Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1967 and Pf6N2E2_1968 overlap by 14 nucleotides Pf6N2E2_1968 and Pf6N2E2_1969 overlap by 48 nucleotides
Pf6N2E2_1967 - Cobalt-zinc-cadmium resistance protein, at 2,333,286 to 2,333,915
_1967
Pf6N2E2_1968 - Cobalt-zinc-cadmium resistance protein, at 2,333,902 to 2,334,018
_1968
Pf6N2E2_1969 - Major facilitator superfamily MFS_1, at 2,333,971 to 2,334,858
_1969
Position (kb)
2333
2334
2335 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2333.124 kb on - strand at 2333.124 kb on - strand at 2333.159 kb on - strand at 2333.193 kb on - strand at 2333.213 kb on - strand at 2333.213 kb on - strand at 2333.244 kb on + strand at 2333.245 kb on - strand at 2333.254 kb on + strand at 2333.254 kb on + strand at 2333.254 kb on + strand at 2333.254 kb on + strand at 2333.255 kb on - strand at 2333.255 kb on - strand at 2333.255 kb on - strand at 2333.255 kb on - strand at 2333.470 kb on + strand, within Pf6N2E2_1967 at 2333.470 kb on + strand, within Pf6N2E2_1967 at 2333.470 kb on + strand, within Pf6N2E2_1967 at 2333.471 kb on - strand, within Pf6N2E2_1967 at 2333.471 kb on - strand, within Pf6N2E2_1967 at 2333.479 kb on + strand, within Pf6N2E2_1967 at 2333.479 kb on + strand, within Pf6N2E2_1967 at 2333.479 kb on + strand, within Pf6N2E2_1967 at 2333.479 kb on + strand, within Pf6N2E2_1967 at 2333.479 kb on + strand, within Pf6N2E2_1967 at 2333.480 kb on - strand, within Pf6N2E2_1967 at 2333.499 kb on + strand, within Pf6N2E2_1967 at 2333.500 kb on - strand, within Pf6N2E2_1967 at 2333.562 kb on + strand, within Pf6N2E2_1967 at 2333.563 kb on - strand, within Pf6N2E2_1967 at 2333.647 kb on + strand, within Pf6N2E2_1967 at 2333.647 kb on + strand, within Pf6N2E2_1967 at 2333.647 kb on + strand, within Pf6N2E2_1967 at 2333.647 kb on + strand, within Pf6N2E2_1967 at 2333.647 kb on + strand, within Pf6N2E2_1967 at 2333.647 kb on + strand, within Pf6N2E2_1967 at 2333.648 kb on - strand, within Pf6N2E2_1967 at 2333.648 kb on - strand, within Pf6N2E2_1967 at 2333.648 kb on - strand, within Pf6N2E2_1967 at 2333.648 kb on - strand, within Pf6N2E2_1967 at 2333.648 kb on - strand, within Pf6N2E2_1967 at 2333.648 kb on - strand, within Pf6N2E2_1967 at 2333.801 kb on - strand, within Pf6N2E2_1967 at 2333.809 kb on + strand, within Pf6N2E2_1967 at 2333.842 kb on + strand, within Pf6N2E2_1967 at 2333.842 kb on + strand, within Pf6N2E2_1967 at 2333.843 kb on - strand, within Pf6N2E2_1967 at 2333.904 kb on - strand at 2333.915 kb on + strand at 2333.915 kb on + strand at 2333.915 kb on + strand at 2333.915 kb on + strand at 2333.915 kb on + strand at 2333.915 kb on + strand at 2333.915 kb on + strand at 2333.916 kb on - strand, within Pf6N2E2_1968 at 2333.916 kb on - strand, within Pf6N2E2_1968 at 2333.916 kb on - strand, within