Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2340

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2339 and Pf6N2E2_2340 are separated by 143 nucleotidesPf6N2E2_2340 and Pf6N2E2_2341 are separated by 375 nucleotides Pf6N2E2_2339 - Guanine deaminase (EC 3.5.4.3), at 2,771,179 to 2,772,483 _2339 Pf6N2E2_2340 - Transcriptional regulator, GntR family, at 2,772,627 to 2,773,391 _2340 Pf6N2E2_2341 - Benzoate transport protein, at 2,773,767 to 2,774,957 _2341 Position (kb) 2772 2773 2774Strain fitness (log2 ratio) -2 -1 0 1at 2771.695 kb on + strand, within Pf6N2E2_2339at 2771.695 kb on + strand, within Pf6N2E2_2339at 2771.695 kb on + strand, within Pf6N2E2_2339at 2771.722 kb on + strand, within Pf6N2E2_2339at 2771.776 kb on + strand, within Pf6N2E2_2339at 2771.863 kb on + strand, within Pf6N2E2_2339at 2771.864 kb on - strand, within Pf6N2E2_2339at 2771.864 kb on - strand, within Pf6N2E2_2339at 2771.864 kb on - strand, within Pf6N2E2_2339at 2771.864 kb on - strand, within Pf6N2E2_2339at 2771.864 kb on - strand, within Pf6N2E2_2339at 2771.950 kb on + strand, within Pf6N2E2_2339at 2771.950 kb on + strand, within Pf6N2E2_2339at 2771.951 kb on - strand, within Pf6N2E2_2339at 2772.131 kb on + strand, within Pf6N2E2_2339at 2772.131 kb on + strand, within Pf6N2E2_2339at 2772.131 kb on + strand, within Pf6N2E2_2339at 2772.196 kb on + strand, within Pf6N2E2_2339at 2772.196 kb on + strand, within Pf6N2E2_2339at 2772.196 kb on + strand, within Pf6N2E2_2339at 2772.196 kb on + strand, within Pf6N2E2_2339at 2772.197 kb on - strand, within Pf6N2E2_2339at 2772.197 kb on - strand, within Pf6N2E2_2339at 2772.197 kb on - strand, within Pf6N2E2_2339at 2772.197 kb on - strand, within Pf6N2E2_2339at 2772.197 kb on - strand, within Pf6N2E2_2339at 2772.247 kb on + strand, within Pf6N2E2_2339at 2772.343 kb on + strand, within Pf6N2E2_2339at 2772.344 kb on - strand, within Pf6N2E2_2339at 2772.344 kb on - strand, within Pf6N2E2_2339at 2772.451 kb on + strandat 2772.451 kb on + strandat 2772.451 kb on + strandat 2772.452 kb on - strandat 2772.452 kb on - strandat 2772.452 kb on - strandat 2772.463 kb on - strandat 2772.731 kb on + strand, within Pf6N2E2_2340at 2772.853 kb on + strand, within Pf6N2E2_2340at 2773.208 kb on + strand, within Pf6N2E2_2340at 2773.301 kb on + strand, within Pf6N2E2_2340at 2773.302 kb on - strand, within Pf6N2E2_2340at 2773.309 kb on + strand, within Pf6N2E2_2340at 2773.309 kb on + strand, within Pf6N2E2_2340at 2773.309 kb on + strand, within Pf6N2E2_2340at 2773.310 kb on - strand, within Pf6N2E2_2340at 2773.435 kb on + strandat 2773.436 kb on - strandat 2773.436 kb on - strandat 2773.464 kb on - strandat 2773.488 kb on + strandat 2773.488 kb on + strandat 2773.541 kb on - strandat 2773.574 kb on - strandat 2773.744 kb on + strandat 2773.745 kb on - strandat 2773.745 kb on - strandat 2773.746 kb on + strandat 2773.746 kb on + strandat 2773.749 kb on + strandat 2773.975 kb on + strand, within Pf6N2E2_2341at 2774.061 kb on + strand, within Pf6N2E2_2341at 2774.061 kb on + strand, within Pf6N2E2_2341at 2774.061 kb on + strand, within Pf6N2E2_2341at 2774.082 kb on + strand, within Pf6N2E2_2341at 2774.082 kb on + strand, within Pf6N2E2_2341at 2774.082 kb on + strand, within Pf6N2E2_2341at 2774.083 kb on - strand, within Pf6N2E2_2341at 2774.083 kb on - strand, within Pf6N2E2_2341at 2774.083 kb on - strand, within Pf6N2E2_2341at 2774.083 kb on - strand, within Pf6N2E2_2341at 2774.084 kb on + strand, within Pf6N2E2_2341at 2774.085 kb on - strand, within Pf6N2E2_2341at 2774.085 kb on - strand, within Pf6N2E2_2341at 2774.098 kb on + strand, within Pf6N2E2_2341at 2774.098 kb on + strand, within Pf6N2E2_2341at 2774.099 kb on - strand, within Pf6N2E2_2341at 2774.099 kb on - strand, within Pf6N2E2_2341at 2774.265 kb on + strand, within Pf6N2E2_2341at 2774.265 kb on + strand, within Pf6N2E2_2341at 2774.265 kb on + strand, within Pf6N2E2_2341at 2774.266 kb on - strand, within Pf6N2E2_2341at 2774.325 kb on - strand, within Pf6N2E2_2341

