Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2047

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2046 and Pf6N2E2_2047 are separated by 138 nucleotidesPf6N2E2_2047 and Pf6N2E2_2048 are separated by 41 nucleotides Pf6N2E2_2046 - 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45), at 2,437,860 to 2,438,777 _2046 Pf6N2E2_2047 - D-glucosaminate dehydratase (EC 4.3.1.9) (from data), at 2,438,916 to 2,440,133 _2047 Pf6N2E2_2048 - Transcriptional regulator, IclR family, at 2,440,175 to 2,440,939 _2048 Position (kb) 2438 2439 2440 2441Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2437.970 kb on - strand, within Pf6N2E2_2046at 2438.041 kb on + strand, within Pf6N2E2_2046at 2438.041 kb on + strand, within Pf6N2E2_2046at 2438.041 kb on + strand, within Pf6N2E2_2046at 2438.042 kb on - strand, within Pf6N2E2_2046at 2438.042 kb on - strand, within Pf6N2E2_2046at 2438.092 kb on - strand, within Pf6N2E2_2046at 2438.120 kb on - strand, within Pf6N2E2_2046at 2438.120 kb on - strand, within Pf6N2E2_2046at 2438.176 kb on - strand, within Pf6N2E2_2046at 2438.200 kb on + strand, within Pf6N2E2_2046at 2438.219 kb on - strand, within Pf6N2E2_2046at 2438.375 kb on - strand, within Pf6N2E2_2046at 2438.375 kb on - strand, within Pf6N2E2_2046at 2438.430 kb on - strand, within Pf6N2E2_2046at 2438.465 kb on - strand, within Pf6N2E2_2046at 2438.506 kb on + strand, within Pf6N2E2_2046at 2438.507 kb on - strand, within Pf6N2E2_2046at 2438.507 kb on - strand, within Pf6N2E2_2046at 2438.507 kb on - strand, within Pf6N2E2_2046at 2438.507 kb on - strand, within Pf6N2E2_2046at 2438.620 kb on + strand, within Pf6N2E2_2046at 2438.660 kb on - strand, within Pf6N2E2_2046at 2438.853 kb on + strandat 2438.854 kb on - strandat 2438.918 kb on - strandat 2439.145 kb on + strand, within Pf6N2E2_2047at 2439.322 kb on + strand, within Pf6N2E2_2047at 2439.322 kb on + strand, within Pf6N2E2_2047at 2439.322 kb on + strand, within Pf6N2E2_2047at 2439.323 kb on - strand, within Pf6N2E2_2047at 2439.346 kb on + strand, within Pf6N2E2_2047at 2439.347 kb on - strand, within Pf6N2E2_2047at 2439.673 kb on + strand, within Pf6N2E2_2047at 2439.698 kb on + strand, within Pf6N2E2_2047at 2439.862 kb on + strand, within Pf6N2E2_2047at 2440.105 kb on - strandat 2440.139 kb on + strandat 2440.139 kb on + strandat 2440.139 kb on + strandat 2440.172 kb on + strandat 2440.173 kb on - strandat 2440.176 kb on + strandat 2440.176 kb on + strandat 2440.176 kb on + strandat 2440.176 kb on + strandat 2440.176 kb on + strandat 2440.176 kb on + strandat 2440.177 kb on - strandat 2440.239 kb on + strandat 2440.240 kb on - strandat 2440.240 kb on - strandat 2440.593 kb on + strand, within Pf6N2E2_2048at 2440.593 kb on + strand, within Pf6N2E2_2048at 2440.594 kb on - strand, within Pf6N2E2_2048at 2440.717 kb on - strand, within Pf6N2E2_2048at 2440.717 kb on - strand, within Pf6N2E2_2048at 