Pf6N2E2_1968 at 2333.916 kb on - strand, within Pf6N2E2_1968 at 2333.916 kb on - strand, within Pf6N2E2_1968 at 2334.041 kb on - strand at 2334.041 kb on - strand at 2334.041 kb on - strand at 2334.154 kb on + strand, within Pf6N2E2_1969 at 2334.495 kb on - strand, within Pf6N2E2_1969 at 2334.515 kb on + strand, within Pf6N2E2_1969 at 2334.515 kb on + strand, within Pf6N2E2_1969 at 2334.515 kb on + strand, within Pf6N2E2_1969 at 2334.515 kb on + strand, within Pf6N2E2_1969 at 2334.515 kb on + strand, within Pf6N2E2_1969 at 2334.515 kb on + strand, within Pf6N2E2_1969 at 2334.516 kb on - strand, within Pf6N2E2_1969 at 2334.516 kb on - strand, within Pf6N2E2_1969 at 2334.516 kb on - strand, within Pf6N2E2_1969 at 2334.516 kb on - strand, within Pf6N2E2_1969 at 2334.516 kb on - strand, within Pf6N2E2_1969 at 2334.603 kb on - strand, within Pf6N2E2_1969 at 2334.649 kb on + strand, within Pf6N2E2_1969 at 2334.679 kb on + strand, within Pf6N2E2_1969 at 2334.679 kb on + strand, within Pf6N2E2_1969 at 2334.680 kb on - strand, within Pf6N2E2_1969 at 2334.680 kb on - strand, within Pf6N2E2_1969 at 2334.680 kb on - strand, within Pf6N2E2_1969 at 2334.680 kb on - strand, within Pf6N2E2_1969 at 2334.689 kb on + strand, within Pf6N2E2_1969 at 2334.689 kb on + strand, within Pf6N2E2_1969 at 2334.689 kb on + strand, within Pf6N2E2_1969 at 2334.689 kb on + strand, within Pf6N2E2_1969 at 2334.690 kb on - strand, within Pf6N2E2_1969 at 2334.690 kb on - strand, within Pf6N2E2_1969 at 2334.690 kb on - strand, within Pf6N2E2_1969 at 2334.690 kb on - strand, within Pf6N2E2_1969 at 2334.690 kb on - strand, within Pf6N2E2_1969 at 2334.690 kb on - strand, within Pf6N2E2_1969 at 2334.690 kb on - strand, within Pf6N2E2_1969 at 2334.691 kb on + strand, within Pf6N2E2_1969 at 2334.692 kb on - strand, within Pf6N2E2_1969 at 2334.734 kb on + strand, within Pf6N2E2_1969 at 2334.734 kb on + strand, within Pf6N2E2_1969 at 2334.735 kb on - strand, within Pf6N2E2_1969 at 2334.760 kb on - strand, within Pf6N2E2_1969 at 2334.760 kb on - strand, within Pf6N2E2_1969 at 2334.760 kb on - strand, within Pf6N2E2_1969 at 2334.763 kb on + strand, within Pf6N2E2_1969 at 2334.763 kb on + strand, within Pf6N2E2_1969 at 2334.763 kb on + strand, within Pf6N2E2_1969 at 2334.763 kb on + strand, within Pf6N2E2_1969 at 2334.763 kb on + strand, within Pf6N2E2_1969 at 2334.763 kb on + strand, within Pf6N2E2_1969 at 2334.763 kb on + strand, within Pf6N2E2_1969 at 2334.763 kb on + strand, within Pf6N2E2_1969 at 2334.764 kb on - strand, within Pf6N2E2_1969 at 2334.764 kb on - strand, within Pf6N2E2_1969 at 2334.764 kb on - strand, within Pf6N2E2_1969 at 2334.764 kb on - strand, within Pf6N2E2_1969 at 2334.786 kb on - strand at 2334.995 kb on - strand at 2335.128 kb on + strand at 2335.129 kb on - strand at 2335.149 kb on - strand