Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2118 and Pf6N2E2_2119 are separated by 12 nucleotides Pf6N2E2_2119 and Pf6N2E2_2120 overlap by 40 nucleotides
Pf6N2E2_2118 - Trehalose synthase (EC 5.4.99.16), at 2,517,595 to 2,520,939
_2118
Pf6N2E2_2119 - hypothetical protein, at 2,520,952 to 2,521,203
_2119
Pf6N2E2_2120 - Alpha-amylase (EC 3.2.1.1), at 2,521,164 to 2,523,161
_2120
Position (kb)
2520
2521
2522 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2520.065 kb on + strand, within Pf6N2E2_2118 at 2520.065 kb on + strand, within Pf6N2E2_2118 at 2520.065 kb on + strand, within Pf6N2E2_2118 at 2520.065 kb on + strand, within Pf6N2E2_2118 at 2520.065 kb on + strand, within Pf6N2E2_2118 at 2520.065 kb on + strand, within Pf6N2E2_2118 at 2520.065 kb on + strand, within Pf6N2E2_2118 at 2520.065 kb on + strand, within Pf6N2E2_2118 at 2520.065 kb on + strand, within Pf6N2E2_2118 at 2520.066 kb on - strand, within Pf6N2E2_2118 at 2520.066 kb on - strand, within Pf6N2E2_2118 at 2520.066 kb on - strand, within Pf6N2E2_2118 at 2520.066 kb on - strand, within Pf6N2E2_2118 at 2520.066 kb on - strand, within Pf6N2E2_2118 at 2520.146 kb on + strand, within Pf6N2E2_2118 at 2520.146 kb on + strand, within Pf6N2E2_2118 at 2520.146 kb on + strand, within Pf6N2E2_2118 at 2520.203 kb on + strand, within Pf6N2E2_2118 at 2520.293 kb on + strand, within Pf6N2E2_2118 at 2520.294 kb on - strand, within Pf6N2E2_2118 at 2520.410 kb on + strand, within Pf6N2E2_2118 at 2520.411 kb on - strand, within Pf6N2E2_2118 at 2520.411 kb on - strand, within Pf6N2E2_2118 at 2520.411 kb on - strand, within Pf6N2E2_2118 at 2520.428 kb on + strand, within Pf6N2E2_2118 at 2520.500 kb on + strand, within Pf6N2E2_2118 at 2520.500 kb on + strand, within Pf6N2E2_2118 at 2520.527 kb on + strand, within Pf6N2E2_2118 at 2520.527 kb on + strand, within Pf6N2E2_2118 at 2520.528 kb on - strand, within Pf6N2E2_2118 at 2520.675 kb on + strand at 2520.746 kb on + strand at 2520.792 kb on - strand at 2520.792 kb on - strand at 2520.860 kb on - strand at 2520.872 kb on + strand at 2520.991 kb on + strand, within Pf6N2E2_2119 at 2520.991 kb on + strand, within Pf6N2E2_2119 at 2520.991 kb on + strand, within Pf6N2E2_2119 at 2520.991 kb on + strand, within Pf6N2E2_2119 at 2520.992 kb on - strand, within Pf6N2E2_2119 at 2520.992 kb on - strand, within Pf6N2E2_2119 at 2520.992 kb on - strand, within Pf6N2E2_2119 at 2520.992 kb on - strand, within Pf6N2E2_2119 at 2521.202 kb on - strand at 2521.228 kb on + strand at 2521.229 kb on - strand