Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2051 and Pf6N2E2_2052 are separated by 9 nucleotides Pf6N2E2_2052 and Pf6N2E2_2053 are separated by 54 nucleotides Pf6N2E2_2053 and Pf6N2E2_2054 are separated by 321 nucleotides Pf6N2E2_2054 and Pf6N2E2_2055 are separated by 78 nucleotides
Pf6N2E2_2051 - ABC transporter for D-Glucosamine Hydrochloride, permease component 1 (from data) , at 2,442,374 to 2,443,036
_2051
Pf6N2E2_2052 - ABC transporter for D-Glucosamine Hydrochloride, permease component 2 (from data) , at 2,443,046 to 2,443,708
_2052
Pf6N2E2_2053 - ABC transporter for D-Glucosamine, periplasmic substrate-binding component (from data) , at 2,443,763 to 2,444,611
_2053
Pf6N2E2_2054 - hypothetical protein, at 2,444,933 to 2,445,274
_2054
Pf6N2E2_2055 - StbE replicon stabilization toxin, at 2,445,353 to 2,445,634
_2055
Position (kb)
2443
2444
2445 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2442.801 kb on + strand, within Pf6N2E2_2051 at 2442.801 kb on + strand, within Pf6N2E2_2051 at 2442.801 kb on + strand, within Pf6N2E2_2051 at 2442.801 kb on + strand, within Pf6N2E2_2051 at 2442.801 kb on + strand, within Pf6N2E2_2051 at 2442.801 kb on + strand, within Pf6N2E2_2051 at 2442.801 kb on + strand, within Pf6N2E2_2051 at 2442.802 kb on - strand, within Pf6N2E2_2051 at 2442.802 kb on - strand, within Pf6N2E2_2051 at 2442.802 kb on - strand, within Pf6N2E2_2051 at 2442.802 kb on - strand, within Pf6N2E2_2051 at 2442.802 kb on - strand, within Pf6N2E2_2051 at 2442.855 kb on + strand, within Pf6N2E2_2051 at 2442.855 kb on + strand, within Pf6N2E2_2051 at 2442.855 kb on + strand, within Pf6N2E2_2051 at 2442.856 kb on - strand, within Pf6N2E2_2051 at 2442.856 kb on - strand, within Pf6N2E2_2051 at 2442.891 kb on + strand, within Pf6N2E2_2051 at 2442.891 kb on + strand, within Pf6N2E2_2051 at 2442.892 kb on - strand, within Pf6N2E2_2051 at 2443.004 kb on + strand at 2443.032 kb on + strand at 2443.032 kb on + strand at 2443.033 kb on - strand at 2443.033 kb on - strand at 2443.033 kb on - strand at 2443.101 kb on + strand at 2443.102 kb on - strand at 2443.102 kb on - strand at 2443.116 kb on + strand, within Pf6N2E2_2052 at 2443.116 kb on + strand, within Pf6N2E2_2052 at 2443.116 kb on + strand, within Pf6N2E2_2052 at 2443.117 kb on - strand, within Pf6N2E2_2052 at 2443.117 kb on - strand, within Pf6N2E2_2052 at 2443.117 kb on - strand, within Pf6N2E2_2052 at 2443.182 kb on + strand, within Pf6N2E2_2052 at 2443.185 kb on + strand, within Pf6N2E2_2052 at 