Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2752 and Pf6N2E2_2753 are separated by 63 nucleotides Pf6N2E2_2753 and Pf6N2E2_2754 are separated by 234 nucleotides
Pf6N2E2_2752 - Exported zinc metalloprotease YfgC precursor, at 3,243,493 to 3,244,926
_2752
Pf6N2E2_2753 - HtrA protease/chaperone protein, at 3,244,990 to 3,246,420
_2753
Pf6N2E2_2754 - Sigma factor RpoE negative regulatory protein RseB precursor, at 3,246,655 to 3,247,602
_2754
Position (kb)
3244
3245
3246
3247 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 3244.117 kb on + strand, within Pf6N2E2_2752 at 3244.321 kb on + strand, within Pf6N2E2_2752 at 3244.321 kb on + strand, within Pf6N2E2_2752 at 3244.321 kb on + strand, within Pf6N2E2_2752 at 3244.322 kb on - strand, within Pf6N2E2_2752 at 3244.322 kb on - strand, within Pf6N2E2_2752 at 3244.399 kb on + strand, within Pf6N2E2_2752 at 3244.495 kb on + strand, within Pf6N2E2_2752 at 3244.495 kb on + strand, within Pf6N2E2_2752 at 3244.495 kb on + strand, within Pf6N2E2_2752 at 3244.495 kb on + strand, within Pf6N2E2_2752 at 3244.495 kb on + strand, within Pf6N2E2_2752 at 3244.495 kb on + strand, within Pf6N2E2_2752 at 3244.495 kb on + strand, within Pf6N2E2_2752 at 3244.496 kb on - strand, within Pf6N2E2_2752 at 3244.496 kb on - strand, within Pf6N2E2_2752 at 3244.496 kb on - strand, within Pf6N2E2_2752 at 3244.496 kb on - strand, within Pf6N2E2_2752 at 3244.496 kb on - strand, within Pf6N2E2_2752 at 3244.496 kb on - strand, within Pf6N2E2_2752 at 3244.496 kb on - strand, within Pf6N2E2_2752 at 3244.496 kb on - strand, within Pf6N2E2_2752 at 3244.496 kb on - strand, within Pf6N2E2_2752 at 3244.496 kb on - strand, within Pf6N2E2_2752 at 3244.496 kb on - strand, within Pf6N2E2_2752 at 3244.579 kb on + strand, within Pf6N2E2_2752 at 3244.592 kb on - strand, within Pf6N2E2_2752 at 3244.705 kb on + strand, within Pf6N2E2_2752 at 3244.705 kb on + strand, within Pf6N2E2_2752 at 3244.705 kb on + strand, within Pf6N2E2_2752 at 3244.771 kb on + strand, within Pf6N2E2_2752 at 3244.943 kb on - strand at 3244.943 kb on - strand at 3245.130 kb on + strand at 3245.131 kb on - strand at 3245.131 kb on - strand at 3245.410 kb on + strand, within Pf6N2E2_2753 at 3245.410 kb on + strand, within Pf6N2E2_2753 at 3245.410 kb on + strand, within Pf6N2E2_2753 at 3245.709 kb on - strand, within Pf6N2E2_2753 at 3245.811 kb on - strand, within Pf6N2E2_2753 at 3246.044 kb on - strand, within Pf6N2E2_2753 at 3246.093 kb on - strand, within Pf6N2E2_2753 at 3246.109 kb on - strand, within Pf6N2E2_2753 at 3246.538 kb on - strand at 3246.873 kb on - strand, within Pf6N2E2_2754 at 3246.873 kb on - strand, within Pf6N2E2_2754 at 3247.303 kb on - strand, within Pf6N2E2_2754 at 3247.344 kb on + strand, within Pf6N2E2_2754 at 3247.344 kb on + strand, within Pf6N2E2_2754
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 3,244,117 + Pf6N2E2_2752 0.44 +1.1 3,244,321 + Pf6N2E2_2752 0.58 -2.2 3,244,321 + Pf6N2E2_2752 0.58 -0.3 3,244,321 + Pf6N2E2_2752 0.58 -1.2 3,244,322 - Pf6N2E2_2752 0.58 -0.7 3,244,322 - Pf6N2E2_2752 0.58 -2.6 3,244,399 + Pf6N2E2_2752 0.63 -2.5 3,244,495 + Pf6N2E2_2752 0.70 -0.8 3,244,495 + Pf6N2E2_2752 0.70 -1.9 3,244,495 + Pf6N2E2_2752 0.70 -2.3 3,244,495 + Pf6N2E2_2752 0.70 -2.1 3,244,495 + Pf6N2E2_2752 0.70 -1.4 3,244,495 + Pf6N2E2_2752 0.70 -1.1 3,244,495 + Pf6N2E2_2752 0.70 -2.6 3,244,496 - Pf6N2E2_2752 0.70 -1.9 3,244,496 - Pf6N2E2_2752 0.70 -0.2 3,244,496 - Pf6N2E2_2752 0.70 -0.8 3,244,496 - Pf6N2E2_2752 0.70 -2.8 3,244,496 - Pf6N2E2_2752 0.70 -1.5 3,244,496 - Pf6N2E2_2752 0.70 +0.2 3,244,496 - Pf6N2E2_2752 0.70 -0.0 3,244,496 - Pf6N2E2_2752 0.70 -0.5 3,244,496 - Pf6N2E2_2752 0.70 -1.1 3,244,496 - Pf6N2E2_2752 0.70 -0.9 3,244,496 - Pf6N2E2_2752 0.70 -1.0 3,244,579 + Pf6N2E2_2752 0.76 -1.9 3,244,592 - Pf6N2E2_2752 0.77 +2.1 3,244,705 + Pf6N2E2_2752 0.85 -0.9 3,244,705 + Pf6N2E2_2752 0.85 -0.5 3,244,705 + Pf6N2E2_2752 0.85 -1.6 3,244,771 + Pf6N2E2_2752 0.89 -1.5 3,244,943 - -0.7 3,244,943 - +0.3 3,245,130 + -1.3 3,245,131 - -2.3 3,245,131 - -1.5 3,245,410 + Pf6N2E2_2753 0.29 -2.4 3,245,410 + Pf6N2E2_2753 0.29 +0.1 3,245,410 + Pf6N2E2_2753 0.29 -0.2 3,245,709 - Pf6N2E2_2753 0.50 -1.3 3,245,811 - Pf6N2E2_2753 0.57 -1.3 3,246,044 - Pf6N2E2_2753 0.74 -1.3 3,246,093 - Pf6N2E2_2753 0.77 -2.1 3,246,109 - Pf6N2E2_2753 0.78 -2.7 3,246,538 - +8.0 3,246,873 - Pf6N2E2_2754 0.23 +5.2 3,246,873 - Pf6N2E2_2754 0.23 +4.6 3,247,303 - Pf6N2E2_2754 0.68 +0.9 3,247,344 + Pf6N2E2_2754 0.73 +0.7 3,247,344 + Pf6N2E2_2754 0.73 +1.5
Or see this region's nucleotide sequence