Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2561

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2559 and Pf6N2E2_2560 overlap by 4 nucleotidesPf6N2E2_2560 and Pf6N2E2_2561 are separated by 295 nucleotidesPf6N2E2_2561 and Pf6N2E2_2562 overlap by 4 nucleotidesPf6N2E2_2562 and Pf6N2E2_2563 are separated by 252 nucleotidesPf6N2E2_2563 and Pf6N2E2_2564 are separated by 1 nucleotides Pf6N2E2_2559 - ABC transporter involved in cytochrome c biogenesis, CcmB subunit, at 3,018,331 to 3,018,999 _2559 Pf6N2E2_2560 - ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA, at 3,018,996 to 3,019,535 _2560 Pf6N2E2_2561 - FIG00955434: hypothetical protein, at 3,019,831 to 3,021,402 _2561 Pf6N2E2_2562 - FlhB domain protein, at 3,021,399 to 3,021,728 _2562 Pf6N2E2_2563 - FIG00953562: hypothetical protein, at 3,021,981 to 3,022,376 _2563 Pf6N2E2_2564 - Positive regulator of CheA protein activity (CheW), at 3,022,378 to 3,022,863 _2564 Position (kb) 3019 3020 3021 3022Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3019.000 kb on - strandat 3019.647 kb on - strandat 3019.649 kb on - strandat 3019.649 kb on - strandat 3019.649 kb on - strandat 3019.649 kb on - strandat 3019.649 kb on - strandat 3019.649 kb on - strandat 3019.649 kb on - strandat 3019.649 kb on - strandat 3019.649 kb on - strandat 3019.649 kb on - strandat 3019.693 kb on + strandat 3019.693 kb on + strandat 3019.693 kb on + strandat 3019.693 kb on + strandat 3019.693 kb on + strandat 3019.693 kb on + strandat 3019.693 kb on + strandat 3019.694 kb on - strandat 3019.694 kb on - strandat 3019.694 kb on - strandat 3019.694 kb on - strandat 3019.774 kb on + strandat 3019.774 kb on + strandat 3019.775 kb on - strandat 3019.776 kb on + strandat 3019.776 kb on + strandat 3019.776 kb on + strandat 3019.776 kb on + strandat 3019.776 kb on + strandat 3019.776 kb on + strandat 3019.776 kb on + strandat 3019.776 kb on + strandat 3019.776 kb on + strandat 3019.776 kb on + strandat 3019.776 kb on + strandat 3019.777 kb on - strandat 3019.777 kb on - strandat 3019.777 kb on - strandat 3019.777 kb on - strandat 3019.777 kb on - strandat 3019.777 kb on - strandat 3019.777 kb on - strandat 3019.777 kb on - strandat 3019.777 kb on - strandat 3019.777 kb on - strandat 3019.777 kb on - strandat 3019.777 kb on - strandat 3019.777 kb on - strandat 3019.777 kb on - strandat 3019.790 kb on + strandat 3019.791 kb on - strandat 3019.806 kb on + strandat 3019.806 kb on + strandat 3019.807 kb on - strandat 3019.884 kb on + strandat 3019.885 kb on - strandat 3020.267 kb on - strand, within Pf6N2E2_2561at 3020.780 kb on + strand, within