kb on - strand, within Pf6N2E2_2754at 3247.344 kb on + strand, within Pf6N2E2_2754at 3247.344 kb on + strand, within Pf6N2E2_2754

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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3,244,117 + Pf6N2E2_2752 0.44 +1.1
3,244,321 + Pf6N2E2_2752 0.58 -2.2
3,244,321 + Pf6N2E2_2752 0.58 -0.3
3,244,321 + Pf6N2E2_2752 0.58 -1.2
3,244,322 - Pf6N2E2_2752 0.58 -0.7
3,244,322 - Pf6N2E2_2752 0.58 -2.6
3,244,399 + Pf6N2E2_2752 0.63 -2.5
3,244,495 + Pf6N2E2_2752 0.70 -0.8
3,244,495 + Pf6N2E2_2752 0.70 -1.9
3,244,495 + Pf6N2E2_2752 0.70 -2.3
3,244,495 + Pf6N2E2_2752 0.70 -2.1
3,244,495 + Pf6N2E2_2752 0.70 -1.4
3,244,495 + Pf6N2E2_2752 0.70 -1.1
3,244,495 + Pf6N2E2_2752 0.70 -2.6
3,244,496 - Pf6N2E2_2752 0.70 -1.9
3,244,496 - Pf6N2E2_2752 0.70 -0.2
3,244,496 - Pf6N2E2_2752 0.70 -0.8
3,244,496 - Pf6N2E2_2752 0.70 -2.8
3,244,496 - Pf6N2E2_2752 0.70 -1.5
3,244,496 - Pf6N2E2_2752 0.70 +0.2
3,244,496 - Pf6N2E2_2752 0.70 -0.0
3,244,496 - Pf6N2E2_2752 0.70 -0.5
3,244,496 - Pf6N2E2_2752 0.70 -1.1
3,244,496 - Pf6N2E2_2752 0.70 -0.9
3,244,496 - Pf6N2E2_2752 0.70 -1.0
3,244,579 + Pf6N2E2_2752 0.76 -1.9
3,244,592 - Pf6N2E2_2752 0.77 +2.1
3,244,705 + Pf6N2E2_2752 0.85 -0.9
3,244,705 + Pf6N2E2_2752 0.85 -0.5
3,244,705 + Pf6N2E2_2752 0.85 -1.6
3,244,771 + Pf6N2E2_2752 0.89 -1.5
3,244,943 - -0.7
3,244,943 - +0.3
3,245,130 + -1.3
3,245,131 - -2.3
3,245,131 - -1.5
3,245,410 + Pf6N2E2_2753 0.29 -2.4
3,245,410 + Pf6N2E2_2753 0.29 +0.1
3,245,410 + Pf6N2E2_2753 0.29 -0.2
3,245,709 - Pf6N2E2_2753 0.50 -1.3
3,245,811 - Pf6N2E2_2753 0.57 -1.3
3,246,044 - Pf6N2E2_2753 0.74 -1.3
3,246,093 - Pf6N2E2_2753 0.77 -2.1
3,246,109 - Pf6N2E2_2753 0.78 -2.7
3,246,538 - +8.0
3,246,873 - Pf6N2E2_2754 0.23 +5.2
3,246,873 - Pf6N2E2_2754 0.23 +4.6
3,247,303 - Pf6N2E2_2754 0.68 +0.9
3,247,344 + Pf6N2E2_2754 0.73 +0.7
3,247,344 + Pf6N2E2_2754 0.73 +1.5

Or see this region's nucleotide sequence