Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1965

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1964 and Pf6N2E2_1965 are separated by 54 nucleotidesPf6N2E2_1965 and Pf6N2E2_1966 are separated by 841 nucleotides Pf6N2E2_1964 - Transcriptional regulator of various polyols utilization, AraC family, at 2,329,338 to 2,330,336 _1964 Pf6N2E2_1965 - Fructokinase (EC 2.7.1.4) (from data), at 2,330,391 to 2,331,311 _1965 Pf6N2E2_1966 - SAM-dependent methyltransferases, at 2,332,153 to 2,332,833 _1966 Position (kb) 2330 2331 2332Strain fitness (log2 ratio) -2 -1 0 1 2at 2329.473 kb on + strand, within Pf6N2E2_1964at 2329.524 kb on + strand, within Pf6N2E2_1964at 2329.525 kb on - strand, within Pf6N2E2_1964at 2329.647 kb on - strand, within Pf6N2E2_1964at 2329.730 kb on - strand, within Pf6N2E2_1964at 2329.738 kb on + strand, within Pf6N2E2_1964at 2329.739 kb on - strand, within Pf6N2E2_1964at 2329.756 kb on + strand, within Pf6N2E2_1964at 2329.880 kb on - strand, within Pf6N2E2_1964at 2329.974 kb on - strand, within Pf6N2E2_1964at 2329.974 kb on - strand, within Pf6N2E2_1964at 2329.974 kb on - strand, within Pf6N2E2_1964at 2329.989 kb on + strand, within Pf6N2E2_1964at 2329.989 kb on + strand, within Pf6N2E2_1964at 2330.146 kb on + strand, within Pf6N2E2_1964at 2330.191 kb on + strand, within Pf6N2E2_1964at 2330.192 kb on - strand, within Pf6N2E2_1964at 2330.267 kb on + strandat 2330.268 kb on - strandat 2330.365 kb on - strandat 2330.380 kb on + strandat 2330.381 kb on - strandat 2330.396 kb on + strandat 2330.396 kb on + strandat 2330.397 kb on - strandat 2330.397 kb on - strandat 2330.648 kb on - strand, within Pf6N2E2_1965at 2330.651 kb on + strand, within Pf6N2E2_1965at 2330.652 kb on - strand, within Pf6N2E2_1965at 2330.652 kb on - strand, within Pf6N2E2_1965at 2330.680 kb on - strand, within Pf6N2E2_1965at 2330.704 kb on + strand, within Pf6N2E2_1965at 2330.704 kb on + strand, within Pf6N2E2_1965at 2330.771 kb on + strand, within Pf6N2E2_1965at 2330.853 kb on + strand, within Pf6N2E2_1965at 2330.853 kb on + strand, within Pf6N2E2_1965at 2330.854 kb on - strand, within Pf6N2E2_1965at 2330.854 kb on - strand, within Pf6N2E2_1965at 2330.854 kb on - strand, within Pf6N2E2_1965at 2330.854 kb on - strand, within Pf6N2E2_1965at 2330.965 kb on + strand, within Pf6N2E2_1965at 2330.965 kb on + strand, within Pf6N2E2_1965at 2330.966 kb on - strand, within Pf6N2E2_1965at 2330.966 kb on - strand, within Pf6N2E2_1965at 2330.967 kb on + strand, within Pf6N2E2_1965at 2330.967 kb on + strand, within Pf6N2E2_1965at 2331.057 kb on - strand, within Pf6N2E2_1965at 2331.066 kb on + strand, within Pf6N2E2_1965at 2331.066 kb on + strand, within Pf6N2E2_1965at 2331.066 kb on + strand, within Pf6N2E2_1965at 2331.067 kb on - strand, within Pf6N2E2_1965at 2331.173 kb on - strand, within Pf6N2E2_1965at 2331.564 kb on + strandat 2331.570 kb on + strandat 2331.572 kb on + strandat 