Pf6N2E2_2561at 3021.223 kb on - strand, within Pf6N2E2_2561at 3021.723 kb on + strandat 3021.724 kb on - strandat 3021.928 kb on + strandat 3021.928 kb on + strandat 3021.928 kb on + strandat 3022.001 kb on + strandat 3022.001 kb on + strandat 3022.001 kb on + strandat 3022.001 kb on + strandat 3022.001 kb on + strandat 3022.002 kb on - strandat 3022.002 kb on - strandat 3022.002 kb on - strandat 3022.302 kb on + strand, within Pf6N2E2_2563at 3022.302 kb on + strand, within Pf6N2E2_2563at 3022.302 kb on + strand, within Pf6N2E2_2563at 3022.302 kb on + strand, within Pf6N2E2_2563at 3022.302 kb on + strand, within Pf6N2E2_2563at 3022.302 kb on + strand, within Pf6N2E2_2563at 3022.302 kb on + strand, within Pf6N2E2_2563at 3022.302 kb on + strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.303 kb on - strand, within Pf6N2E2_2563at 3022.304 kb on + strand, within Pf6N2E2_2563at 3022.304 kb on + strand, within Pf6N2E2_2563at 3022.304 kb on + strand, within Pf6N2E2_2563at 3022.304 kb on + strand, within Pf6N2E2_2563at 3022.305 kb on - strand, within Pf6N2E2_2563at 3022.305 kb on - strand, within Pf6N2E2_2563at 3022.305 kb on - strand, within Pf6N2E2_2563at 3022.305 kb on - strand, within Pf6N2E2_2563at 3022.305 kb on - strand, within Pf6N2E2_2563at 3022.306 kb on + strand, within Pf6N2E2_2563at 3022.306 kb on + strand, within Pf6N2E2_2563at 3022.306 kb on + strand, within Pf6N2E2_2563at 3022.306 kb on + strand, within Pf6N2E2_2563at 3022.307 kb on - strand, within Pf6N2E2_2563at 3022.307 kb on - strand, within Pf6N2E2_2563at 3022.307 kb on - strand, within Pf6N2E2_2563at 3022.307 kb on - strand, within Pf6N2E2_2563at 3022.363 kb on - strandat 3022.363 kb on - strandat 3022.363 kb on - strandat 3022.384 kb on - strandat 3022.384 kb on - strandat 3022.384 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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3,019,000 - +3.9
3,019,647 - +2.3
3,019,649 - +0.6
3,019,649 - +0.3
3,019,649 - +0.6
3,019,649 - -0.4
3,019,649 - +1.1
3,019,649 - +0.8
3,019,649 - +0.2
3,019,649 - -1.5
3,019,649 - -0.4
3,019,649 - +0.3
3,019,693 + +3.5
3,019,693 + +3.9
3,019,693 + +2.0
3,019,693 + +3.3
3,019,693 + +4.0
3,019,693 + +2.7
3,019,693 + +3.3
3,019,694 - +0.3
3,019,694 - +0.0
3,019,694 - +0.7
3,019,694 - +0.6
3,019,774 + +3.7
3,019,774 + +3.4
3,019,775 - -0.6
3,019,776 + +3.2
3,019,776 + +3.9
3,019,776 + +3.4
3,019,776 + +3.4
3,019,776 + +3.8
3,019,776 + +2.0
3,019,776 + +3.4
3,019,776 + +3.9
3,019,776 + +2.7
3,019,776 + +3.3
3,019,776 + +3.5
3,019,777 - -2.5
3,019,777 - -0.6
3,019,777 - +1.2
3,019,777 - -0.3
3,019,777 - +0.7
3,019,777 - +0.1
