Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2053

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2051 and Pf6N2E2_2052 are separated by 9 nucleotidesPf6N2E2_2052 and Pf6N2E2_2053 are separated by 54 nucleotidesPf6N2E2_2053 and Pf6N2E2_2054 are separated by 321 nucleotidesPf6N2E2_2054 and Pf6N2E2_2055 are separated by 78 nucleotides Pf6N2E2_2051 - ABC transporter for D-Glucosamine Hydrochloride, permease component 1 (from data), at 2,442,374 to 2,443,036 _2051 Pf6N2E2_2052 - ABC transporter for D-Glucosamine Hydrochloride, permease component 2 (from data), at 2,443,046 to 2,443,708 _2052 Pf6N2E2_2053 - ABC transporter for D-Glucosamine, periplasmic substrate-binding component (from data), at 2,443,763 to 2,444,611 _2053 Pf6N2E2_2054 - hypothetical protein, at 2,444,933 to 2,445,274 _2054 Pf6N2E2_2055 - StbE replicon stabilization toxin, at 2,445,353 to 2,445,634 _2055 Position (kb) 2443 2444 2445Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2442.801 kb on + strand, within Pf6N2E2_2051at 2442.801 kb on + strand, within Pf6N2E2_2051at 2442.801 kb on + strand, within Pf6N2E2_2051at 2442.801 kb on + strand, within Pf6N2E2_2051at 2442.801 kb on + strand, within Pf6N2E2_2051at 2442.801 kb on + strand, within Pf6N2E2_2051at 2442.801 kb on + strand, within Pf6N2E2_2051at 2442.802 kb on - strand, within Pf6N2E2_2051at 2442.802 kb on - strand, within Pf6N2E2_2051at 2442.802 kb on - strand, within Pf6N2E2_2051at 2442.802 kb on - strand, within Pf6N2E2_2051at 2442.802 kb on - strand, within Pf6N2E2_2051at 2442.855 kb on + strand, within Pf6N2E2_2051at 2442.855 kb on + strand, within Pf6N2E2_2051at 2442.855 kb on + strand, within Pf6N2E2_2051at 2442.856 kb on - strand, within Pf6N2E2_2051at 2442.856 kb on - strand, within Pf6N2E2_2051at 2442.891 kb on + strand, within Pf6N2E2_2051at 2442.891 kb on + strand, within Pf6N2E2_2051at 2442.892 kb on - strand, within Pf6N2E2_2051at 2443.004 kb on + strandat 2443.032 kb on + strandat 2443.032 kb on + strandat 2443.033 kb on - strandat 2443.033 kb on - strandat 2443.033 kb on - strandat 2443.101 kb on + strandat 2443.102 kb on - strandat 2443.102 kb on - strandat 2443.116 kb on + strand, within Pf6N2E2_2052at 2443.116 kb on + strand, within Pf6N2E2_2052at 2443.116 kb on + strand, within Pf6N2E2_2052at 2443.117 kb on - strand, within Pf6N2E2_2052at 2443.117 kb on - strand, within Pf6N2E2_2052at 2443.117 kb on - strand, within Pf6N2E2_2052at 2443.182 kb on + strand, within Pf6N2E2_2052at 2443.185 kb on + strand, within