Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2119

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2118 and Pf6N2E2_2119 are separated by 12 nucleotidesPf6N2E2_2119 and Pf6N2E2_2120 overlap by 40 nucleotides Pf6N2E2_2118 - Trehalose synthase (EC 5.4.99.16), at 2,517,595 to 2,520,939 _2118 Pf6N2E2_2119 - hypothetical protein, at 2,520,952 to 2,521,203 _2119 Pf6N2E2_2120 - Alpha-amylase (EC 3.2.1.1), at 2,521,164 to 2,523,161 _2120 Position (kb) 2520 2521 2522Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2520.065 kb on + strand, within Pf6N2E2_2118at 2520.065 kb on + strand, within Pf6N2E2_2118at 2520.065 kb on + strand, within Pf6N2E2_2118at 2520.065 kb on + strand, within Pf6N2E2_2118at 2520.065 kb on + strand, within Pf6N2E2_2118at 2520.065 kb on + strand, within Pf6N2E2_2118at 2520.065 kb on + strand, within Pf6N2E2_2118at 2520.065 kb on + strand, within Pf6N2E2_2118at 2520.065 kb on + strand, within Pf6N2E2_2118at 2520.066 kb on - strand, within Pf6N2E2_2118at 2520.066 kb on - strand, within Pf6N2E2_2118at 2520.066 kb on - strand, within Pf6N2E2_2118at 2520.066 kb on - strand, within Pf6N2E2_2118at 2520.066 kb on - strand, within Pf6N2E2_2118at 2520.146 kb on + strand, within Pf6N2E2_2118at 2520.146 kb on + strand, within Pf6N2E2_2118at 2520.146 kb on + strand, within Pf6N2E2_2118at 2520.203 kb on + strand, within Pf6N2E2_2118at 2520.293 kb on + strand, within Pf6N2E2_2118at 2520.294 kb on - strand, within Pf6N2E2_2118at 2520.410 kb on + strand, within Pf6N2E2_2118at 2520.411 kb on - strand, within Pf6N2E2_2118at 2520.411 kb on - strand, within Pf6N2E2_2118at 2520.411 kb on - strand, within Pf6N2E2_2118at 2520.428 kb on + strand, within Pf6N2E2_2118at 2520.500 kb on + strand, within Pf6N2E2_2118at 2520.500 kb on + strand, within Pf6N2E2_2118at 2520.527 kb on + strand, within Pf6N2E2_2118at 2520.527 kb on + strand, within Pf6N2E2_2118at 2520.528 kb on - strand, within Pf6N2E2_2118at 2520.675 kb on + strandat 2520.746 kb on + strandat 2520.792 kb on - strandat 2520.792 kb on - strandat 2520.860 kb on - strandat 2520.872 kb on + strandat 2520.991 kb on + strand, within Pf6N2E2_2119at 2520.991 kb on + strand, within Pf6N2E2_2119at 2520.991 kb on + strand, within Pf6N2E2_2119at 2520.991 kb on + strand, within Pf6N2E2_2119at 2520.992 kb on - strand, within Pf6N2E2_2119at 2520.992 kb on - strand, within Pf6N2E2_2119at 2520.992 kb on - strand, within Pf6N2E2_2119at 2520.992 kb on - strand, within Pf6N2E2_2119at 2521.202 kb on - strandat 2521.228 kb on + strandat 2521.229 kb on - strandat 2521.435 kb on + strand, within Pf6N2E2_2120at 2521.435 kb on + strand, within Pf6N2E2_2120at 2521.435 kb on + strand, within Pf6N2E2_2120at 2521.435 kb on + strand, within Pf6N2E2_2120at 2521.457 kb on + strand, within Pf6N2E2_2120at 2521.458 kb on - strand, within Pf6N2E2_2120at 2521.484 kb on + strand, within Pf6N2E2_2120at 2521.484 kb on + strand, within Pf6N2E2_2120at 2521.570 kb on + strand, within Pf6N2E2_2120at 2521.571 kb on - strand, within Pf6N2E2_2120at 2521.571 kb on - strand, within Pf6N2E2_2120at 2521.621 kb on + strand, within Pf6N2E2_2120at 2521.621 kb on + strand, within Pf6N2E2_2120at 2521.621 kb on + strand, within Pf6N2E2_2120at 2521.621 kb on + strand, within Pf6N2E2_2120at 2521.621 kb on + strand, within Pf6N2E2_2120at 2521.621 kb on + strand, within Pf6N2E2_2120at 2521.621 kb on + strand, within Pf6N2E2_2120at 2521.622 kb on - strand, within Pf6N2E2_2120at 2521.622 kb on - strand, within Pf6N2E2_2120at 2521.744 kb on + strand, within Pf6N2E2_2120at 2521.784 kb on - strand, within Pf6N2E2_2120at 2521.823 kb on - strand, within Pf6N2E2_2120at 2521.823 kb on - strand, within Pf6N2E2_2120at 2521.823 kb on - strand, within Pf6N2E2_2120at 2521.828 kb on + strand, within Pf6N2E2_2120at 2521.828 kb on + strand, within Pf6N2E2_2120at 2521.828 kb on + strand, within Pf6N2E2_2120at 2521.828 kb on + strand, within Pf6N2E2_2120at 2521.828 kb on + strand, within Pf6N2E2_2120at 2521.829 kb on - strand, within Pf6N2E2_2120at 2521.829 kb on - strand, within Pf6N2E2_2120at 2521.829 kb on - strand, within Pf6N2E2_2120at 2521.829 kb on - strand, within Pf6N2E2_2120at 2521.829 kb on - strand, within Pf6N2E2_2120at 2521.913 kb on - strand, within Pf6N2E2_2120at 2521.987 kb on - strand, within Pf6N2E2_2120at 2522.092 kb on + strand, within Pf6N2E2_2120at 2522.092 kb on + strand, within Pf6N2E2_2120at 2522.093 kb on - strand, within Pf6N2E2_2120at 2522.116 kb on + strand, within Pf6N2E2_2120at 2522.116 kb on + strand, within Pf6N2E2_2120

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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2,520,065 + Pf6N2E2_2118 0.74 -0.2
2,520,065 + Pf6N2E2_2118 0.74 +0.3
2,520,065 + Pf6N2E2_2118 0.74 +0.3
2,520,065 + Pf6N2E2_2118 0.74 +1.8
2,520,065 + Pf6N2E2_2118 0.74 -0.2
2,520,065 + Pf6N2E2_2118 0.74 +1.3
2,520,065 + Pf6N2E2_2118 0.74 -1.5
2,520,065 + Pf6N2E2_2118 0.74 -0.0
2,520,065 + Pf6N2E2_2118 0.74 -0.2
2,520,066 - Pf6N2E2_2118 0.74 -2.0
2,520,066 - Pf6N2E2_2118 0.74 -0.2
2,520,066 - Pf6N2E2_2118 0.74 -2.2
2,520,066 - Pf6N2E2_2118 0.74 -0.9
