Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_25

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_23 and Pf6N2E2_24 are separated by 127 nucleotidesPf6N2E2_24 and Pf6N2E2_25 are separated by 75 nucleotidesPf6N2E2_25 and Pf6N2E2_26 are separated by 153 nucleotides Pf6N2E2_23 - Hybrid sensory histidine kinase in two-component regulatory system with EvgA, at 58,372 to 61,572 _23 Pf6N2E2_24 - hypothetical protein, at 61,700 to 62,134 _24 Pf6N2E2_25 - DNA-binding response regulator, LuxR family, at 62,210 to 62,863 _25 Pf6N2E2_26 - Pirin, at 63,017 to 63,883 _26 Position (kb) 62 63Strain fitness (log2 ratio) -2 -1 0 1 2at 61.498 kb on - strandat 61.498 kb on - strandat 61.570 kb on + strandat 61.570 kb on + strandat 61.571 kb on - strandat 61.571 kb on - strandat 61.571 kb on - strandat 61.571 kb on - strandat 61.603 kb on + strandat 61.609 kb on + strandat 61.609 kb on + strandat 61.610 kb on - strandat 61.610 kb on - strandat 61.649 kb on + strandat 61.650 kb on - strandat 61.650 kb on - strandat 61.684 kb on + strandat 61.685 kb on - strandat 61.787 kb on + strand, within Pf6N2E2_24at 61.787 kb on + strand, within Pf6N2E2_24at 61.788 kb on - strand, within Pf6N2E2_24at 61.788 kb on - strand, within Pf6N2E2_24at 61.842 kb on - strand, within Pf6N2E2_24at 61.842 kb on - strand, within Pf6N2E2_24at 61.918 kb on + strand, within Pf6N2E2_24at 61.922 kb on + strand, within Pf6N2E2_24at 61.922 kb on + strand, within Pf6N2E2_24at 61.922 kb on + strand, within Pf6N2E2_24at 61.922 kb on + strand, within Pf6N2E2_24at 61.923 kb on - strand, within Pf6N2E2_24at 61.923 kb on - strand, within Pf6N2E2_24at 61.923 kb on - strand, within Pf6N2E2_24at 61.923 kb on - strand, within Pf6N2E2_24at 61.923 kb on - strand, within Pf6N2E2_24at 61.923 kb on - strand, within Pf6N2E2_24at 61.923 kb on - strand, within Pf6N2E2_24at 61.952 kb on + strand, within Pf6N2E2_24at 61.952 kb on + strand, within Pf6N2E2_24at 61.953 kb on - strand, within Pf6N2E2_24at 62.229 kb on + strandat 62.229 kb on + strandat 62.229 kb on + strandat 62.230 kb on - strandat 62.230 kb on - strandat 62.287 kb on - strand, within Pf6N2E2_25at 62.287 kb on - strand, within Pf6N2E2_25at 62.305 kb on + strand, within Pf6N2E2_25at 62.305 kb on + strand, within Pf6N2E2_25at 62.305 kb on + strand, within Pf6N2E2_25at 62.306 kb on - strand, within Pf6N2E2_25at 62.306 kb on - strand, within Pf6N2E2_25at 62.616 kb on - strand, within Pf6N2E2_25at 62.783 kb on + strand, within Pf6N2E2_25at 62.783 kb on + strand, within Pf6N2E2_25at 62.783 kb on + strand, within Pf6N2E2_25at 62.783 kb on + strand, within Pf6N2E2_25at 62.784 kb on - strand, within Pf6N2E2_25at 62.784 kb on - strand, within Pf6N2E2_25at 62.784 kb on - strand, within Pf6N2E2_25at 62.784 kb on - strand, within Pf6N2E2_25at 62.784 kb on - strand, within Pf6N2E2_25at 62.880 kb on + strandat 62.880 kb on + strandat 62.881 kb on - strandat 62.895 kb on - strandat 62.921 kb on - strandat 62.929 kb on - strandat 62.948 kb on + strandat 62.949 kb on - strandat 62.971 kb on + strandat 62.972 kb on - strandat 62.972 kb on - strandat 62.972 kb on - strandat 62.996 kb on - strandat 62.996 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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61,498 - -0.2
61,498 - +0.2
61,570 + -0.6
61,570 + +1.3
61,571 - -1.1
61,571 - +0.2
61,571 - +0.6
61,571 - -0.4
61,603 + -0.6
61,609 + -0.1
61,609 + -0.3
61,610 - +0.1
61,610 - +0.1
61,649 + +1.1
61,650 - +1.9
61,650 - +0.4
61,684 + +1.0
61,685 - +1.5
61,787 + Pf6N2E2_24 0.20 +0.4
61,787 + Pf6N2E2_24 0.20 -0.1
61,788 - Pf6N2E2_24 0.20 -0.2
61,788 - Pf6N2E2_24 0.20 -0.0
61,842 - Pf6N2E2_24 0.33 -1.8
61,842 - Pf6N2E2_24 0.33 -0.0
61,918 + Pf6N2E2_24 0.50 +0.5
61,922 + Pf6N2E2_24 0.51 -0.3
61,922 + Pf6N2E2_24 0.51 +0.7
61,922 + Pf6N2E2_24 0.51 -1.0
61,922 + Pf6N2E2_24 0.51 +0.0
61,923 - Pf6N2E2_24 0.51 +0.1
61,923 - Pf6N2E2_24 0.51 -0.3
61,923 - Pf6N2E2_24 0.51 -2.1
61,923 - Pf6N2E2_24 0.51 +0.5
61,923 - Pf6N2E2_24 0.51 +0.0
61,923 - Pf6N2E2_24 0.51 -1.4
61,923 - Pf6N2E2_24 0.51 -0.4
61,952 + Pf6N2E2_24 0.58 +0.8
61,952 + Pf6N2E2_24 0.58 +2.5
61,953 - Pf6N2E2_24 0.58 -1.1
62,229 + +0.6
62,229 + +0.8
62,229 + -0.5
62,230 - -0.9
62,230 - -0.1
62,287 - Pf6N2E2_25 0.12 -1.7
62,287 - Pf6N2E2_25 0.12 -0.6
62,305 + Pf6N2E2_25 0.15 -0.3
62,305 + Pf6N2E2_25 0.15 -0.6
62,305 + Pf6N2E2_25 0.15 -0.3
62,306 - Pf6N2E2_25 0.15 -0.7
62,306 - Pf6N2E2_25 0.15 +1.2
62,616 - Pf6N2E2_25 0.62 +0.4
62,783 + Pf6N2E2_25 0.88 +0.1
62,783 + Pf6N2E2_25 0.88 +0.0
62,783 + Pf6N2E2_25 0.88 +0.5
62,783 + Pf6N2E2_25 0.88 -0.8
62,784 - Pf6N2E2_25 0.88 -1.0
62,784 - Pf6N2E2_25 0.88 -0.6
62,784 - Pf6N2E2_25 0.88 +0.9
62,784 - Pf6N2E2_25 0.88 -1.0
62,784 - Pf6N2E2_25 0.88 -0.3
62,880 + +1.9
62,880 + -1.9
62,881 - +0.5
62,895 - +0.4
62,921 - -1.5
62,929 - -0.5
62,948 + +1.4
62,949 - +0.4
62,971 + -0.2
62,972 - -0.2
62,972 - -1.8
62,972 - +0.7
62,996 - +0.7
62,996 - +0.1

Or see this region's nucleotide sequence