Pf6N2E2_2052at 2443.185 kb on + strand, within Pf6N2E2_2052at 2443.186 kb on - strand, within Pf6N2E2_2052at 2443.186 kb on - strand, within Pf6N2E2_2052at 2443.186 kb on - strand, within Pf6N2E2_2052at 2443.268 kb on + strand, within Pf6N2E2_2052at 2443.269 kb on - strand, within Pf6N2E2_2052at 2443.269 kb on - strand, within Pf6N2E2_2052at 2443.300 kb on - strand, within Pf6N2E2_2052at 2443.399 kb on - strand, within Pf6N2E2_2052at 2443.399 kb on - strand, within Pf6N2E2_2052at 2443.399 kb on - strand, within Pf6N2E2_2052at 2443.479 kb on + strand, within Pf6N2E2_2052at 2443.510 kb on + strand, within Pf6N2E2_2052at 2443.511 kb on - strand, within Pf6N2E2_2052at 2443.531 kb on - strand, within Pf6N2E2_2052at 2443.531 kb on - strand, within Pf6N2E2_2052at 2443.839 kb on + strandat 2443.839 kb on + strandat 2443.839 kb on + strandat 2443.839 kb on + strandat 2443.839 kb on + strandat 2443.839 kb on + strandat 2443.839 kb on + strandat 2443.839 kb on + strandat 2443.840 kb on - strandat 2443.840 kb on - strandat 2443.840 kb on - strandat 2443.840 kb on - strandat 2443.840 kb on - strandat 2443.879 kb on + strand, within Pf6N2E2_2053at 2443.879 kb on + strand, within Pf6N2E2_2053at 2443.879 kb on + strand, within Pf6N2E2_2053at 2443.880 kb on - strand, within Pf6N2E2_2053at 2443.880 kb on - strand, within Pf6N2E2_2053at 2443.880 kb on - strand, within Pf6N2E2_2053at 2443.880 kb on - strand, within Pf6N2E2_2053at 2443.932 kb on + strand, within Pf6N2E2_2053at 2443.953 kb on + strand, within Pf6N2E2_2053at 2443.995 kb on + strand, within Pf6N2E2_2053at 2443.995 kb on + strand, within Pf6N2E2_2053at 2443.995 kb on + strand, within Pf6N2E2_2053at 2443.996 kb on - strand, within Pf6N2E2_2053at 2443.996 kb on - strand, within Pf6N2E2_2053at 2443.996 kb on - strand, within Pf6N2E2_2053at 2444.055 kb on + strand, within Pf6N2E2_2053at 2444.055 kb on + strand, within Pf6N2E2_2053at 2444.055 kb on + strand, within Pf6N2E2_2053at 2444.056 kb on - strand, within Pf6N2E2_2053at 2444.056 kb on - strand, within Pf6N2E2_2053at 2444.076 kb on + strand, within Pf6N2E2_2053at 2444.076 kb on + strand, within Pf6N2E2_2053at 2444.194 kb on - strand, within Pf6N2E2_2053at 2444.236 kb on - strand, within Pf6N2E2_2053at 2444.238 kb on + strand, within Pf6N2E2_2053at 2444.238 kb on + strand, within Pf6N2E2_2053at 2444.238 kb on + strand, within Pf6N2E2_2053at 2444.471 kb on - strand, within Pf6N2E2_2053at 2444.471 kb on - strand, within Pf6N2E2_2053at 2444.874 kb on + strandat 