Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2559 and Pf6N2E2_2560 overlap by 4 nucleotides Pf6N2E2_2560 and Pf6N2E2_2561 are separated by 295 nucleotides Pf6N2E2_2561 and Pf6N2E2_2562 overlap by 4 nucleotides Pf6N2E2_2562 and Pf6N2E2_2563 are separated by 252 nucleotides Pf6N2E2_2563 and Pf6N2E2_2564 are separated by 1 nucleotides
Pf6N2E2_2559 - ABC transporter involved in cytochrome c biogenesis, CcmB subunit, at 3,018,331 to 3,018,999
_2559
Pf6N2E2_2560 - ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA, at 3,018,996 to 3,019,535
_2560
Pf6N2E2_2561 - FIG00955434: hypothetical protein, at 3,019,831 to 3,021,402
_2561
Pf6N2E2_2562 - FlhB domain protein, at 3,021,399 to 3,021,728
_2562
Pf6N2E2_2563 - FIG00953562: hypothetical protein, at 3,021,981 to 3,022,376
_2563
Pf6N2E2_2564 - Positive regulator of CheA protein activity (CheW), at 3,022,378 to 3,022,863
_2564
Position (kb)
3019
3020
3021
3022 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3019.000 kb on - strand at 3019.647 kb on - strand at 3019.649 kb on - strand at 3019.649 kb on - strand at 3019.649 kb on - strand at 3019.649 kb on - strand at 3019.649 kb on - strand at 3019.649 kb on - strand at 3019.649 kb on - strand at 3019.649 kb on - strand at 3019.649 kb on - strand at 3019.649 kb on - strand at 3019.693 kb on + strand at 3019.693 kb on + strand at 3019.693 kb on + strand at 3019.693 kb on + strand at 3019.693 kb on + strand at 3019.693 kb on + strand at 3019.693 kb on + strand at 3019.694 kb on - strand at 3019.694 kb on - strand at 3019.694 kb on - strand at 3019.694 kb on - strand at 3019.774 kb on + strand at 3019.774 kb on + strand at 3019.775 kb on - strand at 3019.776 kb on + strand at 3019.776 kb on + strand at 3019.776 kb on + strand at 3019.776 kb on + strand at 3019.776 kb on + strand at 3019.776 kb on + strand at 3019.776 kb on + strand at 3019.776 kb on + strand at 3019.776 kb on + strand at 3019.776 kb on + strand at 3019.776 kb on + strand at 3019.777 kb on - strand at 3019.777 kb on - strand at 3019.777 kb on - strand at 3019.777 kb on - strand at 3019.777 kb on - strand at 3019.777 kb on - strand at 3019.777 kb on - strand at 3019.777 kb on - strand at 3019.777 kb on - strand at 3019.777 kb on - strand at 3019.777 kb on - strand at 3019.777 kb on - strand at 3019.777 kb on - strand at 3019.777 kb on - strand at 3019.790 kb on + strand at 3019.791 kb on - strand at 3019.806 kb on + strand at 3019.806 kb on + strand at 3019.807 kb on - strand at 3019.884 kb on + strand at 3019.885 kb on - strand at 3020.267 kb on - strand, within Pf6N2E2_2561 at 3020.780 kb on + strand, within