2443.185 kb on + strand, within Pf6N2E2_2052 at 2443.186 kb on - strand, within Pf6N2E2_2052 at 2443.186 kb on - strand, within Pf6N2E2_2052 at 2443.186 kb on - strand, within Pf6N2E2_2052 at 2443.268 kb on + strand, within Pf6N2E2_2052 at 2443.269 kb on - strand, within Pf6N2E2_2052 at 2443.269 kb on - strand, within Pf6N2E2_2052 at 2443.300 kb on - strand, within Pf6N2E2_2052 at 2443.399 kb on - strand, within Pf6N2E2_2052 at 2443.399 kb on - strand, within Pf6N2E2_2052 at 2443.399 kb on - strand, within Pf6N2E2_2052 at 2443.479 kb on + strand, within Pf6N2E2_2052 at 2443.510 kb on + strand, within Pf6N2E2_2052 at 2443.511 kb on - strand, within Pf6N2E2_2052 at 2443.531 kb on - strand, within Pf6N2E2_2052 at 2443.531 kb on - strand, within Pf6N2E2_2052 at 2443.839 kb on + strand at 2443.839 kb on + strand at 2443.839 kb on + strand at 2443.839 kb on + strand at 2443.839 kb on + strand at 2443.839 kb on + strand at 2443.839 kb on + strand at 2443.839 kb on + strand at 2443.840 kb on - strand at 2443.840 kb on - strand at 2443.840 kb on - strand at 2443.840 kb on - strand at 2443.840 kb on - strand at 2443.879 kb on + strand, within Pf6N2E2_2053 at 2443.879 kb on + strand, within Pf6N2E2_2053 at 2443.879 kb on + strand, within Pf6N2E2_2053 at 2443.880 kb on - strand, within Pf6N2E2_2053 at 2443.880 kb on - strand, within Pf6N2E2_2053 at 2443.880 kb on - strand, within Pf6N2E2_2053 at 2443.880 kb on - strand, within Pf6N2E2_2053 at 2443.932 kb on + strand, within Pf6N2E2_2053 at 2443.953 kb on + strand, within Pf6N2E2_2053 at 2443.995 kb on + strand, within Pf6N2E2_2053 at 2443.995 kb on + strand, within Pf6N2E2_2053 at 2443.995 kb on + strand, within Pf6N2E2_2053 at 2443.996 kb on - strand, within Pf6N2E2_2053 at 2443.996 kb on - strand, within Pf6N2E2_2053 at 2443.996 kb on - strand, within Pf6N2E2_2053 at 2444.055 kb on + strand, within Pf6N2E2_2053 at 2444.055 kb on + strand, within Pf6N2E2_2053 at 2444.055 kb on + strand, within Pf6N2E2_2053 at 2444.056 kb on - strand, within Pf6N2E2_2053 at 2444.056 kb on - strand, within Pf6N2E2_2053 at 2444.076 kb on + strand, within Pf6N2E2_2053 at 2444.076 kb on + strand, within Pf6N2E2_2053 at 2444.194 kb on - strand, within Pf6N2E2_2053 at 2444.236 kb on - strand, within Pf6N2E2_2053 at 2444.238 kb on + strand, within Pf6N2E2_2053 at 2444.238 kb on + strand, within Pf6N2E2_2053 at 2444.238 kb on + strand, within Pf6N2E2_2053 at 2444.471 kb on - strand, within Pf6N2E2_2053 at 2444.471 kb on - strand, within Pf6N2E2_2053 