Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2217

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2216 and Pf6N2E2_2217 are separated by 161 nucleotidesPf6N2E2_2217 and Pf6N2E2_2218 are separated by 107 nucleotidesPf6N2E2_2218 and Pf6N2E2_2219 are separated by 93 nucleotides Pf6N2E2_2216 - ATP-dependent protease La (EC 3.4.21.53) Type I, at 2,625,738 to 2,628,134 _2216 Pf6N2E2_2217 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 2,628,296 to 2,629,579 _2217 Pf6N2E2_2218 - ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92), at 2,629,687 to 2,630,328 _2218 Pf6N2E2_2219 - Cell division trigger factor (EC 5.2.1.8), at 2,630,422 to 2,631,732 _2219 Position (kb) 2628 2629 2630Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2628.180 kb on - strandat 2628.180 kb on - strandat 2628.180 kb on - strandat 2628.180 kb on - strandat 2628.180 kb on - strandat 2628.237 kb on - strandat 2628.298 kb on - strandat 2628.298 kb on - strandat 2628.298 kb on - strandat 2628.340 kb on - strandat 2628.340 kb on - strandat 2628.340 kb on - strandat 2628.344 kb on - strandat 2628.344 kb on - strandat 2628.344 kb on - strandat 2628.344 kb on - strandat 2628.344 kb on - strandat 2628.344 kb on - strandat 2628.344 kb on - strandat 2628.346 kb on - strandat 2628.346 kb on - strandat 2628.346 kb on - strandat 2628.346 kb on - strandat 2628.346 kb on - strandat 2628.346 kb on - strandat 2628.346 kb on - strandat 2628.346 kb on - strandat 2628.346 kb on - strandat 2628.346 kb on - strandat 2628.346 kb on - strandat 2628.346 kb on - strandat 2628.346 kb on - strandat 2628.346 kb on - strandat 2628.346 kb on - strandat 2628.346 kb on - strandat 2628.346 kb on - strandat 2628.346 kb on - strandat 2628.346 kb on - strandat 2628.346 kb on - strandat 2628.346 kb on - strandat 2628.346 kb on - strandat 2628.346 kb on - strandat 2628.346 kb on - strandat 2628.369 kb on - strandat 2628.369 kb on - strandat 2628.395 kb on - strandat 2628.424 kb on - strandat 2628.424 kb on - strandat 2628.441 kb on - strand, within Pf6N2E2_2217at 2628.540 kb on - strand, within Pf6N2E2_2217at 2628.558 kb on - strand, within Pf6N2E2_2217at 2628.568 kb on - strand, within Pf6N2E2_2217at 2628.568 kb on - strand, within Pf6N2E2_2217at 2628.568 kb on - strand, within Pf6N2E2_2217at 2628.568 kb on - strand, within Pf6N2E2_2217at 2629.030 kb on - strand, within Pf6N2E2_2217at 2629.030 kb on - strand, within Pf6N2E2_2217at 2629.063 kb on - strand, within Pf6N2E2_2217at 2629.063 kb on - strand, within Pf6N2E2_2217at 2629.300 kb on - strand, within Pf6N2E2_2217at 2629.300 kb on - strand, within Pf6N2E2_2217at 2629.300 kb on - strand, within Pf6N2E2_2217at 2629.348 kb on - strand, within Pf6N2E2_2217at 2629.390 kb on + strand, within Pf6N2E2_2217at 2629.536 kb on + strandat 2629.537 kb on - strandat 2629.676 kb on + strandat 2630.048 kb on + strand, within Pf6N2E2_2218at 2630.093 kb on + strand, within Pf6N2E2_2218at 2630.093 kb on + strand, within Pf6N2E2_2218at 2630.093 kb on + strand, within Pf6N2E2_2218at 2630.093 kb on + strand, within Pf6N2E2_2218at 2630.093 kb on + strand, within Pf6N2E2_2218at 2630.094 kb on - strand, within Pf6N2E2_2218at 2630.094 kb on - strand, within Pf6N2E2_2218at 2630.094 kb on - strand, within Pf6N2E2_2218at 2630.094 kb on - strand, within Pf6N2E2_2218at 2630.094 kb on - strand, within Pf6N2E2_2218at 2630.094 kb on - strand, within Pf6N2E2_2218at 2630.165 kb on + strand, within Pf6N2E2_2218at 2630.219 kb on + strand, within Pf6N2E2_2218at 2630.219 kb on + strand, within Pf6N2E2_2218at 2630.220 kb on - strand, within Pf6N2E2_2218at 2630.220 kb on - strand, within Pf6N2E2_2218at 2630.349 kb on + strandat 2630.349 kb on + strandat 2630.350 kb on - strandat 2630.354 kb on - strandat 2630.354 kb on - strandat 2630.354 kb on - strandat 2630.354 kb on - strandat 2630.354 kb on - strandat 2630.365 kb on - strandat 2630.371 kb on - strandat 2630.393 kb on - strandat 2630.403 kb on - strandat 2630.466 kb on - strandat 2630.466 kb on - strandat 2630.509 kb on - strandat 2630.571 kb on - strand, within Pf6N2E2_2219

