Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2585 and Pf6N2E2_2586 are separated by 88 nucleotides Pf6N2E2_2586 and Pf6N2E2_2587 are separated by 31 nucleotides
Pf6N2E2_2585 - Flagellar hook-length control protein FliK, at 3,042,373 to 3,043,746
_2585
Pf6N2E2_2586 - Hpt domain protein, at 3,043,835 to 3,044,179
_2586
Pf6N2E2_2587 - Serine phosphatase RsbU, regulator of sigma subunit, at 3,044,211 to 3,045,917
_2587
Position (kb)
3043
3044
3045 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3042.864 kb on + strand, within Pf6N2E2_2585 at 3042.865 kb on - strand, within Pf6N2E2_2585 at 3042.865 kb on - strand, within Pf6N2E2_2585 at 3043.549 kb on - strand, within Pf6N2E2_2585 at 3043.650 kb on + strand at 3043.728 kb on + strand at 3043.728 kb on + strand at 3043.729 kb on - strand at 3043.729 kb on - strand at 3043.729 kb on - strand at 3043.774 kb on + strand at 3043.775 kb on - strand at 3043.775 kb on - strand at 3043.775 kb on - strand at 3043.775 kb on - strand at 3043.779 kb on - strand at 3043.779 kb on - strand at 3043.881 kb on + strand, within Pf6N2E2_2586 at 3043.882 kb on - strand, within Pf6N2E2_2586 at 3044.018 kb on - strand, within Pf6N2E2_2586 at 3044.388 kb on + strand, within Pf6N2E2_2587 at 3044.388 kb on + strand, within Pf6N2E2_2587 at 3044.388 kb on + strand, within Pf6N2E2_2587 at 3044.443 kb on + strand, within Pf6N2E2_2587 at 3044.443 kb on + strand, within Pf6N2E2_2587 at 3044.444 kb on - strand, within Pf6N2E2_2587 at 3044.444 kb on - strand, within Pf6N2E2_2587 at 3044.485 kb on + strand, within Pf6N2E2_2587 at 3044.485 kb on + strand, within Pf6N2E2_2587 at 3044.485 kb on + strand, within Pf6N2E2_2587 at 3044.486 kb on - strand, within Pf6N2E2_2587 at 3044.486 kb on - strand, within Pf6N2E2_2587 at 3044.489 kb on - strand, within Pf6N2E2_2587 at 3044.489 kb on - strand, within Pf6N2E2_2587 at 3044.563 kb on + strand, within Pf6N2E2_2587 at 3044.564 kb on - strand, within Pf6N2E2_2587 at 3044.564 kb on - strand, within Pf6N2E2_2587 at 3044.564 kb on - strand, within Pf6N2E2_2587 at 3044.584 kb on + strand, within Pf6N2E2_2587 at 3044.585 kb on - strand, within Pf6N2E2_2587 at 3044.585 kb on - strand, within Pf6N2E2_2587 at 3044.625 kb on + strand, within Pf6N2E2_2587 at 3044.626 kb on - strand, within Pf6N2E2_2587 at 3044.626 kb on - strand, within Pf6N2E2_2587 at 3044.626 kb on - strand, within Pf6N2E2_2587 at 3044.641 kb on + strand, within Pf6N2E2_2587 at 3044.641 kb on + strand, within Pf6N2E2_2587 at 3044.641 kb on + strand, within Pf6N2E2_2587 at 3044.641 kb on + strand, within Pf6N2E2_2587 at 3044.641 kb on + strand, within Pf6N2E2_2587 at 3044.642 kb on - strand, within Pf6N2E2_2587 at 3044.978 kb on + strand, within Pf6N2E2_2587 at 3044.978 kb on + strand, within Pf6N2E2_2587 at 3044.978 kb on + strand, within Pf6N2E2_2587 at 3044.978 kb on + strand, within Pf6N2E2_2587 at 3044.979 kb on - strand, within Pf6N2E2_2587 at 3044.979 kb on - strand, within Pf6N2E2_2587 at 3044.979 kb on - strand, within Pf6N2E2_2587 at 3044.979 kb on - strand, within Pf6N2E2_2587 at 3044.979 kb on - strand, within Pf6N2E2_2587 at 3044.979 kb on - strand, within Pf6N2E2_2587 at 3044.979 kb on - strand, within Pf6N2E2_2587 at 3045.053 kb on + strand, within Pf6N2E2_2587 at 3045.083 kb on - strand, within Pf6N2E2_2587 at 3045.141 kb on + strand, within Pf6N2E2_2587 at 3045.141 kb on + strand, within Pf6N2E2_2587 at 3045.141 kb on + strand, within Pf6N2E2_2587 at 3045.141 kb on + strand, within Pf6N2E2_2587 at 3045.142 kb on - strand, within Pf6N2E2_2587 at 3045.142 kb on - strand, within Pf6N2E2_2587 at 3045.142 kb on - strand, within Pf6N2E2_2587
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 3,042,864 + Pf6N2E2_2585 0.36 +0.7 3,042,865 - Pf6N2E2_2585 0.36 +0.9 3,042,865 - Pf6N2E2_2585 0.36 +0.2 3,043,549 - Pf6N2E2_2585 0.86 -0.1 3,043,650 + -0.2 3,043,728 + +0.9 3,043,728 + +2.4 3,043,729 - +0.5 3,043,729 - +0.6 3,043,729 - +1.9 3,043,774 + +1.1 3,043,775 - +0.6 3,043,775 - +0.7 3,043,775 - +0.3 3,043,775 - -0.6 3,043,779 - +0.6 3,043,779 - -1.6 3,043,881 + Pf6N2E2_2586 0.13 +0.3 3,043,882 - Pf6N2E2_2586 0.14 -2.7 3,044,018 - Pf6N2E2_2586 0.53 -0.1 3,044,388 + Pf6N2E2_2587 0.10 +1.6 3,044,388 + Pf6N2E2_2587 0.10 -1.0 3,044,388 + Pf6N2E2_2587 0.10 -0.5 3,044,443 + Pf6N2E2_2587 0.14 +2.4 3,044,443 + Pf6N2E2_2587 0.14 +0.9 3,044,444 - Pf6N2E2_2587 0.14 +0.1 3,044,444 - Pf6N2E2_2587 0.14 +1.1 3,044,485 + Pf6N2E2_2587 0.16 +0.2 3,044,485 + Pf6N2E2_2587 0.16 -0.9 3,044,485 + Pf6N2E2_2587 0.16 -0.5 3,044,486 - Pf6N2E2_2587 0.16 +0.5 3,044,486 - Pf6N2E2_2587 0.16 +0.7 3,044,489 - Pf6N2E2_2587 0.16 +0.5 3,044,489 - Pf6N2E2_2587 0.16 +1.3 3,044,563 + Pf6N2E2_2587 0.21 +0.0 3,044,564 - Pf6N2E2_2587 0.21 +0.8 3,044,564 - Pf6N2E2_2587 0.21 +0.0 3,044,564 - Pf6N2E2_2587 0.21 +0.5 3,044,584 + Pf6N2E2_2587 0.22 -1.3 3,044,585 - Pf6N2E2_2587 0.22 +0.2 3,044,585 - Pf6N2E2_2587 0.22 +1.1 3,044,625 + Pf6N2E2_2587 0.24 -1.4 3,044,626 - Pf6N2E2_2587 0.24 -0.7 3,044,626 - Pf6N2E2_2587 0.24 -1.8 3,044,626 - Pf6N2E2_2587 0.24 +0.8 3,044,641 + Pf6N2E2_2587 0.25 -0.6 3,044,641 + Pf6N2E2_2587 0.25 -1.9 3,044,641 + Pf6N2E2_2587 0.25 -0.2 3,044,641 + Pf6N2E2_2587 0.25 +0.2 3,044,641 + Pf6N2E2_2587 0.25 -0.1 3,044,642 - Pf6N2E2_2587 0.25 +1.1 3,044,978 + Pf6N2E2_2587 0.45 -0.3 3,044,978 + Pf6N2E2_2587 0.45 -0.4 3,044,978 + Pf6N2E2_2587 0.45 +0.2 3,044,978 + Pf6N2E2_2587 0.45 -0.1 3,044,979 - Pf6N2E2_2587 0.45 +0.0 3,044,979 - Pf6N2E2_2587 0.45 -1.4 3,044,979 - Pf6N2E2_2587 0.45 -0.5 3,044,979 - Pf6N2E2_2587 0.45 -0.5 3,044,979 - Pf6N2E2_2587 0.45 +1.0 3,044,979 - Pf6N2E2_2587 0.45 -1.9 3,044,979 - Pf6N2E2_2587 0.45 +1.0 3,045,053 + Pf6N2E2_2587 0.49 -1.1 3,045,083 - Pf6N2E2_2587 0.51 -0.1 3,045,141 + Pf6N2E2_2587 0.54 -0.6 3,045,141 + Pf6N2E2_2587 0.54 +1.3 3,045,141 + Pf6N2E2_2587 0.54 -0.5 3,045,141 + Pf6N2E2_2587 0.54 -2.2 3,045,142 - Pf6N2E2_2587 0.55 +0.7 3,045,142 - Pf6N2E2_2587 0.55 +0.5 3,045,142 - Pf6N2E2_2587 0.55 -0.4
Or see this region's nucleotide sequence