Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2339 and Pf6N2E2_2340 are separated by 143 nucleotides Pf6N2E2_2340 and Pf6N2E2_2341 are separated by 375 nucleotides
Pf6N2E2_2339 - Guanine deaminase (EC 3.5.4.3), at 2,771,179 to 2,772,483
_2339
Pf6N2E2_2340 - Transcriptional regulator, GntR family, at 2,772,627 to 2,773,391
_2340
Pf6N2E2_2341 - Benzoate transport protein, at 2,773,767 to 2,774,957
_2341
Position (kb)
2772
2773
2774 Strain fitness (log2 ratio)
-2
-1
0
1 at 2771.695 kb on + strand, within Pf6N2E2_2339 at 2771.695 kb on + strand, within Pf6N2E2_2339 at 2771.695 kb on + strand, within Pf6N2E2_2339 at 2771.722 kb on + strand, within Pf6N2E2_2339 at 2771.776 kb on + strand, within Pf6N2E2_2339 at 2771.863 kb on + strand, within Pf6N2E2_2339 at 2771.864 kb on - strand, within Pf6N2E2_2339 at 2771.864 kb on - strand, within Pf6N2E2_2339 at 2771.864 kb on - strand, within Pf6N2E2_2339 at 2771.864 kb on - strand, within Pf6N2E2_2339 at 2771.864 kb on - strand, within Pf6N2E2_2339 at 2771.950 kb on + strand, within Pf6N2E2_2339 at 2771.950 kb on + strand, within Pf6N2E2_2339 at 2771.951 kb on - strand, within Pf6N2E2_2339 at 2772.131 kb on + strand, within Pf6N2E2_2339 at 2772.131 kb on + strand, within Pf6N2E2_2339 at 2772.131 kb on + strand, within Pf6N2E2_2339 at 2772.196 kb on + strand, within Pf6N2E2_2339 at 2772.196 kb on + strand, within Pf6N2E2_2339 at 2772.196 kb on + strand, within Pf6N2E2_2339 at 2772.196 kb on + strand, within Pf6N2E2_2339 at 2772.197 kb on - strand, within Pf6N2E2_2339 at 2772.197 kb on - strand, within Pf6N2E2_2339 at 2772.197 kb on - strand, within Pf6N2E2_2339 at 2772.197 kb on - strand, within Pf6N2E2_2339 at 2772.197 kb on - strand, within Pf6N2E2_2339 at 2772.247 kb on + strand, within Pf6N2E2_2339 at 2772.343 kb on + strand, within Pf6N2E2_2339 at 2772.344 kb on - strand, within Pf6N2E2_2339 at 2772.344 kb on - strand, within Pf6N2E2_2339 at 2772.451 kb on + strand at 2772.451 kb on + strand at 2772.451 kb on + strand at 2772.452 kb on - strand at 2772.452 kb on - strand at 2772.452 kb on - strand at 2772.463 kb on - strand at 2772.731 kb on + strand, within Pf6N2E2_2340 at 2772.853 kb on + strand, within Pf6N2E2_2340 at 2773.208 kb on + strand, within Pf6N2E2_2340 at 2773.301 kb on + strand, within Pf6N2E2_2340 at 2773.302 kb on - strand, within Pf6N2E2_2340 at 2773.309 kb on + strand, within Pf6N2E2_2340 at 2773.309 kb on + strand, within Pf6N2E2_2340 at 2773.309 kb on + strand, within Pf6N2E2_2340 at 2773.310 kb on - strand, within Pf6N2E2_2340 at 2773.435 kb on + strand at 2773.436 kb on - strand at 2773.436 kb on - strand at 2773.464 kb on - strand at 2773.488 kb on + strand at 2773.488 kb on + strand at 2773.541 kb on - strand at 2773.574 kb on - strand at 2773.744 kb on + strand at 2773.745 kb on - strand at 2773.745 kb on - strand at 2773.746 kb on + strand at 2773.746 kb on + strand at 2773.749 kb on + strand at 2773.975 kb on + strand, within Pf6N2E2_2341 at 2774.061 kb on + strand, within Pf6N2E2_2341 at 2774.061 kb on + strand, within Pf6N2E2_2341 at 2774.061 kb on + strand, within Pf6N2E2_2341 at 2774.082 kb on + strand, within Pf6N2E2_2341 at 2774.082 kb on + strand, within Pf6N2E2_2341 at 2774.082 kb on + strand, within Pf6N2E2_2341 at 2774.083 kb on - strand, within Pf6N2E2_2341 at 2774.083 kb on - strand, within Pf6N2E2_2341 at 2774.083 kb on - strand, within Pf6N2E2_2341 at 2774.083 kb on - strand, within Pf6N2E2_2341 at 2774.084 kb on + strand, within Pf6N2E2_2341 at 2774.085 kb on - strand, within Pf6N2E2_2341 at 2774.085 kb on - strand, within Pf6N2E2_2341 at 2774.098 kb on + strand, within Pf6N2E2_2341 at 2774.098 kb on + strand, within Pf6N2E2_2341 at 2774.099 kb on - strand, within Pf6N2E2_2341 at 2774.099 kb on - strand, within Pf6N2E2_2341 at 2774.265 kb on + strand, within Pf6N2E2_2341 at 2774.265 kb on + strand, within Pf6N2E2_2341 at 2774.265 kb on + strand, within Pf6N2E2_2341 at 2774.266 kb on - strand, within Pf6N2E2_2341 at 2774.325 kb on - strand, within Pf6N2E2_2341
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 2,771,695 + Pf6N2E2_2339 0.40 +0.7 2,771,695 + Pf6N2E2_2339 0.40 -0.5 2,771,695 + Pf6N2E2_2339 0.40 -2.0 2,771,722 + Pf6N2E2_2339 0.42 -1.2 2,771,776 + Pf6N2E2_2339 0.46 -0.4 2,771,863 + Pf6N2E2_2339 0.52 -0.5 2,771,864 - Pf6N2E2_2339 0.52 -1.5 2,771,864 - Pf6N2E2_2339 0.52 +0.1 2,771,864 - Pf6N2E2_2339 0.52 -1.8 2,771,864 - Pf6N2E2_2339 0.52 +0.6 2,771,864 - Pf6N2E2_2339 0.52 +1.3 2,771,950 + Pf6N2E2_2339 0.59 -1.9 2,771,950 + Pf6N2E2_2339 0.59 +0.4 2,771,951 - Pf6N2E2_2339 0.59 -1.4 2,772,131 + Pf6N2E2_2339 0.73 +0.6 2,772,131 + Pf6N2E2_2339 0.73 +0.9 2,772,131 + Pf6N2E2_2339 0.73 -0.2 2,772,196 + Pf6N2E2_2339 0.78 -0.5 2,772,196 + Pf6N2E2_2339 0.78 -0.1 2,772,196 + Pf6N2E2_2339 0.78 -0.0 2,772,196 + Pf6N2E2_2339 0.78 -0.2 2,772,197 - Pf6N2E2_2339 0.78 -0.1 2,772,197 - Pf6N2E2_2339 0.78 +0.2 2,772,197 - Pf6N2E2_2339 0.78 +1.0 2,772,197 - Pf6N2E2_2339 0.78 -0.5 2,772,197 - Pf6N2E2_2339 0.78 -1.3 2,772,247 + Pf6N2E2_2339 0.82 -1.1 2,772,343 + Pf6N2E2_2339 0.89 -0.7 2,772,344 - Pf6N2E2_2339 0.89 -0.6 2,772,344 - Pf6N2E2_2339 0.89 +0.4 2,772,451 + +0.2 2,772,451 + +0.6 2,772,451 + -0.2 2,772,452 - -1.7 2,772,452 - -0.4 2,772,452 - -0.5 2,772,463 - -0.1 2,772,731 + Pf6N2E2_2340 0.14 +0.4 2,772,853 + Pf6N2E2_2340 0.30 -2.3 2,773,208 + Pf6N2E2_2340 0.76 -0.0 2,773,301 + Pf6N2E2_2340 0.88 -2.1 2,773,302 - Pf6N2E2_2340 0.88 +0.5 2,773,309 + Pf6N2E2_2340 0.89 -1.2 2,773,309 + Pf6N2E2_2340 0.89 -0.0 2,773,309 + Pf6N2E2_2340 0.89 -1.7 2,773,310 - Pf6N2E2_2340 0.89 -1.3 2,773,435 + +0.5 2,773,436 - -0.1 2,773,436 - -0.8 2,773,464 - -0.5 2,773,488 + -1.1 2,773,488 + +0.1 2,773,541 - -0.1 2,773,574 - -0.5 2,773,744 + +0.3 2,773,745 - -0.4 2,773,745 - +0.7 2,773,746 + +0.7 2,773,746 + -0.5 2,773,749 + -0.5 2,773,975 + Pf6N2E2_2341 0.17 -1.7 2,774,061 + Pf6N2E2_2341 0.25 -0.9 2,774,061 + Pf6N2E2_2341 0.25 -0.7 2,774,061 + Pf6N2E2_2341 0.25 +1.4 2,774,082 + Pf6N2E2_2341 0.26 +0.1 2,774,082 + Pf6N2E2_2341 0.26 -1.2 2,774,082 + Pf6N2E2_2341 0.26 +0.5 2,774,083 - Pf6N2E2_2341 0.27 +0.8 2,774,083 - Pf6N2E2_2341 0.27 +0.6 2,774,083 - Pf6N2E2_2341 0.27 -1.2 2,774,083 - Pf6N2E2_2341 0.27 -2.0 2,774,084 + Pf6N2E2_2341 0.27 +0.3 2,774,085 - Pf6N2E2_2341 0.27 +0.2 2,774,085 - Pf6N2E2_2341 0.27 -1.0 2,774,098 + Pf6N2E2_2341 0.28 -0.8 2,774,098 + Pf6N2E2_2341 0.28 -1.2 2,774,099 - Pf6N2E2_2341 0.28 +0.8 2,774,099 - Pf6N2E2_2341 0.28 -1.0 2,774,265 + Pf6N2E2_2341 0.42 -0.1 2,774,265 + Pf6N2E2_2341 0.42 -0.9 2,774,265 + Pf6N2E2_2341 0.42 +0.1 2,774,266 - Pf6N2E2_2341 0.42 +0.8 2,774,325 - Pf6N2E2_2341 0.47 +0.1
Or see this region's nucleotide sequence