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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2,628,180 - -0.4
2,628,180 - -0.8
2,628,180 - +1.5
2,628,180 - +0.1
2,628,180 - -0.3
2,628,237 - +0.1
2,628,298 - -1.2
2,628,298 - +1.6
2,628,298 - -0.2
2,628,340 - -1.0
2,628,340 - -0.9
2,628,340 - -1.1
2,628,344 - -0.1
2,628,344 - +0.5
2,628,344 - -0.0
2,628,344 - +0.1
2,628,344 - +0.2
2,628,344 - -0.6
2,628,344 - -0.8
2,628,346 - -0.8
2,628,346 - -0.2
2,628,346 - -0.5
2,628,346 - +1.0
2,628,346 - +0.3
2,628,346 - -0.2
2,628,346 - -0.4
2,628,346 - -0.2
2,628,346 - -1.0
2,628,346 - -0.2
2,628,346 - -1.1
2,628,346 - +0.5
2,628,346 - -1.4
2,628,346 - -2.1
2,628,346 - +2.6
2,628,346 - -0.8
2,628,346 - -0.6
2,628,346 - -0.9
2,628,346 - +0.7
2,628,346 - +0.5
2,628,346 - +0.7
2,628,346 - -1.0
2,628,346 - -0.8
2,628,346 - -0.6
2,628,369 - -0.7
2,628,369 - +0.3
2,628,395 - -1.8
2,628,424 - +0.2
2,628,424 - -0.8
2,628,441 - Pf6N2E2_2217 0.11 -1.3
2,628,540 - Pf6N2E2_2217 0.19 -2.6
2,628,558 - Pf6N2E2_2217 0.20 -0.2
2,628,568 - Pf6N2E2_2217 0.21 -1.2
2,628,568 - Pf6N2E2_2217 0.21 -1.9
2,628,568 - Pf6N2E2_2217 0.21 -2.3
2,628,568 - Pf6N2E2_2217 0.21 -1.0
2,629,030 - Pf6N2E2_2217 0.57 -1.8
2,629,030 - Pf6N2E2_2217 0.57 -1.2
2,629,063 - Pf6N2E2_2217 0.60 -1.9
2,629,063 - Pf6N2E2_2217 0.60 -0.9
2,629,300 - Pf6N2E2_2217 0.78 -1.6
2,629,300 - Pf6N2E2_2217 0.78 -2.4
2,629,300 - Pf6N2E2_2217 0.78 -2.2
2,629,348 - Pf6N2E2_2217 0.82 -1.0
2,629,390 + Pf6N2E2_2217 0.85 -1.9
2,629,536 + -1.2
2,629,537 - -2.2
2,629,676 + +0.5
2,630,048 + Pf6N2E2_2218 0.56 +1.8
2,630,093 + Pf6N2E2_2218 0.63 +1.8
2,630,093 + Pf6N2E2_2218 0.63 +0.0
2,630,093 + Pf6N2E2_2218 0.63 +1.3
2,630,093 + Pf6N2E2_2218 0.63 -1.5
2,630,093 + Pf6N2E2_2218 0.63 -2.3
2,630,094 - Pf6N2E2_2218 0.63 +1.0
2,630,094 - Pf6N2E2_2218 0.63 +1.8
2,630,094 - Pf6N2E2_2218 0.63 +0.6
2,630,094 - Pf6N2E2_2218 0.63 -2.2
2,630,094 - Pf6N2E2_2218 0.63 +0.8
2,630,094 - Pf6N2E2_2218 0.63 +1.2
2,630,165 + Pf6N2E2_2218 0.74 -0.6
2,630,219 + Pf6N2E2_2218 0.83 +0.8
2,630,219 + Pf6N2E2_2218 0.83 -0.2
2,630,220 - Pf6N2E2_2218 0.83 -0.2
2,630,220 - Pf6N2E2_2218 0.83 +0.5
2,630,349 + +0.0
2,630,349 + -0.4
2,630,350 - -0.3
2,630,354 - -1.2
2,630,354 - +0.2
2,630,354 - +0.1
2,630,354 - -1.1
2,630,354 - -2.1
2,630,365 - -2.5
2,630,371 - -2.3
2,630,393 - +2.6
2,630,403 - +2.3
2,630,466 - +2.4
2,630,466 - +3.8
2,630,509 - +3.1
2,630,571 - Pf6N2E2_2219 0.11 +0.8

Or see this region's nucleotide sequence