2444.874 kb on + strandat 2444.926 kb on - strandat 2444.926 kb on - strandat 2444.934 kb on + strandat 2444.934 kb on + strandat 2444.934 kb on + strandat 2444.946 kb on + strandat 2444.947 kb on - strandat 2444.947 kb on - strandat 2444.947 kb on - strandat 2444.976 kb on + strand, within Pf6N2E2_2054at 2444.976 kb on + strand, within Pf6N2E2_2054at 2444.976 kb on + strand, within Pf6N2E2_2054at 2444.977 kb on - strand, within Pf6N2E2_2054at 2444.977 kb on - strand, within Pf6N2E2_2054at 2444.977 kb on - strand, within Pf6N2E2_2054at 2445.004 kb on - strand, within Pf6N2E2_2054at 2445.004 kb on - strand, within Pf6N2E2_2054at 2445.245 kb on + strandat 2445.245 kb on + strandat 2445.246 kb on - strandat 2445.246 kb on - strandat 2445.303 kb on - strandat 2445.303 kb on - strandat 2445.308 kb on - strandat 2445.376 kb on - strandat 2445.434 kb on + strand, within Pf6N2E2_2055at 2445.435 kb on - strand, within Pf6N2E2_2055at 2445.435 kb on - strand, within Pf6N2E2_2055at 2445.435 kb on - strand, within Pf6N2E2_2055at 2445.435 kb on - strand, within Pf6N2E2_2055at 2445.482 kb on - strand, within Pf6N2E2_2055

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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2,442,801 + Pf6N2E2_2051 0.64 -2.7
2,442,801 + Pf6N2E2_2051 0.64 -2.0
2,442,801 + Pf6N2E2_2051 0.64 -2.1
2,442,801 + Pf6N2E2_2051 0.64 -2.9
2,442,801 + Pf6N2E2_2051 0.64 -1.3
2,442,801 + Pf6N2E2_2051 0.64 -2.9
2,442,801 + Pf6N2E2_2051 0.64 +0.5
2,442,802 - Pf6N2E2_2051 0.65 -1.9
2,442,802 - Pf6N2E2_2051 0.65 -2.7
2,442,802 - Pf6N2E2_2051 0.65 -2.1
2,442,802 - Pf6N2E2_2051 0.65 -1.6
2,442,802 - Pf6N2E2_2051 0.65 -2.2
2,442,855 + Pf6N2E2_2051 0.73 -0.7
2,442,855 + Pf6N2E2_2051 0.73 -0.8
2,442,855 + Pf6N2E2_2051 0.73 -2.0
2,442,856 - Pf6N2E2_2051 0.73 -3.7
2,442,856 - Pf6N2E2_2051 0.73 -1.6
2,442,891 + Pf6N2E2_2051 0.78 -1.6
2,442,891 + Pf6N2E2_2051 0.78 -0.6
2,442,892 - Pf6N2E2_2051 0.78 -3.2
2,443,004 + -1.0
2,443,032 + -2.1
2,443,032 + -2.2
2,443,033 - -3.3
2,443,033 - -0.7
2,443,033 - -1.2
2,443,101 + +0.0
2,443,102 - -1.7
2,443,102 - -1.5
2,443,116 + Pf6N2E2_2052 0.11 -1.4
2,443,116 + Pf6N2E2_2052 0.11 -2.0
2,443,116 + Pf6N2E2_2052 0.11 -1.9
2,443,117 - Pf6N2E2_2052 0.11 -1.2
2,443,117 - Pf6N2E2_2052 0.11 -3.2
2,443,117 - Pf6N2E2_2052 0.11 -1.6
2,443,182 + Pf6N2E2_2052 0.21 +0.0
2,443,185 + Pf6N2E2_2052 0.21 -2.1
2,443,185 + Pf6N2E2_2052 0.21 -1.3
2,443,186 - Pf6N2E2_2052 0.21 -1.9
2,443,186 - Pf6N2E2_2052 0.21 -2.3
2,443,186 - Pf6N2E2_2052 0.21 -2.4
