Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2710 and Pf6N2E2_2711 are separated by 12 nucleotides Pf6N2E2_2711 and Pf6N2E2_2712 are separated by 32 nucleotides Pf6N2E2_2712 and Pf6N2E2_2713 are separated by 135 nucleotides
Pf6N2E2_2710 - FIG00953701: hypothetical protein, at 3,203,508 to 3,204,050
_2710
Pf6N2E2_2711 - Glutamine amidotransferase, class-II, at 3,204,063 to 3,204,839
_2711
Pf6N2E2_2712 - Permeases of the major facilitator superfamily, at 3,204,872 to 3,205,369
_2712
Pf6N2E2_2713 - Protease II (EC 3.4.21.83), at 3,205,505 to 3,207,559
_2713
Position (kb)
3204
3205
3206 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3203.968 kb on + strand, within Pf6N2E2_2710 at 3204.033 kb on + strand at 3204.033 kb on + strand at 3204.033 kb on + strand at 3204.033 kb on + strand at 3204.034 kb on - strand at 3204.034 kb on - strand at 3204.034 kb on - strand at 3204.034 kb on - strand at 3204.034 kb on - strand at 3204.034 kb on - strand at 3204.034 kb on - strand at 3204.037 kb on + strand at 3204.037 kb on + strand at 3204.037 kb on + strand at 3204.037 kb on + strand at 3204.038 kb on - strand at 3204.038 kb on - strand at 3204.038 kb on - strand at 3204.038 kb on - strand at 3204.038 kb on - strand at 3204.050 kb on + strand at 3204.051 kb on - strand at 3204.051 kb on - strand at 3204.051 kb on - strand at 3204.051 kb on - strand at 3204.216 kb on + strand, within Pf6N2E2_2711 at 3204.217 kb on - strand, within Pf6N2E2_2711 at 3204.217 kb on - strand, within Pf6N2E2_2711 at 3204.217 kb on - strand, within Pf6N2E2_2711 at 3204.292 kb on + strand, within Pf6N2E2_2711 at 3204.379 kb on - strand, within Pf6N2E2_2711 at 3204.569 kb on + strand, within Pf6N2E2_2711 at 3204.570 kb on - strand, within Pf6N2E2_2711 at 3204.609 kb on - strand, within Pf6N2E2_2711 at 3204.609 kb on - strand, within Pf6N2E2_2711 at 3204.609 kb on - strand, within Pf6N2E2_2711 at 3204.718 kb on + strand, within Pf6N2E2_2711 at 3204.718 kb on + strand, within Pf6N2E2_2711 at 3204.718 kb on + strand, within Pf6N2E2_2711 at 3204.718 kb on + strand, within Pf6N2E2_2711 at 3204.719 kb on - strand, within Pf6N2E2_2711 at 3204.829 kb on - strand at 3205.072 kb on - strand, within Pf6N2E2_2712 at 3205.095 kb on + strand, within Pf6N2E2_2712 at 3205.095 kb on + strand, within Pf6N2E2_2712 at 3205.095 kb on + strand, within Pf6N2E2_2712 at 3205.096 kb on - strand, within Pf6N2E2_2712 at 3205.096 kb on - strand, within Pf6N2E2_2712 at 3205.096 kb on - strand, within Pf6N2E2_2712 at 3205.096 kb on - strand, within Pf6N2E2_2712 at 3205.166 kb on - strand, within Pf6N2E2_2712 at 3205.202 