at 2521.435 kb on + strand, within Pf6N2E2_2120 at 2521.435 kb on + strand, within Pf6N2E2_2120 at 2521.435 kb on + strand, within Pf6N2E2_2120 at 2521.435 kb on + strand, within Pf6N2E2_2120 at 2521.457 kb on + strand, within Pf6N2E2_2120 at 2521.458 kb on - strand, within Pf6N2E2_2120 at 2521.484 kb on + strand, within Pf6N2E2_2120 at 2521.484 kb on + strand, within Pf6N2E2_2120 at 2521.570 kb on + strand, within Pf6N2E2_2120 at 2521.571 kb on - strand, within Pf6N2E2_2120 at 2521.571 kb on - strand, within Pf6N2E2_2120 at 2521.621 kb on + strand, within Pf6N2E2_2120 at 2521.621 kb on + strand, within Pf6N2E2_2120 at 2521.621 kb on + strand, within Pf6N2E2_2120 at 2521.621 kb on + strand, within Pf6N2E2_2120 at 2521.621 kb on + strand, within Pf6N2E2_2120 at 2521.621 kb on + strand, within Pf6N2E2_2120 at 2521.621 kb on + strand, within Pf6N2E2_2120 at 2521.622 kb on - strand, within Pf6N2E2_2120 at 2521.622 kb on - strand, within Pf6N2E2_2120 at 2521.744 kb on + strand, within Pf6N2E2_2120 at 2521.784 kb on - strand, within Pf6N2E2_2120 at 2521.823 kb on - strand, within Pf6N2E2_2120 at 2521.823 kb on - strand, within Pf6N2E2_2120 at 2521.823 kb on - strand, within Pf6N2E2_2120 at 2521.828 kb on + strand, within Pf6N2E2_2120 at 2521.828 kb on + strand, within Pf6N2E2_2120 at 2521.828 kb on + strand, within Pf6N2E2_2120 at 2521.828 kb on + strand, within Pf6N2E2_2120 at 2521.828 kb on + strand, within Pf6N2E2_2120 at 2521.829 kb on - strand, within Pf6N2E2_2120 at 2521.829 kb on - strand, within Pf6N2E2_2120 at 2521.829 kb on - strand, within Pf6N2E2_2120 at 2521.829 kb on - strand, within Pf6N2E2_2120 at 2521.829 kb on - strand, within Pf6N2E2_2120 at 2521.913 kb on - strand, within Pf6N2E2_2120 at 2521.987 kb on - strand, within Pf6N2E2_2120 at 2522.092 kb on + strand, within Pf6N2E2_2120 at 2522.092 kb on + strand, within Pf6N2E2_2120 at 2522.093 kb on - strand, within Pf6N2E2_2120 at 2522.116 kb on + strand, within Pf6N2E2_2120 at 2522.116 kb on + strand, within Pf6N2E2_2120
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 2,520,065 + Pf6N2E2_2118 0.74 -0.2 2,520,065 + Pf6N2E2_2118 0.74 +0.3 2,520,065 + Pf6N2E2_2118 0.74 +0.3 2,520,065 + Pf6N2E2_2118 0.74 +1.8 2,520,065 + Pf6N2E2_2118 0.74 -0.2 2,520,065 + Pf6N2E2_2118 0.74 +1.3 2,520,065 + Pf6N2E2_2118 0.74 -1.5 2,520,065 + Pf6N2E2_2118 0.74 -0.0 2,520,065 + Pf6N2E2_2118 0.74 -0.2 2,520,066 - Pf6N2E2_2118 0.74 -2.0 2,520,066 - Pf6N2E2_2118 0.74 -0.2 2,520,066 - Pf6N2E2_2118 0.74 -2.2 2,520,066 - Pf6N2E2_2118 0.74 -0.9 2,520,066 - Pf6N2E2_2118 0.74 -0.6 2,520,146 + Pf6N2E2_2118 0.76 -0.4 2,520,146 + Pf6N2E2_2118 0.76 +2.0 2,520,146 + Pf6N2E2_2118 0.76 -0.7 2,520,203 + Pf6N2E2_2118 0.78 -0.8 2,520,293 + Pf6N2E2_2118 0.81 -0.5 2,520,294 - Pf6N2E2_2118 0.81 +0.0 2,520,410 + Pf6N2E2_2118 0.84 -2.5 2,520,411 - Pf6N2E2_2118 0.84 +1.8 2,520,411 - Pf6N2E2_2118 0.84 -0.6 2,520,411 - Pf6N2E2_2118 0.84 -1.4 2,520,428 + Pf6N2E2_2118 0.85 +1.4 2,520,500 + Pf6N2E2_2118 0.87 +0.7 2,520,500 + Pf6N2E2_2118 0.87 +0.4 2,520,527 + Pf6N2E2_2118 0.88 +1.1 2,520,527 + Pf6N2E2_2118 0.88 +0.5 2,520,528 - Pf6N2E2_2118 0.88 -1.7 2,520,675 + -1.5 2,520,746 + -1.6 2,520,792 - -0.9 2,520,792 - -0.2 2,520,860 - +0.5 2,520,872 + +0.3 2,520,991 + Pf6N2E2_2119 0.15 -0.6 2,520,991 + Pf6N2E2_2119 0.15 +2.3 2,520,991 + Pf6N2E2_2119 0.15 +1.8 2,520,991 + Pf6N2E2_2119 0.15 -0.0 2,520,992 - Pf6N2E2_2119 0.16 -1.8 2,520,992 - Pf6N2E2_2119 0.16 -1.0 2,520,992 - Pf6N2E2_2119 0.16 -1.7 2,520,992 - Pf6N2E2_2119 0.16 -1.0 2,521,202 - -0.5 2,521,228 + +1.0 2,521,229 - -3.0 2,521,435 + Pf6N2E2_2120 0.14 +0.0 2,521,435 + Pf6N2E2_2120 0.14 +0.8 2,521,435 + Pf6N2E2_2120 0.14 +1.1 2,521,435 + Pf6N2E2_2120 0.14 +0.7 2,521,457 + Pf6N2E2_2120 0.15 +1.0 2,521,458 - Pf6N2E2_2120 0.15 -0.9 2,521,484 + Pf6N2E2_2120 0.16 +0.4 2,521,484 + Pf6N2E2_2120 0.16 -1.3 2,521,570 + Pf6N2E2_2120 0.20 +0.1 2,521,571 - Pf6N2E2_2120 0.20 -1.7 2,521,571 - Pf6N2E2_2120 0.20 +0.4 2,521,621 + Pf6N2E2_2120 0.23 +0.8 2,521,621 + Pf6N2E2_2120 0.23 -0.2 2,521,621 + Pf6N2E2_2120 0.23 +1.4 2,521,621 + Pf6N2E2_2120 0.23 +0.8 2,521,621 + Pf6N2E2_2120 0.23 +0.9 2,521,621 + Pf6N2E2_2120 0.23 +0.6 2,521,621 + Pf6N2E2_2120 0.23 -0.1 2,521,622 - Pf6N2E2_2120 0.23 -0.1 2,521,622 - Pf6N2E2_2120 0.23 -1.2 2,521,744 + Pf6N2E2_2120 0.29 +0.8 2,521,784 - Pf6N2E2_2120 0.31 +0.9 2,521,823 - Pf6N2E2_2120 0.33 -0.2 2,521,823 - Pf6N2E2_2120 0.33 -1.5 2,521,823 - Pf6N2E2_2120 0.33 -2.0 2,521,828 + Pf6N2E2_2120 0.33 +0.8 2,521,828 + Pf6N2E2_2120 0.33 +1.3 2,521,828 + Pf6N2E2_2120 0.33 -0.5 2,521,828 + Pf6N2E2_2120 0.33 +0.8 2,521,828 + Pf6N2E2_2120 0.33 +0.2 2,521,829 - Pf6N2E2_2120 0.33 +0.5 2,521,829 - Pf6N2E2_2120 0.33 -0.4 2,521,829 - Pf6N2E2_2120 0.33 +0.5 2,521,829 - Pf6N2E2_2120 0.33 -0.2 2,521,829 - Pf6N2E2_2120 0.33 +0.4 2,521,913 - Pf6N2E2_2120 0.37 +1.2 2,521,987 - Pf6N2E2_2120 0.41 -2.0 2,522,092 + Pf6N2E2_2120 0.46 -0.2 2,522,092 + Pf6N2E2_2120 0.46 +1.3 2,522,093 - Pf6N2E2_2120 0.46 +0.3 2,522,116 + Pf6N2E2_2120 0.48 +1.1 2,522,116 + Pf6N2E2_2120 0.48 +0.4
Or see this region's nucleotide sequence