Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2216 and Pf6N2E2_2217 are separated by 161 nucleotides Pf6N2E2_2217 and Pf6N2E2_2218 are separated by 107 nucleotides Pf6N2E2_2218 and Pf6N2E2_2219 are separated by 93 nucleotides
Pf6N2E2_2216 - ATP-dependent protease La (EC 3.4.21.53) Type I, at 2,625,738 to 2,628,134
_2216
Pf6N2E2_2217 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 2,628,296 to 2,629,579
_2217
Pf6N2E2_2218 - ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92), at 2,629,687 to 2,630,328
_2218
Pf6N2E2_2219 - Cell division trigger factor (EC 5.2.1.8), at 2,630,422 to 2,631,732
_2219
Position (kb)
2628
2629
2630 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2628.180 kb on - strand at 2628.180 kb on - strand at 2628.180 kb on - strand at 2628.180 kb on - strand at 2628.180 kb on - strand at 2628.237 kb on - strand at 2628.298 kb on - strand at 2628.298 kb on - strand at 2628.298 kb on - strand at 2628.340 kb on - strand at 2628.340 kb on - strand at 2628.340 kb on - strand at 2628.344 kb on - strand at 2628.344 kb on - strand at 2628.344 kb on - strand at 2628.344 kb on - strand at 2628.344 kb on - strand at 2628.344 kb on - strand at 2628.344 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.346 kb on - strand at 2628.369 kb on - strand at 2628.369 kb on - strand at 2628.395 kb on - strand at 2628.424 kb on - strand at 2628.424 kb on - strand at 2628.441 kb on - strand, within Pf6N2E2_2217 at 2628.540 kb on - strand, within Pf6N2E2_2217 at 2628.558 kb on - strand, within Pf6N2E2_2217 at 2628.568 kb on - strand, within Pf6N2E2_2217 at 2628.568 kb on - strand, within Pf6N2E2_2217 at 2628.568 kb on - strand, within Pf6N2E2_2217 at 2628.568 kb on - strand, within Pf6N2E2_2217 at 2629.030 kb on - strand, within Pf6N2E2_2217 at 2629.030 kb on - strand, within Pf6N2E2_2217 at 2629.063 kb on - strand, within Pf6N2E2_2217 at 2629.063 kb on - strand, within Pf6N2E2_2217 at 2629.300 kb on - strand, within Pf6N2E2_2217 at 2629.300 kb on - strand, within Pf6N2E2_2217 at 2629.300 kb on - strand, within Pf6N2E2_2217 at 2629.348 kb on - strand, within Pf6N2E2_2217 at 2629.390 kb on + strand, within Pf6N2E2_2217 at 2629.536 kb on + strand at 2629.537 kb on - strand at 2629.676 kb on + strand at 2630.048 kb on + strand, within Pf6N2E2_2218 at 2630.093 kb on + strand, within Pf6N2E2_2218 at 2630.093 kb on + strand, within Pf6N2E2_2218 at 2630.093 kb on + strand, within Pf6N2E2_2218 at 2630.093 kb on + strand, within Pf6N2E2_2218 at 2630.093 kb on + strand, within Pf6N2E2_2218 at 2630.094 kb on - strand, within Pf6N2E2_2218 at 2630.094 kb on - strand, within Pf6N2E2_2218 at 2630.094 kb on - strand, within Pf6N2E2_2218 at 2630.094 kb on - strand, within Pf6N2E2_2218 at 2630.094 kb on - strand, within Pf6N2E2_2218 at 2630.094 kb on - strand, within Pf6N2E2_2218 at 2630.165 kb on + strand, within Pf6N2E2_2218 at 2630.219 kb on + strand, within Pf6N2E2_2218 at 2630.219 kb on + strand, within