at 2444.874 kb on + strand at 2444.874 kb on + strand at 2444.926 kb on - strand at 2444.926 kb on - strand at 2444.934 kb on + strand at 2444.934 kb on + strand at 2444.934 kb on + strand at 2444.946 kb on + strand at 2444.947 kb on - strand at 2444.947 kb on - strand at 2444.947 kb on - strand at 2444.976 kb on + strand, within Pf6N2E2_2054 at 2444.976 kb on + strand, within Pf6N2E2_2054 at 2444.976 kb on + strand, within Pf6N2E2_2054 at 2444.977 kb on - strand, within Pf6N2E2_2054 at 2444.977 kb on - strand, within Pf6N2E2_2054 at 2444.977 kb on - strand, within Pf6N2E2_2054 at 2445.004 kb on - strand, within Pf6N2E2_2054 at 2445.004 kb on - strand, within Pf6N2E2_2054 at 2445.245 kb on + strand at 2445.245 kb on + strand at 2445.246 kb on - strand at 2445.246 kb on - strand at 2445.303 kb on - strand at 2445.303 kb on - strand at 2445.308 kb on - strand at 2445.376 kb on - strand at 2445.434 kb on + strand, within Pf6N2E2_2055 at 2445.435 kb on - strand, within Pf6N2E2_2055 at 2445.435 kb on - strand, within Pf6N2E2_2055 at 2445.435 kb on - strand, within Pf6N2E2_2055 at 2445.435 kb on - strand, within Pf6N2E2_2055 at 2445.482 kb on - strand, within Pf6N2E2_2055
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 2,442,801 + Pf6N2E2_2051 0.64 -2.7 2,442,801 + Pf6N2E2_2051 0.64 -2.0 2,442,801 + Pf6N2E2_2051 0.64 -2.1 2,442,801 + Pf6N2E2_2051 0.64 -2.9 2,442,801 + Pf6N2E2_2051 0.64 -1.3 2,442,801 + Pf6N2E2_2051 0.64 -2.9 2,442,801 + Pf6N2E2_2051 0.64 +0.5 2,442,802 - Pf6N2E2_2051 0.65 -1.9 2,442,802 - Pf6N2E2_2051 0.65 -2.7 2,442,802 - Pf6N2E2_2051 0.65 -2.1 2,442,802 - Pf6N2E2_2051 0.65 -1.6 2,442,802 - Pf6N2E2_2051 0.65 -2.2 2,442,855 + Pf6N2E2_2051 0.73 -0.7 2,442,855 + Pf6N2E2_2051 0.73 -0.8 2,442,855 + Pf6N2E2_2051 0.73 -2.0 2,442,856 - Pf6N2E2_2051 0.73 -3.7 2,442,856 - Pf6N2E2_2051 0.73 -1.6 2,442,891 + Pf6N2E2_2051 0.78 -1.6 2,442,891 + Pf6N2E2_2051 0.78 -0.6 2,442,892 - Pf6N2E2_2051 0.78 -3.2 2,443,004 + -1.0 2,443,032 + -2.1 2,443,032 + -2.2 2,443,033 - -3.3 2,443,033 - -0.7 2,443,033 - -1.2 2,443,101 + +0.0 2,443,102 - -1.7 2,443,102 - -1.5 2,443,116 + Pf6N2E2_2052 0.11 -1.4 2,443,116 + Pf6N2E2_2052 0.11 -2.0 2,443,116 + Pf6N2E2_2052 0.11 -1.9 2,443,117 - Pf6N2E2_2052 0.11 -1.2 2,443,117 - Pf6N2E2_2052 0.11 -3.2 2,443,117 - Pf6N2E2_2052 0.11 -1.6 2,443,182 + Pf6N2E2_2052 0.21 +0.0 2,443,185 + Pf6N2E2_2052 0.21 -2.1 2,443,185 + Pf6N2E2_2052 0.21 -1.3 2,443,186 - Pf6N2E2_2052 0.21 -1.9 2,443,186 - Pf6N2E2_2052 0.21 -2.3 2,443,186 - Pf6N2E2_2052 0.21 -2.4 