Pf6N2E2_2561 at 3021.223 kb on - strand, within Pf6N2E2_2561 at 3021.723 kb on + strand at 3021.724 kb on - strand at 3021.928 kb on + strand at 3021.928 kb on + strand at 3021.928 kb on + strand at 3022.001 kb on + strand at 3022.001 kb on + strand at 3022.001 kb on + strand at 3022.001 kb on + strand at 3022.001 kb on + strand at 3022.002 kb on - strand at 3022.002 kb on - strand at 3022.002 kb on - strand at 3022.302 kb on + strand, within Pf6N2E2_2563 at 3022.302 kb on + strand, within Pf6N2E2_2563 at 3022.302 kb on + strand, within Pf6N2E2_2563 at 3022.302 kb on + strand, within Pf6N2E2_2563 at 3022.302 kb on + strand, within Pf6N2E2_2563 at 3022.302 kb on + strand, within Pf6N2E2_2563 at 3022.302 kb on + strand, within Pf6N2E2_2563 at 3022.302 kb on + strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.303 kb on - strand, within Pf6N2E2_2563 at 3022.304 kb on + strand, within Pf6N2E2_2563 at 3022.304 kb on + strand, within Pf6N2E2_2563 at 3022.304 kb on + strand, within Pf6N2E2_2563 at 3022.304 kb on + strand, within Pf6N2E2_2563 at 3022.305 kb on - strand, within Pf6N2E2_2563 at 3022.305 kb on - strand, within Pf6N2E2_2563 at 3022.305 kb on - strand, within Pf6N2E2_2563 at 3022.305 kb on - strand, within Pf6N2E2_2563 at 3022.305 kb on - strand, within Pf6N2E2_2563 at 3022.306 kb on + strand, within Pf6N2E2_2563 at 3022.306 kb on + strand, within Pf6N2E2_2563 at 3022.306 kb on + strand, within Pf6N2E2_2563 at 3022.306 kb on + strand, within Pf6N2E2_2563 at 3022.307 kb on - strand, within Pf6N2E2_2563 at 3022.307 kb on - strand, within Pf6N2E2_2563 at 3022.307 kb on - strand, within Pf6N2E2_2563 at 3022.307 kb on - strand, within Pf6N2E2_2563 at 3022.363 kb on - strand at 3022.363 kb on - strand at 3022.363 kb on - strand at 3022.384 kb on - strand at 3022.384 kb on - strand at 3022.384 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 3,019,000 - +3.9 3,019,647 - +2.3 3,019,649 - +0.6 3,019,649 - +0.3 3,019,649 - +0.6 3,019,649 - -0.4 3,019,649 - +1.1 3,019,649 - +0.8 3,019,649 - +0.2 3,019,649 - -1.5 3,019,649 - -0.4 3,019,649 - +0.3 3,019,693 + +3.5 3,019,693 + +3.9 3,019,693 + +2.0 3,019,693 + +3.3 3,019,693 + +4.0 3,019,693 + +2.7 3,019,693 + +3.3 3,019,694 - +0.3 3,019,694 - +0.0 3,019,694 - +0.7 3,019,694 - +0.6 3,019,774 + +3.7 3,019,774 + +3.4 3,019,775 - -0.6 3,019,776 + +3.2 3,019,776 + +3.9 3,019,776 + +3.4 3,019,776 + +3.4 3,019,776 + +3.8 3,019,776 + +2.0 3,019,776 + +3.4 3,019,776 + +3.9 3,019,776 + +2.7 3,019,776 + +3.3 3,019,776 + +3.5 3,019,777 - -2.5 3,019,777 - -0.6 3,019,777 - +1.2 3,019,777 - -0.3 3,019,777 - +0.7 3,019,777 - +0.1 