kb on + strand, within Pf6N2E2_2712 at 3205.203 kb on - strand, within Pf6N2E2_2712 at 3205.203 kb on - strand, within Pf6N2E2_2712 at 3205.203 kb on - strand, within Pf6N2E2_2712 at 3205.210 kb on + strand, within Pf6N2E2_2712 at 3205.293 kb on - strand, within Pf6N2E2_2712 at 3205.293 kb on - strand, within Pf6N2E2_2712 at 3205.324 kb on - strand at 3205.344 kb on + strand at 3205.344 kb on + strand at 3205.344 kb on + strand at 3205.345 kb on - strand at 3205.393 kb on + strand at 3205.393 kb on + strand at 3205.393 kb on + strand at 3205.393 kb on + strand at 3205.393 kb on + strand at 3205.393 kb on + strand at 3205.394 kb on - strand at 3205.394 kb on - strand at 3205.394 kb on - strand at 3205.394 kb on - strand at 3205.394 kb on - strand at 3205.395 kb on + strand at 3205.395 kb on + strand at 3205.395 kb on + strand at 3205.395 kb on + strand at 3205.396 kb on - strand at 3205.396 kb on - strand at 3205.396 kb on - strand at 3205.396 kb on - strand at 3205.485 kb on - strand at 3205.485 kb on - strand at 3205.512 kb on + strand at 3205.512 kb on + strand at 3205.513 kb on - strand at 3205.569 kb on - strand at 3205.569 kb on - strand at 3205.569 kb on - strand at 3205.610 kb on + strand at 3205.611 kb on - strand at 3205.748 kb on + strand, within Pf6N2E2_2713 at 3205.748 kb on + strand, within Pf6N2E2_2713 at 3205.748 kb on + strand, within Pf6N2E2_2713 at 3205.749 kb on - strand, within Pf6N2E2_2713 at 3205.749 kb on - strand, within Pf6N2E2_2713 at 3205.749 kb on - strand, within Pf6N2E2_2713 at 3205.749 kb on - strand, within Pf6N2E2_2713 at 3205.749 kb on - strand, within Pf6N2E2_2713 at 3205.749 kb on - strand, within Pf6N2E2_2713 at 3205.751 kb on + strand, within Pf6N2E2_2713 at 3205.751 kb on + strand, within Pf6N2E2_2713 at 3205.751 kb on + strand, within Pf6N2E2_2713 at 3205.752 kb on - strand, within Pf6N2E2_2713 at 3205.752 kb on - strand, within Pf6N2E2_2713 at 3205.752 kb on - strand, within Pf6N2E2_2713 at 3205.752 kb on - strand, within Pf6N2E2_2713 at 3205.752 kb on - strand, within Pf6N2E2_2713 at 3205.752 kb on - strand, within Pf6N2E2_2713 at 3205.752 kb on - strand, within Pf6N2E2_2713 at 3205.752 kb on - strand, within Pf6N2E2_2713 at 3205.752 kb on - strand, within Pf6N2E2_2713 at 3205.935 kb on - strand, within Pf6N2E2_2713 at 3205.964 kb on + strand, within Pf6N2E2_2713 at 3205.964 kb on + strand, within Pf6N2E2_2713 at 3205.964 kb on + strand, within Pf6N2E2_2713 at 3205.964 kb on + strand, within Pf6N2E2_2713 at 3205.964 kb on + strand, within Pf6N2E2_2713 at 3205.964 kb on + strand, within Pf6N2E2_2713 at 3205.964 kb on + strand, within Pf6N2E2_2713 at 3205.964 kb on + strand, within Pf6N2E2_2713 at 3205.964 kb on + strand, within Pf6N2E2_2713 at 3205.965 kb on - strand, within Pf6N2E2_2713 at 3205.965 kb on - strand, within Pf6N2E2_2713 at 3205.965 kb on - strand, within Pf6N2E2_2713 at 3205.971 kb on + strand, within Pf6N2E2_2713 at 3205.972 kb on - strand, within Pf6N2E2_2713 at 3205.972 kb on - strand, within Pf6N2E2_2713 at 3205.972 kb on - strand, within Pf6N2E2_2713 at 3205.972 kb on - strand, within Pf6N2E2_2713 at 3206.184 kb on - strand, within Pf6N2E2_2713 at 3206.282 kb on - strand, within Pf6N2E2_2713 at 3206.315 kb on + strand, within Pf6N2E2_2713 at 3206.315 kb on + strand, within Pf6N2E2_2713 at 3206.315 kb on + strand, within Pf6N2E2_2713 at 3206.316 kb on - strand, within Pf6N2E2_2713 at 3206.316 kb on - strand, within Pf6N2E2_2713 at 3206.316 kb on - strand, within Pf6N2E2_2713 at 3206.316 kb on - strand, within Pf6N2E2_2713 at 3206.316 kb on - strand, within Pf6N2E2_2713 at 3206.316 kb on - strand, within Pf6N2E2_2713 at 3206.316 kb on - strand, within Pf6N2E2_2713 at 3206.316 kb on - strand, within Pf6N2E2_2713
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 3,203,968 + Pf6N2E2_2710 0.85 +0.6 3,204,033 + +0.1 3,204,033 + +1.0 3,204,033 + -0.9 3,204,033 + +0.3 3,204,034 - +0.1 3,204,034 - +0.4 3,204,034 - +0.5 3,204,034 - +0.3 3,204,034 - +0.3 3,204,034 - -1.1 3,204,034 - +1.1 3,204,037 + +2.0 3,204,037 + +0.0 3,204,037 + +0.8 3,204,037 + +1.0 3,204,038 - -1.8 3,204,038 - -0.1 3,204,038 - -0.6 3,204,038 - -0.1 3,204,038 - +1.3 3,204,050 + +0.5 3,204,051 - -0.5 3,204,051 - -0.8 3,204,051 - -0.5 3,204,051 - -0.5 3,204,216 + Pf6N2E2_2711 0.20 +0.4 3,204,217 - Pf6N2E2_2711 0.20 -2.1 3,204,217 - Pf6N2E2_2711 0.20 +0.1 3,204,217 - Pf6N2E2_2711 0.20 +0.5 3,204,292 + Pf6N2E2_2711 0.29 -1.6 3,204,379 - Pf6N2E2_2711 0.41 +2.2 3,204,569 + Pf6N2E2_2711 0.65 +0.8 3,204,570 - Pf6N2E2_2711 0.65 +1.5 3,204,609 - Pf6N2E2_2711 0.70 +0.3 3,204,609 - Pf6N2E2_2711 0.70 -0.5 3,204,609 - Pf6N2E2_2711 0.70 +0.2 3,204,718 + Pf6N2E2_2711 0.84 +0.3 3,204,718 + Pf6N2E2_2711 0.84 +0.2 3,204,718 + Pf6N2E2_2711 0.84 -0.2 3,204,718 + Pf6N2E2_2711 0.84 +0.6 3,204,719 - Pf6N2E2_2711 0.84 -0.2 3,204,829 - +0.6 3,205,072 - Pf6N2E2_2712 0.40 +1.6 3,205,095 + Pf6N2E2_2712 0.45 +2.1 3,205,095 + Pf6N2E2_2712 0.45 +1.3 3,205,095 + Pf6N2E2_2712 0.45 +1.3 3,205,096 - Pf6N2E2_2712 0.45 +2.7 3,205,096 - Pf6N2E2_2712 0.45 +2.1 3,205,096 - Pf6N2E2_2712 0.45 +2.5 3,205,096 - Pf6N2E2_2712 0.45 +2.0 3,205,166 - Pf6N2E2_2712 0.59 +1.4 3,205,202 + Pf6N2E2_2712 0.66 +0.8 3,205,203 - Pf6N2E2_2712 0.66 +2.0 