at 2335.188 kb on - strand at 2335.188 kb on - strand at 2335.190 kb on + strand at 2335.191 kb on - strand at 2335.235 kb on + strand at 2335.236 kb on - strand at 2335.313 kb on - strand at 2335.461 kb on - strand at 2335.537 kb on + strand at 2335.537 kb on + strand at 2335.538 kb on - strand at 2335.538 kb on - strand at 2335.540 kb on + strand at 2335.541 kb on - strand at 2335.541 kb on - strand at 2335.555 kb on + strand at 2335.555 kb on + strand at 2335.556 kb on - strand at 2335.600 kb on - strand at 2335.600 kb on - strand at 2335.600 kb on - strand at 2335.619 kb on - strand at 2335.619 kb on - strand at 2335.690 kb on + strand at 2335.690 kb on + strand at 2335.690 kb on + strand at 2335.690 kb on + strand at 2335.690 kb on + strand at 2335.691 kb on - strand at 2335.691 kb on - strand at 2335.693 kb on + strand at 2335.694 kb on - strand at 2335.694 kb on - strand at 2335.696 kb on + strand at 2335.697 kb on - strand at 2335.705 kb on + strand at 2335.705 kb on + strand at 2335.705 kb on + strand at 2335.705 kb on + strand at 2335.705 kb on + strand at 2335.706 kb on - strand at 2335.706 kb on - strand at 2335.769 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 2,333,124 - +0.7 2,333,124 - -0.2 2,333,159 - +1.6 2,333,193 - +0.5 2,333,213 - +1.5 2,333,213 - -0.3 2,333,244 + +1.4 2,333,245 - +0.5 2,333,254 + -0.5 2,333,254 + +0.2 2,333,254 + +0.2 2,333,254 + -0.4 2,333,255 - -0.3 2,333,255 - -0.4 2,333,255 - +0.2 2,333,255 - +2.3 2,333,470 + Pf6N2E2_1967 0.29 +1.1 2,333,470 + Pf6N2E2_1967 0.29 +0.2 2,333,470 + Pf6N2E2_1967 0.29 +0.3 2,333,471 - Pf6N2E2_1967 0.29 +1.3 2,333,471 - Pf6N2E2_1967 0.29 +0.5 2,333,479 + Pf6N2E2_1967 0.31 +0.4 2,333,479 + Pf6N2E2_1967 0.31 -0.7 2,333,479 + Pf6N2E2_1967 0.31 -0.7 2,333,479 + Pf6N2E2_1967 0.31 -2.0 2,333,479 + Pf6N2E2_1967 0.31 -0.9 2,333,480 - Pf6N2E2_1967 0.31 -0.7 2,333,499 + Pf6N2E2_1967 0.34 +0.0 2,333,500 - Pf6N2E2_1967 0.34 +1.4 2,333,562 + Pf6N2E2_1967 0.44 +0.8 2,333,563 - Pf6N2E2_1967 0.44 +0.1 2,333,647 + Pf6N2E2_1967 0.57 +0.5 2,333,647 + Pf6N2E2_1967 0.57 +0.1 2,333,647 + Pf6N2E2_1967 0.57 -1.4 2,333,647 + Pf6N2E2_1967 0.57 +0.4 2,333,647 + Pf6N2E2_1967 0.57 -0.1 2,333,647 + Pf6N2E2_1967 0.57 -1.6 2,333,648 - Pf6N2E2_1967 0.57 -0.2 2,333,648 - Pf6N2E2_1967 0.57 +0.8 2,333,648 - Pf6N2E2_1967 0.57 -0.7 2,333,648 - Pf6N2E2_1967 0.57 +0.5 2,333,648 - Pf6N2E2_1967 0.57 -0.2 2,333,648 - Pf6N2E2_1967 0.57 +0.7 2,333,801 - Pf6N2E2_1967 0.82 +1.1 2,333,809 + Pf6N2E2_1967 0.83 +0.1 2,333,842 + Pf6N2E2_1967 0.88 -0.0 2,333,842 + Pf6N2E2_1967 0.88 -0.3 2,333,843 - Pf6N2E2_1967 0.88 -1.4 2,333,904 - -1.3 2,333,915 + +0.1 2,333,915 + +0.2 2,333,915 + -1.5 2,333,915 + -0.4 2,333,915 + -0.9 2,333,915 + -0.5 2,333,915 + +0.1 2,333,916 - Pf6N2E2_1968 0.12 +1.4 2,333,916 - Pf6N2E2_1968 0.12 +1.1 2,333,916 - Pf6N2E2_1968 0.12 +0.2 2,333,916 - Pf6N2E2_1968 0.12 -0.1 2,333,916 - Pf6N2E2_1968 0.12 +2.1 2,334,041 - +1.0 2,334,041 - -0.2 2,334,041 - +0.0 2,334,154 + Pf6N2E2_1969 0.21 +0.3 2,334,495 - Pf6N2E2_1969 0.59 -0.3 2,334,515 + Pf6N2E2_1969 0.61 -1.2 2,334,515 + Pf6N2E2_1969 0.61 -0.4 2,334,515 + Pf6N2E2_1969 0.61 +0.9 2,334,515 + Pf6N2E2_1969 0.61 -0.7 2,334,515 + Pf6N2E2_1969 0.61 -0.5 2,334,515 + Pf6N2E2_1969 0.61 -0.2 2,334,516 - Pf6N2E2_1969 0.61 +0.3 2,334,516 - Pf6N2E2_1969 0.61 +0.1 2,334,516 - Pf6N2E2_1969 0.61 +0.4 2,334,516 - Pf6N2E2_1969 0.61 +0.6 2,334,516 - Pf6N2E2_1969 0.61 +1.1 2,334,603 - Pf6N2E2_1969 0.71 -1.6 2,334,649 + Pf6N2E2_1969 0.76 -0.7 2,334,679 + Pf6N2E2_1969 0.80 -0.0 2,334,679 + Pf6N2E2_1969 0.80 +1.0 2,334,680 - Pf6N2E2_1969 0.80 +0.8 2,334,680 - Pf6N2E2_1969 0.80 -1.4 2,334,680 - Pf6N2E2_1969 0.80 -0.7 2,334,680 - Pf6N2E2_1969 0.80 -1.4 2,334,689 + Pf6N2E2_1969 0.81 +0.9 2,334,689 + Pf6N2E2_1969 0.81 +0.4 2,334,689 + Pf6N2E2_1969 0.81 -0.1 2,334,689 + Pf6N2E2_1969 0.81 +1.4 2,334,690 - Pf6N2E2_1969 0.81 +1.1 2,334,690 - Pf6N2E2_1969 0.81 +0.5 2,334,690 - Pf6N2E2_1969 0.81 +1.8 2,334,690 - Pf6N2E2_1969 0.81 -0.4 2,334,690 - Pf6N2E2_1969 0.81 +0.8 2,334,690 - Pf6N2E2_1969 0.81 +3.4 2,334,690 - Pf6N2E2_1969 0.81 -0.0 2,334,691 + Pf6N2E2_1969 0.81 -0.1 2,334,692 - Pf6N2E2_1969 0.81 +0.1 2,334,734 + Pf6N2E2_1969 0.86 +0.6 2,334,734 + Pf6N2E2_1969 0.86 -0.4 2,334,735 - Pf6N2E2_1969 0.86 +1.1 2,334,760 - Pf6N2E2_1969 0.89 +1.1 2,334,760 - Pf6N2E2_1969 0.89 +0.7 2,334,760 - Pf6N2E2_1969 0.89 +0.4 2,334,763 + Pf6N2E2_1969 0.89 +1.0 2,334,763 + Pf6N2E2_1969 0.89 +0.8 2,334,763 + Pf6N2E2_1969 0.89 +0.8 2,334,763 + Pf6N2E2_1969 0.89 +1.5 2,334,763 + Pf6N2E2_1969 0.89 +0.4 2,334,763 + Pf6N2E2_1969 0.89 +1.6 2,334,763 + Pf6N2E2_1969 0.89 +1.0 2,334,763 + Pf6N2E2_1969 0.89 +0.5 2,334,764 - Pf6N2E2_1969 0.89 -1.2 2,334,764 - Pf6N2E2_1969 0.89 -2.3 2,334,764 - Pf6N2E2_1969 0.89 +0.3 2,334,764 - Pf6N2E2_1969 0.89 -2.0 2,334,786 - +0.0 2,334,995 - -0.4 2,335,128 + +0.7 2,335,129 - +0.1 2,335,149 - -1.6 2,335,188 - +0.4 2,335,188 - +1.0 2,335,190 + +0.7 2,335,191 - -0.9 2,335,235 + +0.5 2,335,236 - -0.7 2,335,313 - -0.3 2,335,461 - +1.1 2,335,537 + +0.5 2,335,537 + +0.8 2,335,538 - +0.8 2,335,538 - -0.1 2,335,540 + +0.0 2,335,541 - -0.4 2,335,541 - -0.5 2,335,555 + -0.4 2,335,555 + -1.2 2,335,556 - -0.6 2,335,600 - -0.4 2,335,600 - +1.0 2,335,600 - +0.3 2,335,619 - -0.7 2,335,619 - +1.5 2,335,690 + -1.4 2,335,690 + +1.3 2,335,690 + +0.2 2,335,690 + +0.3 2,335,690 + +0.6 2,335,691 - +0.3 2,335,691 - +1.3 2,335,693 + -0.3 2,335,694 - +1.8 2,335,694 - -0.2 2,335,696 + +3.0 2,335,697 - -0.9 2,335,705 + -0.9 2,335,705 + -0.2 2,335,705 + +0.3 2,335,705 + -0.2 2,335,705 + +0.4 2,335,706 - +1.3 2,335,706 - +0.5 2,335,769 + +1.9
Or see this region's nucleotide sequence