3,019,777 - -1.0 3,019,777 - +0.4 3,019,777 - -0.7 3,019,777 - -0.2 3,019,777 - +0.2 3,019,777 - +1.3 3,019,777 - -2.3 3,019,777 - -1.1 3,019,790 + +3.8 3,019,791 - -0.0 3,019,806 + +2.9 3,019,806 + +2.5 3,019,807 - -1.0 3,019,884 + +0.4 3,019,885 - -0.1 3,020,267 - Pf6N2E2_2561 0.28 -2.2 3,020,780 + Pf6N2E2_2561 0.60 -0.2 3,021,223 - Pf6N2E2_2561 0.89 -0.3 3,021,723 + +0.0 3,021,724 - +2.0 3,021,928 + +0.9 3,021,928 + -0.1 3,021,928 + +0.3 3,022,001 + +0.8 3,022,001 + +0.5 3,022,001 + +3.4 3,022,001 + +0.1 3,022,001 + +0.9 3,022,002 - +0.0 3,022,002 - +0.4 3,022,002 - -1.2 3,022,302 + Pf6N2E2_2563 0.81 -0.2 3,022,302 + Pf6N2E2_2563 0.81 +0.3 3,022,302 + Pf6N2E2_2563 0.81 +1.9 3,022,302 + Pf6N2E2_2563 0.81 +0.6 3,022,302 + Pf6N2E2_2563 0.81 +0.8 3,022,302 + Pf6N2E2_2563 0.81 +1.9 3,022,302 + Pf6N2E2_2563 0.81 +1.1 3,022,302 + Pf6N2E2_2563 0.81 +0.9 3,022,303 - Pf6N2E2_2563 0.81 +0.0 3,022,303 - Pf6N2E2_2563 0.81 +0.1 3,022,303 - Pf6N2E2_2563 0.81 -0.7 3,022,303 - Pf6N2E2_2563 0.81 -0.7 3,022,303 - Pf6N2E2_2563 0.81 -0.2 3,022,303 - Pf6N2E2_2563 0.81 +0.7 3,022,303 - Pf6N2E2_2563 0.81 -0.4 3,022,303 - Pf6N2E2_2563 0.81 +1.6 3,022,303 - Pf6N2E2_2563 0.81 -1.3 3,022,303 - Pf6N2E2_2563 0.81 +0.9 3,022,303 - Pf6N2E2_2563 0.81 -0.1 3,022,303 - Pf6N2E2_2563 0.81 -1.1 3,022,303 - Pf6N2E2_2563 0.81 +0.8 3,022,303 - Pf6N2E2_2563 0.81 +0.3 3,022,303 - Pf6N2E2_2563 0.81 +0.8 3,022,303 - Pf6N2E2_2563 0.81 +1.2 3,022,303 - Pf6N2E2_2563 0.81 -0.1 3,022,303 - Pf6N2E2_2563 0.81 +1.0 3,022,303 - Pf6N2E2_2563 0.81 +0.1 3,022,303 - Pf6N2E2_2563 0.81 +0.7 3,022,303 - Pf6N2E2_2563 0.81 +1.0 3,022,303 - Pf6N2E2_2563 0.81 +0.9 3,022,303 - Pf6N2E2_2563 0.81 -0.5 3,022,303 - Pf6N2E2_2563 0.81 -1.1 3,022,303 - Pf6N2E2_2563 0.81 +1.0 3,022,303 - Pf6N2E2_2563 0.81 -0.1 3,022,303 - Pf6N2E2_2563 0.81 -0.1 3,022,303 - Pf6N2E2_2563 0.81 +0.3 3,022,303 - Pf6N2E2_2563 0.81 +1.0 3,022,304 + Pf6N2E2_2563 0.82 +1.2 3,022,304 + Pf6N2E2_2563 0.82 +1.4 3,022,304 + Pf6N2E2_2563 0.82 -0.4 3,022,304 + Pf6N2E2_2563 0.82 +0.4 3,022,305 - Pf6N2E2_2563 0.82 -0.1 3,022,305 - Pf6N2E2_2563 0.82 +0.5 3,022,305 - Pf6N2E2_2563 0.82 -0.1 3,022,305 - Pf6N2E2_2563 0.82 +0.3 3,022,305 - Pf6N2E2_2563 0.82 +1.0 3,022,306 + Pf6N2E2_2563 0.82 +2.0 3,022,306 + Pf6N2E2_2563 0.82 +0.0 3,022,306 + Pf6N2E2_2563 0.82 +1.4 3,022,306 + Pf6N2E2_2563 0.82 +2.0 3,022,307 - Pf6N2E2_2563 0.82 +1.1 3,022,307 - Pf6N2E2_2563 0.82 +0.8 3,022,307 - Pf6N2E2_2563 0.82 -0.9 3,022,307 - Pf6N2E2_2563 0.82 +0.9 3,022,363 - -0.4 3,022,363 - +0.3 3,022,363 - +1.9 3,022,384 - +0.6 3,022,384 - +1.1 3,022,384 - -0.3
Or see this region's nucleotide sequence