2331.642 kb on + strandat 2331.643 kb on - strandat 2331.643 kb on - strandat 2331.707 kb on + strandat 2331.726 kb on - strandat 2331.726 kb on - strandat 2331.726 kb on - strandat 2331.786 kb on + strandat 2331.787 kb on - strandat 2331.835 kb on + strandat 2331.836 kb on - strandat 2331.899 kb on - strandat 2331.911 kb on + strandat 2331.911 kb on + strandat 2331.914 kb on - strandat 2331.929 kb on + strandat 2331.929 kb on + strandat 2331.930 kb on - strandat 2332.102 kb on + strandat 2332.103 kb on - strandat 2332.103 kb on - strandat 2332.213 kb on + strandat 2332.217 kb on + strandat 2332.217 kb on + strandat 2332.218 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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2,329,473 + Pf6N2E2_1964 0.14 -0.2
2,329,524 + Pf6N2E2_1964 0.19 +0.4
2,329,525 - Pf6N2E2_1964 0.19 +0.2
2,329,647 - Pf6N2E2_1964 0.31 +1.5
2,329,730 - Pf6N2E2_1964 0.39 +1.8
2,329,738 + Pf6N2E2_1964 0.40 -0.5
2,329,739 - Pf6N2E2_1964 0.40 +0.7
2,329,756 + Pf6N2E2_1964 0.42 +0.3
2,329,880 - Pf6N2E2_1964 0.54 -0.5
2,329,974 - Pf6N2E2_1964 0.64 -0.2
2,329,974 - Pf6N2E2_1964 0.64 -0.3
2,329,974 - Pf6N2E2_1964 0.64 -0.6
2,329,989 + Pf6N2E2_1964 0.65 -0.7
2,329,989 + Pf6N2E2_1964 0.65 -1.3
2,330,146 + Pf6N2E2_1964 0.81 +1.3
2,330,191 + Pf6N2E2_1964 0.85 -0.5
2,330,192 - Pf6N2E2_1964 0.85 +0.0
2,330,267 + +1.4
2,330,268 - +0.3
2,330,365 - +0.3
2,330,380 + +0.1
2,330,381 - +0.1
2,330,396 + +0.1
2,330,396 + +0.7
2,330,397 - +0.2
2,330,397 - +1.8
2,330,648 - Pf6N2E2_1965 0.28 -0.9
2,330,651 + Pf6N2E2_1965 0.28 -0.3
2,330,652 - Pf6N2E2_1965 0.28 -0.2
2,330,652 - Pf6N2E2_1965 0.28 +1.2
2,330,680 - Pf6N2E2_1965 0.31 +1.3
2,330,704 + Pf6N2E2_1965 0.34 +0.7
2,330,704 + Pf6N2E2_1965 0.34 +0.4
2,330,771 + Pf6N2E2_1965 0.41 +0.5
2,330,853 + Pf6N2E2_1965 0.50 +1.8
2,330,853 + Pf6N2E2_1965 0.50 +0.3
2,330,854 - Pf6N2E2_1965 0.50 +0.3
2,330,854 - Pf6N2E2_1965 0.50 +0.0
2,330,854 - Pf6N2E2_1965 0.50 +1.4
2,330,854 - Pf6N2E2_1965 0.50 -1.3
2,330,965 + Pf6N2E2_1965 0.62 -1.3
2,330,965 + Pf6N2E2_1965 0.62 -0.7
2,330,966 - Pf6N2E2_1965 0.62 +1.8
2,330,966 - Pf6N2E2_1965 0.62 +0.7
2,330,967 + Pf6N2E2_1965 0.63 +1.4
2,330,967 + Pf6N2E2_1965 0.63 -1.3
2,331,057 - Pf6N2E2_1965 0.72 +1.1
2,331,066 + Pf6N2E2_1965 0.73 +1.0
2,331,066 + Pf6N2E2_1965 0.73 -0.3
2,331,066 + Pf6N2E2_1965 0.73 -0.5
2,331,067 - Pf6N2E2_1965 0.73 +0.1
2,331,173 - Pf6N2E2_1965 0.85 +0.0
2,331,564 + +0.5
2,331,570 + +0.7
2,331,572 + -0.7
2,331,642 + +0.6
2,331,643 - +1.4
2,331,643 - +1.5
2,331,707 + +0.6
2,331,726 - +1.1
2,331,726 - +1.4
2,331,726 - +0.5
2,331,786 + +1.1
2,331,787 - -0.6
2,331,835 + -1.2
2,331,836 - +0.3
2,331,899 - +0.3
2,331,911 + -0.4
2,331,911 + -0.9
2,331,914 - -2.1
2,331,929 + -1.2
2,331,929 + -0.3
2,331,930 - +1.4
2,332,102 + -1.2
2,332,103 - +0.4
2,332,103 - +1.1
2,332,213 + +0.0
2,332,217 + +0.7
2,332,217 + -0.2
2,332,218 - +0.8

Or see this region's nucleotide sequence