Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2712

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2710 and Pf6N2E2_2711 are separated by 12 nucleotidesPf6N2E2_2711 and Pf6N2E2_2712 are separated by 32 nucleotidesPf6N2E2_2712 and Pf6N2E2_2713 are separated by 135 nucleotides Pf6N2E2_2710 - FIG00953701: hypothetical protein, at 3,203,508 to 3,204,050 _2710 Pf6N2E2_2711 - Glutamine amidotransferase, class-II, at 3,204,063 to 3,204,839 _2711 Pf6N2E2_2712 - Permeases of the major facilitator superfamily, at 3,204,872 to 3,205,369 _2712 Pf6N2E2_2713 - Protease II (EC 3.4.21.83), at 3,205,505 to 3,207,559 _2713 Position (kb) 3204 3205 3206Strain fitness (log2 ratio) -2 -1 0 1 2at 3203.968 kb on + strand, within Pf6N2E2_2710at 3204.033 kb on + strandat 3204.033 kb on + strandat 3204.033 kb on + strandat 3204.033 kb on + strandat 3204.034 kb on - strandat 3204.034 kb on - strandat 3204.034 kb on - strandat 3204.034 kb on - strandat 3204.034 kb on - strandat 3204.034 kb on - strandat 3204.034 kb on - strandat 3204.037 kb on + strandat 3204.037 kb on + strandat 3204.037 kb on + strandat 3204.037 kb on + strandat 3204.038 kb on - strandat 3204.038 kb on - strandat 3204.038 kb on - strandat 3204.038 kb on - strandat 3204.038 kb on - strandat 3204.050 kb on + strandat 3204.051 kb on - strandat 3204.051 kb on - strandat 3204.051 kb on - strandat 3204.051 kb on - strandat 3204.216 kb on + strand, within Pf6N2E2_2711at 3204.217 kb on - strand, within Pf6N2E2_2711at 3204.217 kb on - strand, within Pf6N2E2_2711at 3204.217 kb on - strand, within Pf6N2E2_2711at 3204.292 kb on + strand, within Pf6N2E2_2711at 3204.379 kb on - strand, within Pf6N2E2_2711at 3204.569 kb on + strand, within Pf6N2E2_2711at 3204.570 kb on - strand, within Pf6N2E2_2711at 3204.609 kb on - strand, within Pf6N2E2_2711at 3204.609 kb on - strand, within Pf6N2E2_2711at 3204.609 kb on - strand, within Pf6N2E2_2711at 3204.718 kb on + strand, within Pf6N2E2_2711at 3204.718 kb on + strand, within Pf6N2E2_2711at 3204.718 kb on + strand, within Pf6N2E2_2711at 3204.718 kb on + strand, within Pf6N2E2_2711at 3204.719 kb on - strand, within Pf6N2E2_2711at 3204.829 kb on - strandat 3205.072 kb on - strand, within Pf6N2E2_2712at 3205.095 kb on + strand, within Pf6N2E2_2712at 3205.095 kb on + strand, within Pf6N2E2_2712at 3205.095 kb on + strand, within Pf6N2E2_2712at 3205.096 kb on - strand, within Pf6N2E2_2712at 3205.096 kb on - strand, within Pf6N2E2_2712at 3205.096 kb on - strand, within Pf6N2E2_2712at 3205.096 kb on - strand, within Pf6N2E2_2712at 3205.166 kb on - strand, within Pf6N2E2_2712at 