Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2574

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2572 and Pf6N2E2_2573 are separated by 155 nucleotidesPf6N2E2_2573 and Pf6N2E2_2574 overlap by 4 nucleotidesPf6N2E2_2574 and Pf6N2E2_2575 are separated by 116 nucleotides Pf6N2E2_2572 - Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY, at 3,030,664 to 3,031,047 _2572 Pf6N2E2_2573 - RNA polymerase sigma factor for flagellar operon, at 3,031,203 to 3,031,946 _2573 Pf6N2E2_2574 - Flagellar synthesis regulator FleN, at 3,031,943 to 3,032,773 _2574 Pf6N2E2_2575 - Flagellar biosynthesis protein FlhF, at 3,032,890 to 3,034,239 _2575 Position (kb) 3031 3032 3033Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3030.988 kb on + strand, within Pf6N2E2_2572at 3031.067 kb on + strandat 3031.067 kb on + strandat 3031.068 kb on - strandat 3031.154 kb on + strandat 3031.155 kb on - strandat 3031.155 kb on - strandat 3031.261 kb on - strandat 3031.261 kb on - strandat 3031.334 kb on - strand, within Pf6N2E2_2573at 3031.334 kb on - strand, within Pf6N2E2_2573at 3031.334 kb on - strand, within Pf6N2E2_2573at 3031.520 kb on + strand, within Pf6N2E2_2573at 3031.520 kb on + strand, within Pf6N2E2_2573at 3031.521 kb on - strand, within Pf6N2E2_2573at 3031.540 kb on + strand, within Pf6N2E2_2573at 3031.586 kb on + strand, within Pf6N2E2_2573at 3031.604 kb on + strand, within Pf6N2E2_2573at 3031.644 kb on - strand, within Pf6N2E2_2573at 3031.723 kb on + strand, within Pf6N2E2_2573at 3031.723 kb on + strand, within Pf6N2E2_2573at 3031.724 kb on - strand, within Pf6N2E2_2573at 3031.724 kb on - strand, within Pf6N2E2_2573at 3031.724 kb on - strand, within Pf6N2E2_2573at 3031.757 kb on - strand, within Pf6N2E2_2573at 3031.846 kb on + strand, within Pf6N2E2_2573at 3031.846 kb on + strand, within Pf6N2E2_2573at 3031.847 kb on - strand, within Pf6N2E2_2573at 3031.892 kb on - strandat 3031.919 kb on - strandat 3031.919 kb on - strandat 3031.931 kb on - strandat 3031.931 kb on - strandat 3031.947 kb on - strandat 3032.154 kb on + strand, within Pf6N2E2_2574at 3032.154 kb on + strand, within Pf6N2E2_2574at 3032.271 kb on + strand, within Pf6N2E2_2574at 3032.795 kb on - strandat 3032.795 kb on - strandat 3032.798 kb on + strandat 3032.799 kb on - strandat 3032.833 kb on + strandat 3032.834 kb on - strandat 3032.834 kb on - strandat 3032.834 kb on - strandat 3032.863 kb on + strandat 3032.863 kb on + strandat 3032.864 kb on - strandat 3032.864 kb on - strandat 3032.864 kb on - strandat 3032.864 kb on - strandat 3032.864 kb on - strandat 3032.864 kb on - strandat 3032.864 kb on - strandat 3032.864 kb on - strandat 3032.868 kb on - strandat 3032.887 kb on - strandat 3032.887 kb on - strandat 3032.887 kb on - strandat 3032.887 kb on - strandat 3032.918 kb on + strandat 3032.919 kb on - strandat 3032.919 kb on - strandat 3032.919 kb on - strandat 3032.919 kb on - strandat 3032.923 kb on - strandat 3032.923 kb on - strandat 3032.923 kb on - strandat 3032.935 kb on - strandat 3032.935 kb on - strandat 3032.935 kb on - strandat 3032.935 kb on - strandat 3033.065 kb on - strand, within Pf6N2E2_2575at 3033.065 kb on - strand, within Pf6N2E2_2575at 3033.065 kb on - strand, within Pf6N2E2_2575at 3033.159 kb on - strand, within Pf6N2E2_2575at 3033.159 kb on - strand, within Pf6N2E2_2575at 3033.159 kb on - strand, within Pf6N2E2_2575at 3033.159 kb on - strand, within Pf6N2E2_2575at 3033.168 kb on - strand, within Pf6N2E2_2575at 3033.168 kb on - strand, within Pf6N2E2_2575at 3033.308 kb on - strand, within Pf6N2E2_2575at 3033.308 kb on - strand, within Pf6N2E2_2575at 3033.479 kb on - strand, within Pf6N2E2_2575at 3033.479 kb on - strand, within Pf6N2E2_2575at 3033.479 kb on - strand, within Pf6N2E2_2575at 3033.479 kb on - strand, within Pf6N2E2_2575at 3033.479 kb on - strand, within Pf6N2E2_2575at 3033.479 kb on - strand, within Pf6N2E2_2575at 3033.479 kb on - strand, within Pf6N2E2_2575at 3033.479 kb on - strand, within Pf6N2E2_2575