2440.717 kb on - strand, within Pf6N2E2_2048at 2440.734 kb on + strand, within Pf6N2E2_2048at 2440.734 kb on + strand, within Pf6N2E2_2048at 2440.734 kb on + strand, within Pf6N2E2_2048at 2440.734 kb on + strand, within Pf6N2E2_2048at 2440.735 kb on - strand, within Pf6N2E2_2048at 2440.800 kb on + strand, within Pf6N2E2_2048at 2440.800 kb on + strand, within Pf6N2E2_2048at 2440.801 kb on - strand, within Pf6N2E2_2048at 2440.801 kb on - strand, within Pf6N2E2_2048at 2440.801 kb on - strand, within Pf6N2E2_2048at 2440.838 kb on - strand, within Pf6N2E2_2048at 2440.973 kb on - strandat 2441.047 kb on - strandat 2441.082 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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2,437,970 - Pf6N2E2_2046 0.12 +2.2
2,438,041 + Pf6N2E2_2046 0.20 +0.2
2,438,041 + Pf6N2E2_2046 0.20 -1.5
2,438,041 + Pf6N2E2_2046 0.20 -0.9
2,438,042 - Pf6N2E2_2046 0.20 +0.4
2,438,042 - Pf6N2E2_2046 0.20 -1.0
2,438,092 - Pf6N2E2_2046 0.25 +0.8
2,438,120 - Pf6N2E2_2046 0.28 +0.8
2,438,120 - Pf6N2E2_2046 0.28 +1.1
2,438,176 - Pf6N2E2_2046 0.34 -0.0
2,438,200 + Pf6N2E2_2046 0.37 +0.3
2,438,219 - Pf6N2E2_2046 0.39 +0.7
2,438,375 - Pf6N2E2_2046 0.56 -0.3
2,438,375 - Pf6N2E2_2046 0.56 +0.6
2,438,430 - Pf6N2E2_2046 0.62 +0.2
2,438,465 - Pf6N2E2_2046 0.66 +0.7
2,438,506 + Pf6N2E2_2046 0.70 +0.5
2,438,507 - Pf6N2E2_2046 0.70 +0.8
2,438,507 - Pf6N2E2_2046 0.70 -2.3
2,438,507 - Pf6N2E2_2046 0.70 -0.5
2,438,507 - Pf6N2E2_2046 0.70 +1.0
2,438,620 + Pf6N2E2_2046 0.83 -0.2
2,438,660 - Pf6N2E2_2046 0.87 -0.8
2,438,853 + -0.1
2,438,854 - +0.8
2,438,918 - +1.8
2,439,145 + Pf6N2E2_2047 0.19 -1.9
2,439,322 + Pf6N2E2_2047 0.33 -1.5
2,439,322 + Pf6N2E2_2047 0.33 -0.5
2,439,322 + Pf6N2E2_2047 0.33 -0.7
2,439,323 - Pf6N2E2_2047 0.33 -2.5
2,439,346 + Pf6N2E2_2047 0.35 -2.3
2,439,347 - Pf6N2E2_2047 0.35 -1.5
2,439,673 + Pf6N2E2_2047 0.62 -1.8
2,439,698 + Pf6N2E2_2047 0.64 -3.7
2,439,862 + Pf6N2E2_2047 0.78 -1.3
2,440,105 - -0.2
2,440,139 + -2.3
2,440,139 + -0.9
2,440,139 + -3.0
2,440,172 + -2.1
2,440,173 - +0.3
2,440,176 + -2.9
2,440,176 + -0.2
2,440,176 + -2.5
2,440,176 + -1.7
2,440,176 + -3.1
2,440,176 + -3.5
2,440,177 - -0.2
2,440,239 + -0.2
2,440,240 - -2.8
2,440,240 - -2.5
2,440,593 + Pf6N2E2_2048 0.55 -3.6
2,440,593 + Pf6N2E2_2048 0.55 -3.6
2,440,594 - Pf6N2E2_2048 0.55 -1.6
2,440,717 - Pf6N2E2_2048 0.71 +1.0
2,440,717 - Pf6N2E2_2048 0.71 -0.4
2,440,717 - Pf6N2E2_2048 0.71 +0.3
2,440,734 + Pf6N2E2_2048 0.73 -3.2
2,440,734 + Pf6N2E2_2048 0.73 -3.7
2,440,734 + Pf6N2E2_2048 0.73 -3.0
2,440,734 + Pf6N2E2_2048 0.73 -2.5
2,440,735 - Pf6N2E2_2048 0.73 -0.9
2,440,800 + Pf6N2E2_2048 0.82 -2.6
2,440,800 + Pf6N2E2_2048 0.82 -1.5
2,440,801 - Pf6N2E2_2048 0.82 +1.1
2,440,801 - Pf6N2E2_2048 0.82 -1.7
2,440,801 - Pf6N2E2_2048 0.82 -0.8
2,440,838 - Pf6N2E2_2048 0.87 +0.5
2,440,973 - +1.0
2,441,047 - -2.5
2,441,082 - -0.5

Or see this region's nucleotide sequence