2,443,268 + Pf6N2E2_2052 0.33 +0.3
2,443,269 - Pf6N2E2_2052 0.34 -1.0
2,443,269 - Pf6N2E2_2052 0.34 -1.7
2,443,300 - Pf6N2E2_2052 0.38 -2.1
2,443,399 - Pf6N2E2_2052 0.53 -1.5
2,443,399 - Pf6N2E2_2052 0.53 -2.5
2,443,399 - Pf6N2E2_2052 0.53 -3.4
2,443,479 + Pf6N2E2_2052 0.65 -0.2
2,443,510 + Pf6N2E2_2052 0.70 -2.9
2,443,511 - Pf6N2E2_2052 0.70 -3.5
2,443,531 - Pf6N2E2_2052 0.73 -3.3
2,443,531 - Pf6N2E2_2052 0.73 -1.0
2,443,839 + -2.7
2,443,839 + -2.5
2,443,839 + -0.5
2,443,839 + -2.3
2,443,839 + -2.0
2,443,839 + -2.1
2,443,839 + -1.9
2,443,839 + -1.9
2,443,840 - -3.1
2,443,840 - -2.7
2,443,840 - -3.1
2,443,840 - -1.7
2,443,840 - -0.3
2,443,879 + Pf6N2E2_2053 0.14 -1.9
2,443,879 + Pf6N2E2_2053 0.14 -2.4
2,443,879 + Pf6N2E2_2053 0.14 +0.5
2,443,880 - Pf6N2E2_2053 0.14 -3.2
2,443,880 - Pf6N2E2_2053 0.14 -2.4
2,443,880 - Pf6N2E2_2053 0.14 -1.4
2,443,880 - Pf6N2E2_2053 0.14 -2.0
2,443,932 + Pf6N2E2_2053 0.20 -2.1
2,443,953 + Pf6N2E2_2053 0.22 -0.5
2,443,995 + Pf6N2E2_2053 0.27 -2.0
2,443,995 + Pf6N2E2_2053 0.27 -0.3
2,443,995 + Pf6N2E2_2053 0.27 -0.9
2,443,996 - Pf6N2E2_2053 0.27 -2.5
2,443,996 - Pf6N2E2_2053 0.27 -0.2
2,443,996 - Pf6N2E2_2053 0.27 +1.0
2,444,055 + Pf6N2E2_2053 0.34 -2.8
2,444,055 + Pf6N2E2_2053 0.34 -2.2
2,444,055 + Pf6N2E2_2053 0.34 -3.9
2,444,056 - Pf6N2E2_2053 0.35 -2.2
2,444,056 - Pf6N2E2_2053 0.35 +0.0
2,444,076 + Pf6N2E2_2053 0.37 -1.8
2,444,076 + Pf6N2E2_2053 0.37 -1.6
2,444,194 - Pf6N2E2_2053 0.51 -0.4
2,444,236 - Pf6N2E2_2053 0.56 -2.9
2,444,238 + Pf6N2E2_2053 0.56 -3.2
2,444,238 + Pf6N2E2_2053 0.56 -3.0
2,444,238 + Pf6N2E2_2053 0.56 -2.6
2,444,471 - Pf6N2E2_2053 0.83 -1.4
2,444,471 - Pf6N2E2_2053 0.83 -1.8
2,444,874 + -0.8
2,444,874 + +0.4
2,444,926 - +0.5
2,444,926 - -1.1
2,444,934 + +0.1
2,444,934 + -0.8
2,444,934 + -0.7
2,444,946 + -1.7
2,444,947 - -1.0
2,444,947 - -0.2
2,444,947 - +0.3
2,444,976 + Pf6N2E2_2054 0.13 -2.2
2,444,976 + Pf6N2E2_2054 0.13 +0.3
2,444,976 + Pf6N2E2_2054 0.13 +1.7
2,444,977 - Pf6N2E2_2054 0.13 +0.3
2,444,977 - Pf6N2E2_2054 0.13 -0.3
2,444,977 - Pf6N2E2_2054 0.13 -1.4
2,445,004 - Pf6N2E2_2054 0.21 -2.0
2,445,004 - Pf6N2E2_2054 0.21 -2.4
2,445,245 + -1.0
2,445,245 + -0.5
2,445,246 - -0.2
2,445,246 - -0.5
2,445,303 - -1.3
2,445,303 - -0.2
2,445,308 - -1.0
2,445,376 - -0.3
2,445,434 + Pf6N2E2_2055 0.29 -0.3
2,445,435 - Pf6N2E2_2055 0.29 -0.0
2,445,435 - Pf6N2E2_2055 0.29 +0.0
2,445,435 - Pf6N2E2_2055 0.29 -0.6
2,445,435 - Pf6N2E2_2055 0.29 +1.9
2,445,482 - Pf6N2E2_2055 0.46 -0.4

Or see this region's nucleotide sequence