3205.202 kb on + strand, within Pf6N2E2_2712at 3205.203 kb on - strand, within Pf6N2E2_2712at 3205.203 kb on - strand, within Pf6N2E2_2712at 3205.203 kb on - strand, within Pf6N2E2_2712at 3205.210 kb on + strand, within Pf6N2E2_2712at 3205.293 kb on - strand, within Pf6N2E2_2712at 3205.293 kb on - strand, within Pf6N2E2_2712at 3205.324 kb on - strandat 3205.344 kb on + strandat 3205.344 kb on + strandat 3205.344 kb on + strandat 3205.345 kb on - strandat 3205.393 kb on + strandat 3205.393 kb on + strandat 3205.393 kb on + strandat 3205.393 kb on + strandat 3205.393 kb on + strandat 3205.393 kb on + strandat 3205.394 kb on - strandat 3205.394 kb on - strandat 3205.394 kb on - strandat 3205.394 kb on - strandat 3205.394 kb on - strandat 3205.395 kb on + strandat 3205.395 kb on + strandat 3205.395 kb on + strandat 3205.395 kb on + strandat 3205.396 kb on - strandat 3205.396 kb on - strandat 3205.396 kb on - strandat 3205.396 kb on - strandat 3205.485 kb on - strandat 3205.485 kb on - strandat 3205.512 kb on + strandat 3205.512 kb on + strandat 3205.513 kb on - strandat 3205.569 kb on - strandat 3205.569 kb on - strandat 3205.569 kb on - strandat 3205.610 kb on + strandat 3205.611 kb on - strandat 3205.748 kb on + strand, within Pf6N2E2_2713at 3205.748 kb on + strand, within Pf6N2E2_2713at 3205.748 kb on + strand, within Pf6N2E2_2713at 3205.749 kb on - strand, within Pf6N2E2_2713at 3205.749 kb on - strand, within Pf6N2E2_2713at 3205.749 kb on - strand, within Pf6N2E2_2713at 3205.749 kb on - strand, within Pf6N2E2_2713at 3205.749 kb on - strand, within Pf6N2E2_2713at 3205.749 kb on - strand, within Pf6N2E2_2713at 3205.751 kb on + strand, within Pf6N2E2_2713at 3205.751 kb on + strand, within Pf6N2E2_2713at 3205.751 kb on + strand, within Pf6N2E2_2713at 3205.752 kb on - strand, within Pf6N2E2_2713at 3205.752 kb on - strand, within Pf6N2E2_2713at 3205.752 kb on - strand, within Pf6N2E2_2713at 3205.752 kb on - strand, within Pf6N2E2_2713at 3205.752 kb on - strand, within Pf6N2E2_2713at 3205.752 kb on - strand, within Pf6N2E2_2713at 3205.752 kb on - strand, within Pf6N2E2_2713at 3205.752 kb on - strand, within Pf6N2E2_2713at 3205.752 kb on - strand, within Pf6N2E2_2713at 3205.935 kb on - strand, within Pf6N2E2_2713at 3205.964 kb on + strand, within Pf6N2E2_2713at 3205.964 kb on + strand, within Pf6N2E2_2713at 3205.964 kb on + strand, within Pf6N2E2_2713at 3205.964 kb on + strand, within Pf6N2E2_2713at 3205.964 kb on + strand, within Pf6N2E2_2713at 3205.964 kb on + strand, within Pf6N2E2_2713at 3205.964 kb on + strand, within Pf6N2E2_2713at 3205.964 kb on + strand, within