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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3,030,988 + Pf6N2E2_2572 0.84 -1.7
3,031,067 + +0.5
3,031,067 + +1.4
3,031,068 - -0.2
3,031,154 + +1.4
3,031,155 - +0.2
3,031,155 - +0.1
3,031,261 - +0.6
3,031,261 - +0.3
3,031,334 - Pf6N2E2_2573 0.18 +0.2
3,031,334 - Pf6N2E2_2573 0.18 -1.5
3,031,334 - Pf6N2E2_2573 0.18 +0.7
3,031,520 + Pf6N2E2_2573 0.43 -0.9
3,031,520 + Pf6N2E2_2573 0.43 +2.3
3,031,521 - Pf6N2E2_2573 0.43 +1.3
3,031,540 + Pf6N2E2_2573 0.45 +0.0
3,031,586 + Pf6N2E2_2573 0.51 -0.5
3,031,604 + Pf6N2E2_2573 0.54 +0.7
3,031,644 - Pf6N2E2_2573 0.59 -0.4
3,031,723 + Pf6N2E2_2573 0.70 +0.7
3,031,723 + Pf6N2E2_2573 0.70 -0.1
3,031,724 - Pf6N2E2_2573 0.70 -1.3
3,031,724 - Pf6N2E2_2573 0.70 +1.3
3,031,724 - Pf6N2E2_2573 0.70 +0.8
3,031,757 - Pf6N2E2_2573 0.74 +0.6
3,031,846 + Pf6N2E2_2573 0.86 +0.8
3,031,846 + Pf6N2E2_2573 0.86 -1.0
3,031,847 - Pf6N2E2_2573 0.87 +0.9
3,031,892 - +0.5
3,031,919 - +0.6
3,031,919 - +0.7
3,031,931 - +1.7
3,031,931 - +0.4
3,031,947 - -0.2
3,032,154 + Pf6N2E2_2574 0.25 -1.7
3,032,154 + Pf6N2E2_2574 0.25 +1.3
3,032,271 + Pf6N2E2_2574 0.39 -1.5
3,032,795 - -0.4
3,032,795 - +0.3
3,032,798 + -0.7
3,032,799 - +0.3
3,032,833 + -2.7
3,032,834 - +0.1
3,032,834 - -0.3
3,032,834 - +0.4
3,032,863 + -1.0
3,032,863 + -0.7
3,032,864 - -1.2
3,032,864 - -1.3
3,032,864 - +2.3
3,032,864 - -0.6
3,032,864 - -0.9
3,032,864 - -0.4
3,032,864 - -2.1
3,032,864 - -0.6
3,032,868 - -0.2
3,032,887 - +0.1
3,032,887 - -0.5
3,032,887 - -0.4
3,032,887 - +2.4
3,032,918 + -2.0
3,032,919 - +0.1
3,032,919 - +0.1
3,032,919 - +1.3
3,032,919 - -0.1
3,032,923 - -0.2
3,032,923 - +0.2
3,032,923 - +0.0
3,032,935 - -0.3
3,032,935 - -3.2
3,032,935 - +1.1
3,032,935 - +0.3
3,033,065 - Pf6N2E2_2575 0.13 +0.3
3,033,065 - Pf6N2E2_2575 0.13 +0.4
3,033,065 - Pf6N2E2_2575 0.13 +0.1
3,033,159 - Pf6N2E2_2575 0.20 -0.9
3,033,159 - Pf6N2E2_2575 0.20 +1.2
3,033,159 - Pf6N2E2_2575 0.20 +0.7
3,033,159 - Pf6N2E2_2575 0.20 -0.0
3,033,168 - Pf6N2E2_2575 0.21 +0.7
3,033,168 - Pf6N2E2_2575 0.21 -0.1
3,033,308 - Pf6N2E2_2575 0.31 -0.5
3,033,308 - Pf6N2E2_2575 0.31 -0.3
3,033,479 - Pf6N2E2_2575 0.44 -1.5
3,033,479 - Pf6N2E2_2575 0.44 -0.1
3,033,479 - Pf6N2E2_2575 0.44 +1.8
3,033,479 - Pf6N2E2_2575 0.44 -0.9
3,033,479 - Pf6N2E2_2575 0.44 +0.7
3,033,479 - Pf6N2E2_2575 0.44 -1.7
3,033,479 - Pf6N2E2_2575 0.44 +0.7
3,033,479 - Pf6N2E2_2575 0.44 -0.5

Or see this region's nucleotide sequence