Pf6N2E2_2218 at 2630.220 kb on - strand, within Pf6N2E2_2218 at 2630.220 kb on - strand, within Pf6N2E2_2218 at 2630.349 kb on + strand at 2630.349 kb on + strand at 2630.350 kb on - strand at 2630.354 kb on - strand at 2630.354 kb on - strand at 2630.354 kb on - strand at 2630.354 kb on - strand at 2630.354 kb on - strand at 2630.365 kb on - strand at 2630.371 kb on - strand at 2630.393 kb on - strand at 2630.403 kb on - strand at 2630.466 kb on - strand at 2630.466 kb on - strand at 2630.509 kb on - strand at 2630.571 kb on - strand, within Pf6N2E2_2219
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 2,628,180 - -0.4 2,628,180 - -0.8 2,628,180 - +1.5 2,628,180 - +0.1 2,628,180 - -0.3 2,628,237 - +0.1 2,628,298 - -1.2 2,628,298 - +1.6 2,628,298 - -0.2 2,628,340 - -1.0 2,628,340 - -0.9 2,628,340 - -1.1 2,628,344 - -0.1 2,628,344 - +0.5 2,628,344 - -0.0 2,628,344 - +0.1 2,628,344 - +0.2 2,628,344 - -0.6 2,628,344 - -0.8 2,628,346 - -0.8 2,628,346 - -0.2 2,628,346 - -0.5 2,628,346 - +1.0 2,628,346 - +0.3 2,628,346 - -0.2 2,628,346 - -0.4 2,628,346 - -0.2 2,628,346 - -1.0 2,628,346 - -0.2 2,628,346 - -1.1 2,628,346 - +0.5 2,628,346 - -1.4 2,628,346 - -2.1 2,628,346 - +2.6 2,628,346 - -0.8 2,628,346 - -0.6 2,628,346 - -0.9 2,628,346 - +0.7 2,628,346 - +0.5 2,628,346 - +0.7 2,628,346 - -1.0 2,628,346 - -0.8 2,628,346 - -0.6 2,628,369 - -0.7 2,628,369 - +0.3 2,628,395 - -1.8 2,628,424 - +0.2 2,628,424 - -0.8 2,628,441 - Pf6N2E2_2217 0.11 -1.3 2,628,540 - Pf6N2E2_2217 0.19 -2.6 2,628,558 - Pf6N2E2_2217 0.20 -0.2 2,628,568 - Pf6N2E2_2217 0.21 -1.2 2,628,568 - Pf6N2E2_2217 0.21 -1.9 2,628,568 - Pf6N2E2_2217 0.21 -2.3 2,628,568 - Pf6N2E2_2217 0.21 -1.0 2,629,030 - Pf6N2E2_2217 0.57 -1.8 2,629,030 - Pf6N2E2_2217 0.57 -1.2 2,629,063 - Pf6N2E2_2217 0.60 -1.9 2,629,063 - Pf6N2E2_2217 0.60 -0.9 2,629,300 - Pf6N2E2_2217 0.78 -1.6 2,629,300 - Pf6N2E2_2217 0.78 -2.4 2,629,300 - Pf6N2E2_2217 0.78 -2.2 2,629,348 - Pf6N2E2_2217 0.82 -1.0 2,629,390 + Pf6N2E2_2217 0.85 -1.9 2,629,536 + -1.2 2,629,537 - -2.2 2,629,676 + +0.5 2,630,048 + Pf6N2E2_2218 0.56 +1.8 2,630,093 + Pf6N2E2_2218 0.63 +1.8 2,630,093 + Pf6N2E2_2218 0.63 +0.0 2,630,093 + Pf6N2E2_2218 0.63 +1.3 2,630,093 + Pf6N2E2_2218 0.63 -1.5 2,630,093 + Pf6N2E2_2218 0.63 -2.3 2,630,094 - Pf6N2E2_2218 0.63 +1.0 2,630,094 - Pf6N2E2_2218 0.63 +1.8 2,630,094 - Pf6N2E2_2218 0.63 +0.6 2,630,094 - Pf6N2E2_2218 0.63 -2.2 2,630,094 - Pf6N2E2_2218 0.63 +0.8 2,630,094 - Pf6N2E2_2218 0.63 +1.2 2,630,165 + Pf6N2E2_2218 0.74 -0.6 2,630,219 + Pf6N2E2_2218 0.83 +0.8 2,630,219 + Pf6N2E2_2218 0.83 -0.2 2,630,220 - Pf6N2E2_2218 0.83 -0.2 2,630,220 - Pf6N2E2_2218 0.83 +0.5 2,630,349 + +0.0 2,630,349 + -0.4 2,630,350 - -0.3 2,630,354 - -1.2 2,630,354 - +0.2 2,630,354 - +0.1 2,630,354 - -1.1 2,630,354 - -2.1 2,630,365 - -2.5 2,630,371 - -2.3 2,630,393 - +2.6 2,630,403 - +2.3 2,630,466 - +2.4 2,630,466 - +3.8 2,630,509 - +3.1 2,630,571 - Pf6N2E2_2219 0.11 +0.8
Or see this region's nucleotide sequence