Pf6N2E2_2713at 3205.964 kb on + strand, within Pf6N2E2_2713at 3205.965 kb on - strand, within Pf6N2E2_2713at 3205.965 kb on - strand, within Pf6N2E2_2713at 3205.965 kb on - strand, within Pf6N2E2_2713at 3205.971 kb on + strand, within Pf6N2E2_2713at 3205.972 kb on - strand, within Pf6N2E2_2713at 3205.972 kb on - strand, within Pf6N2E2_2713at 3205.972 kb on - strand, within Pf6N2E2_2713at 3205.972 kb on - strand, within Pf6N2E2_2713at 3206.184 kb on - strand, within Pf6N2E2_2713at 3206.282 kb on - strand, within Pf6N2E2_2713at 3206.315 kb on + strand, within Pf6N2E2_2713at 3206.315 kb on + strand, within Pf6N2E2_2713at 3206.315 kb on + strand, within Pf6N2E2_2713at 3206.316 kb on - strand, within Pf6N2E2_2713at 3206.316 kb on - strand, within Pf6N2E2_2713at 3206.316 kb on - strand, within Pf6N2E2_2713at 3206.316 kb on - strand, within Pf6N2E2_2713at 3206.316 kb on - strand, within Pf6N2E2_2713at 3206.316 kb on - strand, within Pf6N2E2_2713at 3206.316 kb on - strand, within Pf6N2E2_2713at 3206.316 kb on - strand, within Pf6N2E2_2713

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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3,203,968 + Pf6N2E2_2710 0.85 +0.6
3,204,033 + +0.1
3,204,033 + +1.0
3,204,033 + -0.9
3,204,033 + +0.3
3,204,034 - +0.1
3,204,034 - +0.4
3,204,034 - +0.5
3,204,034 - +0.3
3,204,034 - +0.3
3,204,034 - -1.1
3,204,034 - +1.1
3,204,037 + +2.0
3,204,037 + +0.0
3,204,037 + +0.8
3,204,037 + +1.0
3,204,038 - -1.8
3,204,038 - -0.1
3,204,038 - -0.6
3,204,038 - -0.1
3,204,038 - +1.3
3,204,050 + +0.5
3,204,051 - -0.5
3,204,051 - -0.8
3,204,051 - -0.5
3,204,051 - -0.5
3,204,216 + Pf6N2E2_2711 0.20 +0.4
3,204,217 - Pf6N2E2_2711 0.20 -2.1
3,204,217 - Pf6N2E2_2711 0.20 +0.1
3,204,217 - Pf6N2E2_2711 0.20 +0.5
3,204,292 + Pf6N2E2_2711 0.29 -1.6
3,204,379 - Pf6N2E2_2711 0.41 +2.2
3,204,569 + Pf6N2E2_2711 0.65 +0.8
3,204,570 - Pf6N2E2_2711 0.65 +1.5
3,204,609 - Pf6N2E2_2711 0.70 +0.3
3,204,609 - Pf6N2E2_2711 0.70 -0.5
3,204,609 - Pf6N2E2_2711 0.70 +0.2
3,204,718 + Pf6N2E2_2711 0.84 +0.3
3,204,718 + Pf6N2E2_2711 0.84 +0.2
3,204,718 + Pf6N2E2_2711 0.84 -0.2
3,204,718 + Pf6N2E2_2711 0.84 +0.6
3,204,719 - Pf6N2E2_2711 0.84 -0.2
3,204,829 - +0.6
3,205,072 - Pf6N2E2_2712 0.40 +1.6
3,205,095 + Pf6N2E2_2712 0.45 +2.1
3,205,095 + Pf6N2E2_2712 0.45 +1.3
3,205,095 + Pf6N2E2_2712 0.45 +1.3
3,205,096 - Pf6N2E2_2712 0.45 +2.7
3,205,096 - Pf6N2E2_2712 0.45 +2.1
3,205,096 - Pf6N2E2_2712 0.45 +2.5
3,205,096 - Pf6N2E2_2712 0.45 +2.0
3,205,166 - Pf6N2E2_2712 0.59 +1.4
3,205,202 + Pf6N2E2_2712 0.66 +0.8
3,205,203 - Pf6N2E2_2712 0.66 +2.0
