Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2586

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2585 and Pf6N2E2_2586 are separated by 88 nucleotidesPf6N2E2_2586 and Pf6N2E2_2587 are separated by 31 nucleotides Pf6N2E2_2585 - Flagellar hook-length control protein FliK, at 3,042,373 to 3,043,746 _2585 Pf6N2E2_2586 - Hpt domain protein, at 3,043,835 to 3,044,179 _2586 Pf6N2E2_2587 - Serine phosphatase RsbU, regulator of sigma subunit, at 3,044,211 to 3,045,917 _2587 Position (kb) 3043 3044 3045Strain fitness (log2 ratio) -2 -1 0 1 2at 3042.864 kb on + strand, within Pf6N2E2_2585at 3042.865 kb on - strand, within Pf6N2E2_2585at 3042.865 kb on - strand, within Pf6N2E2_2585at 3043.549 kb on - strand, within Pf6N2E2_2585at 3043.650 kb on + strandat 3043.728 kb on + strandat 3043.728 kb on + strandat 3043.729 kb on - strandat 3043.729 kb on - strandat 3043.729 kb on - strandat 3043.774 kb on + strandat 3043.775 kb on - strandat 3043.775 kb on - strandat 3043.775 kb on - strandat 3043.775 kb on - strandat 3043.779 kb on - strandat 3043.779 kb on - strandat 3043.881 kb on + strand, within Pf6N2E2_2586at 3043.882 kb on - strand, within Pf6N2E2_2586at 3044.018 kb on - strand, within Pf6N2E2_2586at 3044.388 kb on + strand, within Pf6N2E2_2587at 3044.388 kb on + strand, within Pf6N2E2_2587at 3044.388 kb on + strand, within Pf6N2E2_2587at 3044.443 kb on + strand, within Pf6N2E2_2587at 3044.443 kb on + strand, within Pf6N2E2_2587at 3044.444 kb on - strand, within Pf6N2E2_2587at 3044.444 kb on - strand, within Pf6N2E2_2587at 3044.485 kb on + strand, within Pf6N2E2_2587at 3044.485 kb on + strand, within Pf6N2E2_2587at 3044.485 kb on + strand, within Pf6N2E2_2587at 3044.486 kb on - strand, within Pf6N2E2_2587at 3044.486 kb on - strand, within Pf6N2E2_2587at 3044.489 kb on - strand, within Pf6N2E2_2587at 3044.489 kb on - strand, within Pf6N2E2_2587at 3044.563 kb on + strand, within Pf6N2E2_2587at 3044.564 kb on - strand, within Pf6N2E2_2587at 3044.564 kb on - strand, within Pf6N2E2_2587at 3044.564 kb on - strand, within Pf6N2E2_2587at 3044.584 kb on + strand, within Pf6N2E2_2587at 3044.585 kb on - strand, within Pf6N2E2_2587at 3044.585 kb on - strand, within Pf6N2E2_2587at 3044.625 kb on + strand, within Pf6N2E2_2587at 3044.626 kb on - strand, within Pf6N2E2_2587at 3044.626 kb on - strand, within Pf6N2E2_2587at 3044.626 kb on - strand, within Pf6N2E2_2587at 3044.641 kb on + strand, within Pf6N2E2_2587at 3044.641 kb on + strand, within Pf6N2E2_2587at 3044.641 kb on + strand, within Pf6N2E2_2587at 3044.641 kb on + strand, within Pf6N2E2_2587at 3044.641 kb on + strand, within Pf6N2E2_2587at 3044.642 kb on - strand, within Pf6N2E2_2587at 3044.978 kb on + strand, within Pf6N2E2_2587at 3044.978 kb on + strand, within Pf6N2E2_2587at 3044.978 kb on + strand, within Pf6N2E2_2587at 3044.978 kb on + strand, within Pf6N2E2_2587at 3044.979 kb on - strand, within Pf6N2E2_2587at 3044.979 kb on - strand, within Pf6N2E2_2587at 3044.979 kb on - strand, within Pf6N2E2_2587at 3044.979 kb on - strand, within Pf6N2E2_2587at 3044.979 kb on - strand, within Pf6N2E2_2587at 3044.979 kb on - strand, within Pf6N2E2_2587at 3044.979 kb on - strand, within Pf6N2E2_2587at 3045.053 kb on + strand, within Pf6N2E2_2587at 3045.083 kb on - strand, within Pf6N2E2_2587at 3045.141 kb on + strand, within Pf6N2E2_2587at 3045.141 kb on + strand, within Pf6N2E2_2587at 3045.141 kb on + strand, within Pf6N2E2_2587at 3045.141 kb on + strand, within Pf6N2E2_2587at 3045.142 kb on - strand, within Pf6N2E2_2587at 3045.142 kb on - strand, within Pf6N2E2_2587at 3045.142 kb on - strand, within Pf6N2E2_2587