3,019,777 - -1.0
3,019,777 - +0.4
3,019,777 - -0.7
3,019,777 - -0.2
3,019,777 - +0.2
3,019,777 - +1.3
3,019,777 - -2.3
3,019,777 - -1.1
3,019,790 + +3.8
3,019,791 - -0.0
3,019,806 + +2.9
3,019,806 + +2.5
3,019,807 - -1.0
3,019,884 + +0.4
3,019,885 - -0.1
3,020,267 - Pf6N2E2_2561 0.28 -2.2
3,020,780 + Pf6N2E2_2561 0.60 -0.2
3,021,223 - Pf6N2E2_2561 0.89 -0.3
3,021,723 + +0.0
3,021,724 - +2.0
3,021,928 + +0.9
3,021,928 + -0.1
3,021,928 + +0.3
3,022,001 + +0.8
3,022,001 + +0.5
3,022,001 + +3.4
3,022,001 + +0.1
3,022,001 + +0.9
3,022,002 - +0.0
3,022,002 - +0.4
3,022,002 - -1.2
3,022,302 + Pf6N2E2_2563 0.81 -0.2
3,022,302 + Pf6N2E2_2563 0.81 +0.3
3,022,302 + Pf6N2E2_2563 0.81 +1.9
3,022,302 + Pf6N2E2_2563 0.81 +0.6
3,022,302 + Pf6N2E2_2563 0.81 +0.8
3,022,302 + Pf6N2E2_2563 0.81 +1.9
3,022,302 + Pf6N2E2_2563 0.81 +1.1
3,022,302 + Pf6N2E2_2563 0.81 +0.9
3,022,303 - Pf6N2E2_2563 0.81 +0.0
3,022,303 - Pf6N2E2_2563 0.81 +0.1
3,022,303 - Pf6N2E2_2563 0.81 -0.7
3,022,303 - Pf6N2E2_2563 0.81 -0.7
3,022,303 - Pf6N2E2_2563 0.81 -0.2
3,022,303 - Pf6N2E2_2563 0.81 +0.7
3,022,303 - Pf6N2E2_2563 0.81 -0.4
3,022,303 - Pf6N2E2_2563 0.81 +1.6
3,022,303 - Pf6N2E2_2563 0.81 -1.3
3,022,303 - Pf6N2E2_2563 0.81 +0.9
3,022,303 - Pf6N2E2_2563 0.81 -0.1
3,022,303 - Pf6N2E2_2563 0.81 -1.1
3,022,303 - Pf6N2E2_2563 0.81 +0.8
3,022,303 - Pf6N2E2_2563 0.81 +0.3
3,022,303 - Pf6N2E2_2563 0.81 +0.8
3,022,303 - Pf6N2E2_2563 0.81 +1.2
3,022,303 - Pf6N2E2_2563 0.81 -0.1
3,022,303 - Pf6N2E2_2563 0.81 +1.0
3,022,303 - Pf6N2E2_2563 0.81 +0.1
3,022,303 - Pf6N2E2_2563 0.81 +0.7
3,022,303 - Pf6N2E2_2563 0.81 +1.0
3,022,303 - Pf6N2E2_2563 0.81 +0.9
3,022,303 - Pf6N2E2_2563 0.81 -0.5
3,022,303 - Pf6N2E2_2563 0.81 -1.1
3,022,303 - Pf6N2E2_2563 0.81 +1.0
3,022,303 - Pf6N2E2_2563 0.81 -0.1
3,022,303 - Pf6N2E2_2563 0.81 -0.1
3,022,303 - Pf6N2E2_2563 0.81 +0.3
3,022,303 - Pf6N2E2_2563 0.81 +1.0
3,022,304 + Pf6N2E2_2563 0.82 +1.2
3,022,304 + Pf6N2E2_2563 0.82 +1.4
3,022,304 + Pf6N2E2_2563 0.82 -0.4
3,022,304 + Pf6N2E2_2563 0.82 +0.4
3,022,305 - Pf6N2E2_2563 0.82 -0.1
3,022,305 - Pf6N2E2_2563 0.82 +0.5
3,022,305 - Pf6N2E2_2563 0.82 -0.1
3,022,305 - Pf6N2E2_2563 0.82 +0.3
3,022,305 - Pf6N2E2_2563 0.82 +1.0
3,022,306 + Pf6N2E2_2563 0.82 +2.0
3,022,306 + Pf6N2E2_2563 0.82 +0.0
3,022,306 + Pf6N2E2_2563 0.82 +1.4
3,022,306 + Pf6N2E2_2563 0.82 +2.0
3,022,307 - Pf6N2E2_2563 0.82 +1.1
3,022,307 - Pf6N2E2_2563 0.82 +0.8
3,022,307 - Pf6N2E2_2563 0.82 -0.9
3,022,307 - Pf6N2E2_2563 0.82 +0.9
3,022,363 - -0.4
3,022,363 - +0.3
3,022,363 - +1.9
3,022,384 - +0.6
3,022,384 - +1.1
3,022,384 - -0.3

Or see this region's nucleotide sequence