3,205,203 - Pf6N2E2_2712 0.66 +2.0
3,205,203 - Pf6N2E2_2712 0.66 +2.0
3,205,210 + Pf6N2E2_2712 0.68 +1.1
3,205,293 - Pf6N2E2_2712 0.85 +2.5
3,205,293 - Pf6N2E2_2712 0.85 +2.6
3,205,324 - +0.8
3,205,344 + +1.5
3,205,344 + +2.3
3,205,344 + +1.8
3,205,345 - +1.4
3,205,393 + +1.7
3,205,393 + +1.7
3,205,393 + +2.1
3,205,393 + +2.0
3,205,393 + +1.6
3,205,393 + +2.0
3,205,394 - +1.3
3,205,394 - -0.9
3,205,394 - +1.8
3,205,394 - +1.4
3,205,394 - +1.4
3,205,395 + +2.4
3,205,395 + +2.2
3,205,395 + +1.3
3,205,395 + +1.8
3,205,396 - +0.2
3,205,396 - -1.6
3,205,396 - +1.0
3,205,396 - -0.0
3,205,485 - -0.6
3,205,485 - +0.5
3,205,512 + +1.1
3,205,512 + +2.3
3,205,513 - +0.7
3,205,569 - -0.4
3,205,569 - -1.8
3,205,569 - +0.2
3,205,610 + +0.4
3,205,611 - -0.2
3,205,748 + Pf6N2E2_2713 0.12 -0.8
3,205,748 + Pf6N2E2_2713 0.12 -2.2
3,205,748 + Pf6N2E2_2713 0.12 +0.3
3,205,749 - Pf6N2E2_2713 0.12 +0.3
3,205,749 - Pf6N2E2_2713 0.12 +0.1
3,205,749 - Pf6N2E2_2713 0.12 -0.2
3,205,749 - Pf6N2E2_2713 0.12 -1.5
3,205,749 - Pf6N2E2_2713 0.12 +1.4
3,205,749 - Pf6N2E2_2713 0.12 -0.3
3,205,751 + Pf6N2E2_2713 0.12 -0.3
3,205,751 + Pf6N2E2_2713 0.12 +0.8
3,205,751 + Pf6N2E2_2713 0.12 +0.3
3,205,752 - Pf6N2E2_2713 0.12 -0.7
3,205,752 - Pf6N2E2_2713 0.12 -0.2
3,205,752 - Pf6N2E2_2713 0.12 -1.1
3,205,752 - Pf6N2E2_2713 0.12 -0.8
3,205,752 - Pf6N2E2_2713 0.12 -0.2
3,205,752 - Pf6N2E2_2713 0.12 -0.8
3,205,752 - Pf6N2E2_2713 0.12 -1.5
3,205,752 - Pf6N2E2_2713 0.12 +0.0
3,205,752 - Pf6N2E2_2713 0.12 +0.2
3,205,935 - Pf6N2E2_2713 0.21 -0.6
3,205,964 + Pf6N2E2_2713 0.22 +1.2
3,205,964 + Pf6N2E2_2713 0.22 -0.4
3,205,964 + Pf6N2E2_2713 0.22 +0.6
3,205,964 + Pf6N2E2_2713 0.22 +1.7
3,205,964 + Pf6N2E2_2713 0.22 -1.1
3,205,964 + Pf6N2E2_2713 0.22 +1.3
3,205,964 + Pf6N2E2_2713 0.22 -0.1
3,205,964 + Pf6N2E2_2713 0.22 +0.1
3,205,964 + Pf6N2E2_2713 0.22 +0.1
3,205,965 - Pf6N2E2_2713 0.22 -0.6
3,205,965 - Pf6N2E2_2713 0.22 +0.3
3,205,965 - Pf6N2E2_2713 0.22 -1.0
3,205,971 + Pf6N2E2_2713 0.23 -0.9
3,205,972 - Pf6N2E2_2713 0.23 -0.7
3,205,972 - Pf6N2E2_2713 0.23 +0.5
3,205,972 - Pf6N2E2_2713 0.23 -1.2
3,205,972 - Pf6N2E2_2713 0.23 -0.3
3,206,184 - Pf6N2E2_2713 0.33 -0.8
3,206,282 - Pf6N2E2_2713 0.38 -0.3
3,206,315 + Pf6N2E2_2713 0.39 +1.3
3,206,315 + Pf6N2E2_2713 0.39 +0.3
3,206,315 + Pf6N2E2_2713 0.39 +2.0
3,206,316 - Pf6N2E2_2713 0.39 +0.6
3,206,316 - Pf6N2E2_2713 0.39 +0.0
3,206,316 - Pf6N2E2_2713 0.39 +0.1
3,206,316 - Pf6N2E2_2713 0.39 +0.0
3,206,316 - Pf6N2E2_2713 0.39 -0.5
3,206,316 - Pf6N2E2_2713 0.39 -0.8
3,206,316 - Pf6N2E2_2713 0.39 -1.1
3,206,316 - Pf6N2E2_2713 0.39 +1.8

Or see this region's nucleotide sequence