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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3,042,864 + Pf6N2E2_2585 0.36 +0.7
3,042,865 - Pf6N2E2_2585 0.36 +0.9
3,042,865 - Pf6N2E2_2585 0.36 +0.2
3,043,549 - Pf6N2E2_2585 0.86 -0.1
3,043,650 + -0.2
3,043,728 + +0.9
3,043,728 + +2.4
3,043,729 - +0.5
3,043,729 - +0.6
3,043,729 - +1.9
3,043,774 + +1.1
3,043,775 - +0.6
3,043,775 - +0.7
3,043,775 - +0.3
3,043,775 - -0.6
3,043,779 - +0.6
3,043,779 - -1.6
3,043,881 + Pf6N2E2_2586 0.13 +0.3
3,043,882 - Pf6N2E2_2586 0.14 -2.7
3,044,018 - Pf6N2E2_2586 0.53 -0.1
3,044,388 + Pf6N2E2_2587 0.10 +1.6
3,044,388 + Pf6N2E2_2587 0.10 -1.0
3,044,388 + Pf6N2E2_2587 0.10 -0.5
3,044,443 + Pf6N2E2_2587 0.14 +2.4
3,044,443 + Pf6N2E2_2587 0.14 +0.9
3,044,444 - Pf6N2E2_2587 0.14 +0.1
3,044,444 - Pf6N2E2_2587 0.14 +1.1
3,044,485 + Pf6N2E2_2587 0.16 +0.2
3,044,485 + Pf6N2E2_2587 0.16 -0.9
3,044,485 + Pf6N2E2_2587 0.16 -0.5
3,044,486 - Pf6N2E2_2587 0.16 +0.5
3,044,486 - Pf6N2E2_2587 0.16 +0.7
3,044,489 - Pf6N2E2_2587 0.16 +0.5
3,044,489 - Pf6N2E2_2587 0.16 +1.3
3,044,563 + Pf6N2E2_2587 0.21 +0.0
3,044,564 - Pf6N2E2_2587 0.21 +0.8
3,044,564 - Pf6N2E2_2587 0.21 +0.0
3,044,564 - Pf6N2E2_2587 0.21 +0.5
3,044,584 + Pf6N2E2_2587 0.22 -1.3
3,044,585 - Pf6N2E2_2587 0.22 +0.2
3,044,585 - Pf6N2E2_2587 0.22 +1.1
3,044,625 + Pf6N2E2_2587 0.24 -1.4
3,044,626 - Pf6N2E2_2587 0.24 -0.7
3,044,626 - Pf6N2E2_2587 0.24 -1.8
3,044,626 - Pf6N2E2_2587 0.24 +0.8
3,044,641 + Pf6N2E2_2587 0.25 -0.6
3,044,641 + Pf6N2E2_2587 0.25 -1.9
3,044,641 + Pf6N2E2_2587 0.25 -0.2
3,044,641 + Pf6N2E2_2587 0.25 +0.2
3,044,641 + Pf6N2E2_2587 0.25 -0.1
3,044,642 - Pf6N2E2_2587 0.25 +1.1
3,044,978 + Pf6N2E2_2587 0.45 -0.3
3,044,978 + Pf6N2E2_2587 0.45 -0.4
3,044,978 + Pf6N2E2_2587 0.45 +0.2
3,044,978 + Pf6N2E2_2587 0.45 -0.1
3,044,979 - Pf6N2E2_2587 0.45 +0.0
3,044,979 - Pf6N2E2_2587 0.45 -1.4
3,044,979 - Pf6N2E2_2587 0.45 -0.5
3,044,979 - Pf6N2E2_2587 0.45 -0.5
3,044,979 - Pf6N2E2_2587 0.45 +1.0
3,044,979 - Pf6N2E2_2587 0.45 -1.9
3,044,979 - Pf6N2E2_2587 0.45 +1.0
3,045,053 + Pf6N2E2_2587 0.49 -1.1
3,045,083 - Pf6N2E2_2587 0.51 -0.1
3,045,141 + Pf6N2E2_2587 0.54 -0.6
3,045,141 + Pf6N2E2_2587 0.54 +1.3
3,045,141 + Pf6N2E2_2587 0.54 -0.5
3,045,141 + Pf6N2E2_2587 0.54 -2.2
3,045,142 - Pf6N2E2_2587 0.55 +0.7
3,045,142 - Pf6N2E2_2587 0.55 +0.5
3,045,142 - Pf6N2E2_2587 0.55 -0.4

Or see this region's nucleotide sequence