2,520,066 - Pf6N2E2_2118 0.74 -0.6
2,520,146 + Pf6N2E2_2118 0.76 -0.4
2,520,146 + Pf6N2E2_2118 0.76 +2.0
2,520,146 + Pf6N2E2_2118 0.76 -0.7
2,520,203 + Pf6N2E2_2118 0.78 -0.8
2,520,293 + Pf6N2E2_2118 0.81 -0.5
2,520,294 - Pf6N2E2_2118 0.81 +0.0
2,520,410 + Pf6N2E2_2118 0.84 -2.5
2,520,411 - Pf6N2E2_2118 0.84 +1.8
2,520,411 - Pf6N2E2_2118 0.84 -0.6
2,520,411 - Pf6N2E2_2118 0.84 -1.4
2,520,428 + Pf6N2E2_2118 0.85 +1.4
2,520,500 + Pf6N2E2_2118 0.87 +0.7
2,520,500 + Pf6N2E2_2118 0.87 +0.4
2,520,527 + Pf6N2E2_2118 0.88 +1.1
2,520,527 + Pf6N2E2_2118 0.88 +0.5
2,520,528 - Pf6N2E2_2118 0.88 -1.7
2,520,675 + -1.5
2,520,746 + -1.6
2,520,792 - -0.9
2,520,792 - -0.2
2,520,860 - +0.5
2,520,872 + +0.3
2,520,991 + Pf6N2E2_2119 0.15 -0.6
2,520,991 + Pf6N2E2_2119 0.15 +2.3
2,520,991 + Pf6N2E2_2119 0.15 +1.8
2,520,991 + Pf6N2E2_2119 0.15 -0.0
2,520,992 - Pf6N2E2_2119 0.16 -1.8
2,520,992 - Pf6N2E2_2119 0.16 -1.0
2,520,992 - Pf6N2E2_2119 0.16 -1.7
2,520,992 - Pf6N2E2_2119 0.16 -1.0
2,521,202 - -0.5
2,521,228 + +1.0
2,521,229 - -3.0
2,521,435 + Pf6N2E2_2120 0.14 +0.0
2,521,435 + Pf6N2E2_2120 0.14 +0.8
2,521,435 + Pf6N2E2_2120 0.14 +1.1
2,521,435 + Pf6N2E2_2120 0.14 +0.7
2,521,457 + Pf6N2E2_2120 0.15 +1.0
2,521,458 - Pf6N2E2_2120 0.15 -0.9
2,521,484 + Pf6N2E2_2120 0.16 +0.4
2,521,484 + Pf6N2E2_2120 0.16 -1.3
2,521,570 + Pf6N2E2_2120 0.20 +0.1
2,521,571 - Pf6N2E2_2120 0.20 -1.7
2,521,571 - Pf6N2E2_2120 0.20 +0.4
2,521,621 + Pf6N2E2_2120 0.23 +0.8
2,521,621 + Pf6N2E2_2120 0.23 -0.2
2,521,621 + Pf6N2E2_2120 0.23 +1.4
2,521,621 + Pf6N2E2_2120 0.23 +0.8
2,521,621 + Pf6N2E2_2120 0.23 +0.9
2,521,621 + Pf6N2E2_2120 0.23 +0.6
2,521,621 + Pf6N2E2_2120 0.23 -0.1
2,521,622 - Pf6N2E2_2120 0.23 -0.1
2,521,622 - Pf6N2E2_2120 0.23 -1.2
2,521,744 + Pf6N2E2_2120 0.29 +0.8
2,521,784 - Pf6N2E2_2120 0.31 +0.9
2,521,823 - Pf6N2E2_2120 0.33 -0.2
2,521,823 - Pf6N2E2_2120 0.33 -1.5
2,521,823 - Pf6N2E2_2120 0.33 -2.0
2,521,828 + Pf6N2E2_2120 0.33 +0.8
2,521,828 + Pf6N2E2_2120 0.33 +1.3
2,521,828 + Pf6N2E2_2120 0.33 -0.5
2,521,828 + Pf6N2E2_2120 0.33 +0.8
2,521,828 + Pf6N2E2_2120 0.33 +0.2
2,521,829 - Pf6N2E2_2120 0.33 +0.5
2,521,829 - Pf6N2E2_2120 0.33 -0.4
2,521,829 - Pf6N2E2_2120 0.33 +0.5
2,521,829 - Pf6N2E2_2120 0.33 -0.2
2,521,829 - Pf6N2E2_2120 0.33 +0.4
2,521,913 - Pf6N2E2_2120 0.37 +1.2
2,521,987 - Pf6N2E2_2120 0.41 -2.0
2,522,092 + Pf6N2E2_2120 0.46 -0.2
2,522,092 + Pf6N2E2_2120 0.46 +1.3
2,522,093 - Pf6N2E2_2120 0.46 +0.3
2,522,116 + Pf6N2E2_2120 0.48 +1.1
2,522,116 + Pf6N2E2_2120 0.48 +0.4

Or see this region's nucleotide sequence