3,205,203 - Pf6N2E2_2712 0.66 +2.0 3,205,203 - Pf6N2E2_2712 0.66 +2.0 3,205,210 + Pf6N2E2_2712 0.68 +1.1 3,205,293 - Pf6N2E2_2712 0.85 +2.5 3,205,293 - Pf6N2E2_2712 0.85 +2.6 3,205,324 - +0.8 3,205,344 + +1.5 3,205,344 + +2.3 3,205,344 + +1.8 3,205,345 - +1.4 3,205,393 + +1.7 3,205,393 + +1.7 3,205,393 + +2.1 3,205,393 + +2.0 3,205,393 + +1.6 3,205,393 + +2.0 3,205,394 - +1.3 3,205,394 - -0.9 3,205,394 - +1.8 3,205,394 - +1.4 3,205,394 - +1.4 3,205,395 + +2.4 3,205,395 + +2.2 3,205,395 + +1.3 3,205,395 + +1.8 3,205,396 - +0.2 3,205,396 - -1.6 3,205,396 - +1.0 3,205,396 - -0.0 3,205,485 - -0.6 3,205,485 - +0.5 3,205,512 + +1.1 3,205,512 + +2.3 3,205,513 - +0.7 3,205,569 - -0.4 3,205,569 - -1.8 3,205,569 - +0.2 3,205,610 + +0.4 3,205,611 - -0.2 3,205,748 + Pf6N2E2_2713 0.12 -0.8 3,205,748 + Pf6N2E2_2713 0.12 -2.2 3,205,748 + Pf6N2E2_2713 0.12 +0.3 3,205,749 - Pf6N2E2_2713 0.12 +0.3 3,205,749 - Pf6N2E2_2713 0.12 +0.1 3,205,749 - Pf6N2E2_2713 0.12 -0.2 3,205,749 - Pf6N2E2_2713 0.12 -1.5 3,205,749 - Pf6N2E2_2713 0.12 +1.4 3,205,749 - Pf6N2E2_2713 0.12 -0.3 3,205,751 + Pf6N2E2_2713 0.12 -0.3 3,205,751 + Pf6N2E2_2713 0.12 +0.8 3,205,751 + Pf6N2E2_2713 0.12 +0.3 3,205,752 - Pf6N2E2_2713 0.12 -0.7 3,205,752 - Pf6N2E2_2713 0.12 -0.2 3,205,752 - Pf6N2E2_2713 0.12 -1.1 3,205,752 - Pf6N2E2_2713 0.12 -0.8 3,205,752 - Pf6N2E2_2713 0.12 -0.2 3,205,752 - Pf6N2E2_2713 0.12 -0.8 3,205,752 - Pf6N2E2_2713 0.12 -1.5 3,205,752 - Pf6N2E2_2713 0.12 +0.0 3,205,752 - Pf6N2E2_2713 0.12 +0.2 3,205,935 - Pf6N2E2_2713 0.21 -0.6 3,205,964 + Pf6N2E2_2713 0.22 +1.2 3,205,964 + Pf6N2E2_2713 0.22 -0.4 3,205,964 + Pf6N2E2_2713 0.22 +0.6 3,205,964 + Pf6N2E2_2713 0.22 +1.7 3,205,964 + Pf6N2E2_2713 0.22 -1.1 3,205,964 + Pf6N2E2_2713 0.22 +1.3 3,205,964 + Pf6N2E2_2713 0.22 -0.1 3,205,964 + Pf6N2E2_2713 0.22 +0.1 3,205,964 + Pf6N2E2_2713 0.22 +0.1 3,205,965 - Pf6N2E2_2713 0.22 -0.6 3,205,965 - Pf6N2E2_2713 0.22 +0.3 3,205,965 - Pf6N2E2_2713 0.22 -1.0 3,205,971 + Pf6N2E2_2713 0.23 -0.9 3,205,972 - Pf6N2E2_2713 0.23 -0.7 3,205,972 - Pf6N2E2_2713 0.23 +0.5 3,205,972 - Pf6N2E2_2713 0.23 -1.2 3,205,972 - Pf6N2E2_2713 0.23 -0.3 3,206,184 - Pf6N2E2_2713 0.33 -0.8 3,206,282 - Pf6N2E2_2713 0.38 -0.3 3,206,315 + Pf6N2E2_2713 0.39 +1.3 3,206,315 + Pf6N2E2_2713 0.39 +0.3 3,206,315 + Pf6N2E2_2713 0.39 +2.0 3,206,316 - Pf6N2E2_2713 0.39 +0.6 3,206,316 - Pf6N2E2_2713 0.39 +0.0 3,206,316 - Pf6N2E2_2713 0.39 +0.1 3,206,316 - Pf6N2E2_2713 0.39 +0.0 3,206,316 - Pf6N2E2_2713 0.39 -0.5 3,206,316 - Pf6N2E2_2713 0.39 -0.8 3,206,316 - Pf6N2E2_2713 0.39 -1.1 3,206,316 - Pf6N2E2_2713 0.39 +1.8
Or see this region's nucleotide sequence