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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2,771,695 + Pf6N2E2_2339 0.40 +0.7
2,771,695 + Pf6N2E2_2339 0.40 -0.5
2,771,695 + Pf6N2E2_2339 0.40 -2.0
2,771,722 + Pf6N2E2_2339 0.42 -1.2
2,771,776 + Pf6N2E2_2339 0.46 -0.4
2,771,863 + Pf6N2E2_2339 0.52 -0.5
2,771,864 - Pf6N2E2_2339 0.52 -1.5
2,771,864 - Pf6N2E2_2339 0.52 +0.1
2,771,864 - Pf6N2E2_2339 0.52 -1.8
2,771,864 - Pf6N2E2_2339 0.52 +0.6
2,771,864 - Pf6N2E2_2339 0.52 +1.3
2,771,950 + Pf6N2E2_2339 0.59 -1.9
2,771,950 + Pf6N2E2_2339 0.59 +0.4
2,771,951 - Pf6N2E2_2339 0.59 -1.4
2,772,131 + Pf6N2E2_2339 0.73 +0.6
2,772,131 + Pf6N2E2_2339 0.73 +0.9
2,772,131 + Pf6N2E2_2339 0.73 -0.2
2,772,196 + Pf6N2E2_2339 0.78 -0.5
2,772,196 + Pf6N2E2_2339 0.78 -0.1
2,772,196 + Pf6N2E2_2339 0.78 -0.0
2,772,196 + Pf6N2E2_2339 0.78 -0.2
2,772,197 - Pf6N2E2_2339 0.78 -0.1
2,772,197 - Pf6N2E2_2339 0.78 +0.2
2,772,197 - Pf6N2E2_2339 0.78 +1.0
2,772,197 - Pf6N2E2_2339 0.78 -0.5
2,772,197 - Pf6N2E2_2339 0.78 -1.3
2,772,247 + Pf6N2E2_2339 0.82 -1.1
2,772,343 + Pf6N2E2_2339 0.89 -0.7
2,772,344 - Pf6N2E2_2339 0.89 -0.6
2,772,344 - Pf6N2E2_2339 0.89 +0.4
2,772,451 + +0.2
2,772,451 + +0.6
2,772,451 + -0.2
2,772,452 - -1.7
2,772,452 - -0.4
2,772,452 - -0.5
2,772,463 - -0.1
2,772,731 + Pf6N2E2_2340 0.14 +0.4
2,772,853 + Pf6N2E2_2340 0.30 -2.3
2,773,208 + Pf6N2E2_2340 0.76 -0.0
2,773,301 + Pf6N2E2_2340 0.88 -2.1
2,773,302 - Pf6N2E2_2340 0.88 +0.5
2,773,309 + Pf6N2E2_2340 0.89 -1.2
2,773,309 + Pf6N2E2_2340 0.89 -0.0
2,773,309 + Pf6N2E2_2340 0.89 -1.7
2,773,310 - Pf6N2E2_2340 0.89 -1.3
2,773,435 + +0.5
2,773,436 - -0.1
2,773,436 - -0.8
2,773,464 - -0.5
2,773,488 + -1.1
2,773,488 + +0.1
2,773,541 - -0.1
2,773,574 - -0.5
2,773,744 + +0.3
2,773,745 - -0.4
2,773,745 - +0.7
2,773,746 + +0.7
2,773,746 + -0.5
2,773,749 + -0.5
2,773,975 + Pf6N2E2_2341 0.17 -1.7
2,774,061 + Pf6N2E2_2341 0.25 -0.9
2,774,061 + Pf6N2E2_2341 0.25 -0.7
2,774,061 + Pf6N2E2_2341 0.25 +1.4
2,774,082 + Pf6N2E2_2341 0.26 +0.1
2,774,082 + Pf6N2E2_2341 0.26 -1.2
2,774,082 + Pf6N2E2_2341 0.26 +0.5
2,774,083 - Pf6N2E2_2341 0.27 +0.8
2,774,083 - Pf6N2E2_2341 0.27 +0.6
2,774,083 - Pf6N2E2_2341 0.27 -1.2
2,774,083 - Pf6N2E2_2341 0.27 -2.0
2,774,084 + Pf6N2E2_2341 0.27 +0.3
2,774,085 - Pf6N2E2_2341 0.27 +0.2
2,774,085 - Pf6N2E2_2341 0.27 -1.0
2,774,098 + Pf6N2E2_2341 0.28 -0.8
2,774,098 + Pf6N2E2_2341 0.28 -1.2
2,774,099 - Pf6N2E2_2341 0.28 +0.8
2,774,099 - Pf6N2E2_2341 0.28 -1.0
2,774,265 + Pf6N2E2_2341 0.42 -0.1
2,774,265 + Pf6N2E2_2341 0.42 -0.9
2,774,265 + Pf6N2E2_2341 0.42 +0.1
2,774,266 - Pf6N2E2_2341 0.42 +0.8
2,774,325 - Pf6N2E2_2341 0.47 +0.1

Or see this region's nucleotide sequence