2,443,268 + Pf6N2E2_2052 0.33 +0.3 2,443,269 - Pf6N2E2_2052 0.34 -1.0 2,443,269 - Pf6N2E2_2052 0.34 -1.7 2,443,300 - Pf6N2E2_2052 0.38 -2.1 2,443,399 - Pf6N2E2_2052 0.53 -1.5 2,443,399 - Pf6N2E2_2052 0.53 -2.5 2,443,399 - Pf6N2E2_2052 0.53 -3.4 2,443,479 + Pf6N2E2_2052 0.65 -0.2 2,443,510 + Pf6N2E2_2052 0.70 -2.9 2,443,511 - Pf6N2E2_2052 0.70 -3.5 2,443,531 - Pf6N2E2_2052 0.73 -3.3 2,443,531 - Pf6N2E2_2052 0.73 -1.0 2,443,839 + -2.7 2,443,839 + -2.5 2,443,839 + -0.5 2,443,839 + -2.3 2,443,839 + -2.0 2,443,839 + -2.1 2,443,839 + -1.9 2,443,839 + -1.9 2,443,840 - -3.1 2,443,840 - -2.7 2,443,840 - -3.1 2,443,840 - -1.7 2,443,840 - -0.3 2,443,879 + Pf6N2E2_2053 0.14 -1.9 2,443,879 + Pf6N2E2_2053 0.14 -2.4 2,443,879 + Pf6N2E2_2053 0.14 +0.5 2,443,880 - Pf6N2E2_2053 0.14 -3.2 2,443,880 - Pf6N2E2_2053 0.14 -2.4 2,443,880 - Pf6N2E2_2053 0.14 -1.4 2,443,880 - Pf6N2E2_2053 0.14 -2.0 2,443,932 + Pf6N2E2_2053 0.20 -2.1 2,443,953 + Pf6N2E2_2053 0.22 -0.5 2,443,995 + Pf6N2E2_2053 0.27 -2.0 2,443,995 + Pf6N2E2_2053 0.27 -0.3 2,443,995 + Pf6N2E2_2053 0.27 -0.9 2,443,996 - Pf6N2E2_2053 0.27 -2.5 2,443,996 - Pf6N2E2_2053 0.27 -0.2 2,443,996 - Pf6N2E2_2053 0.27 +1.0 2,444,055 + Pf6N2E2_2053 0.34 -2.8 2,444,055 + Pf6N2E2_2053 0.34 -2.2 2,444,055 + Pf6N2E2_2053 0.34 -3.9 2,444,056 - Pf6N2E2_2053 0.35 -2.2 2,444,056 - Pf6N2E2_2053 0.35 +0.0 2,444,076 + Pf6N2E2_2053 0.37 -1.8 2,444,076 + Pf6N2E2_2053 0.37 -1.6 2,444,194 - Pf6N2E2_2053 0.51 -0.4 2,444,236 - Pf6N2E2_2053 0.56 -2.9 2,444,238 + Pf6N2E2_2053 0.56 -3.2 2,444,238 + Pf6N2E2_2053 0.56 -3.0 2,444,238 + Pf6N2E2_2053 0.56 -2.6 2,444,471 - Pf6N2E2_2053 0.83 -1.4 2,444,471 - Pf6N2E2_2053 0.83 -1.8 2,444,874 + -0.8 2,444,874 + +0.4 2,444,926 - +0.5 2,444,926 - -1.1 2,444,934 + +0.1 2,444,934 + -0.8 2,444,934 + -0.7 2,444,946 + -1.7 2,444,947 - -1.0 2,444,947 - -0.2 2,444,947 - +0.3 2,444,976 + Pf6N2E2_2054 0.13 -2.2 2,444,976 + Pf6N2E2_2054 0.13 +0.3 2,444,976 + Pf6N2E2_2054 0.13 +1.7 2,444,977 - Pf6N2E2_2054 0.13 +0.3 2,444,977 - Pf6N2E2_2054 0.13 -0.3 2,444,977 - Pf6N2E2_2054 0.13 -1.4 2,445,004 - Pf6N2E2_2054 0.21 -2.0 2,445,004 - Pf6N2E2_2054 0.21 -2.4 2,445,245 + -1.0 2,445,245 + -0.5 2,445,246 - -0.2 2,445,246 - -0.5 2,445,303 - -1.3 2,445,303 - -0.2 2,445,308 - -1.0 2,445,376 - -0.3 2,445,434 + Pf6N2E2_2055 0.29 -0.3 2,445,435 - Pf6N2E2_2055 0.29 -0.0 2,445,435 - Pf6N2E2_2055 0.29 +0.0 2,445,435 - Pf6N2E2_2055 0.29 -0.6 2,445,435 - Pf6N2E2_2055 0.29 +1.9 2,445,482 - Pf6N2E2_2055 0.46 -0.4
Or see this region's nucleotide sequence