Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2397

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2396 and Pf6N2E2_2397 overlap by 4 nucleotidesPf6N2E2_2397 and Pf6N2E2_2398 are separated by 175 nucleotides Pf6N2E2_2396 - Sensor histidine kinase, at 2,834,832 to 2,836,166 _2396 Pf6N2E2_2397 - Two-component system response regulator QseB, at 2,836,163 to 2,836,843 _2397 Pf6N2E2_2398 - Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8), at 2,837,019 to 2,838,746 _2398 Position (kb) 2836 2837Strain fitness (log2 ratio) -2 -1 0 1at 2835.198 kb on + strand, within Pf6N2E2_2396at 2835.198 kb on + strand, within Pf6N2E2_2396at 2835.198 kb on + strand, within Pf6N2E2_2396at 2835.199 kb on - strand, within Pf6N2E2_2396at 2835.302 kb on + strand, within Pf6N2E2_2396at 2835.303 kb on - strand, within Pf6N2E2_2396at 2835.303 kb on - strand, within Pf6N2E2_2396at 2835.303 kb on - strand, within Pf6N2E2_2396at 2835.723 kb on + strand, within Pf6N2E2_2396at 2836.265 kb on - strand, within Pf6N2E2_2397at 2836.443 kb on + strand, within Pf6N2E2_2397at 2836.444 kb on - strand, within Pf6N2E2_2397at 2836.444 kb on - strand, within Pf6N2E2_2397at 2836.846 kb on + strandat 2836.847 kb on - strandat 2836.847 kb on - strandat 2836.847 kb on - strandat 2836.865 kb on + strandat 2836.865 kb on + strandat 2836.865 kb on + strandat 2836.866 kb on - strandat 2836.870 kb on + strandat 2836.871 kb on - strandat 2836.871 kb on - strandat 2836.871 kb on - strandat 2836.897 kb on + strandat 2837.006 kb on + strandat 2837.014 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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2,835,198 + Pf6N2E2_2396 0.27 +1.2
2,835,198 + Pf6N2E2_2396 0.27 +1.2
2,835,198 + Pf6N2E2_2396 0.27 +0.5
2,835,199 - Pf6N2E2_2396 0.27 -0.6
2,835,302 + Pf6N2E2_2396 0.35 +1.2
2,835,303 - Pf6N2E2_2396 0.35 -0.1
2,835,303 - Pf6N2E2_2396 0.35 +1.0
2,835,303 - Pf6N2E2_2396 0.35 +1.4
2,835,723 + Pf6N2E2_2396 0.67 +0.8
2,836,265 - Pf6N2E2_2397 0.15 -1.7
2,836,443 + Pf6N2E2_2397 0.41 -0.8
2,836,444 - Pf6N2E2_2397 0.41 -0.1
2,836,444 - Pf6N2E2_2397 0.41 -0.0
2,836,846 + +1.4
2,836,847 - -0.3
2,836,847 - +0.8
2,836,847 - +0.8
2,836,865 + +1.0
2,836,865 + -1.3
2,836,865 + -0.2
2,836,866 - +0.6
2,836,870 + -1.2
2,836,871 - -1.0
2,836,871 - +1.1
2,836,871 - +1.6
2,836,897 + -0.1
2,837,006 + -2.0
2,837,014 + +0.8

Or see this region's nucleotide sequence