Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1931 and Pf6N2E2_1932 are separated by 121 nucleotides Pf6N2E2_1932 and Pf6N2E2_1933 are separated by 202 nucleotides
Pf6N2E2_1931 - Methyl-accepting chemotaxis protein, at 2,286,861 to 2,288,699
_1931
Pf6N2E2_1932 - Transcriptional regulator, IclR family, at 2,288,821 to 2,289,564
_1932
Pf6N2E2_1933 - TcuR: regulates tcuABC genes used in utilization of tricarballylate, at 2,289,767 to 2,290,699
_1933
Position (kb)
2288
2289
2290 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2287.832 kb on + strand, within Pf6N2E2_1931 at 2287.833 kb on - strand, within Pf6N2E2_1931 at 2287.833 kb on - strand, within Pf6N2E2_1931 at 2287.849 kb on + strand, within Pf6N2E2_1931 at 2287.849 kb on + strand, within Pf6N2E2_1931 at 2287.850 kb on - strand, within Pf6N2E2_1931 at 2288.412 kb on - strand, within Pf6N2E2_1931 at 2288.961 kb on - strand, within Pf6N2E2_1932 at 2288.961 kb on - strand, within Pf6N2E2_1932 at 2289.014 kb on - strand, within Pf6N2E2_1932 at 2289.149 kb on + strand, within Pf6N2E2_1932 at 2289.149 kb on + strand, within Pf6N2E2_1932 at 2289.149 kb on + strand, within Pf6N2E2_1932 at 2289.150 kb on - strand, within Pf6N2E2_1932 at 2289.150 kb on - strand, within Pf6N2E2_1932 at 2289.150 kb on - strand, within Pf6N2E2_1932 at 2289.150 kb on - strand, within Pf6N2E2_1932 at 2289.150 kb on - strand, within Pf6N2E2_1932 at 2289.150 kb on - strand, within Pf6N2E2_1932 at 2289.150 kb on - strand, within Pf6N2E2_1932 at 2289.429 kb on - strand, within Pf6N2E2_1932 at 2289.609 kb on - strand at 2289.674 kb on - strand at 2289.674 kb on - strand at 2289.674 kb on - strand at 2289.676 kb on + strand at 2289.677 kb on - strand at 2289.677 kb on - strand at 2289.677 kb on - strand at 2289.677 kb on - strand at 2289.677 kb on - strand at 2289.823 kb on + strand at 2289.824 kb on - strand at 2289.824 kb on - strand at 2289.956 kb on - strand, within Pf6N2E2_1933 at 2289.980 kb on - strand, within Pf6N2E2_1933 at 2290.127 kb on + strand, within Pf6N2E2_1933 at 2290.128 kb on - strand, within Pf6N2E2_1933 at 2290.128 kb on - strand, within Pf6N2E2_1933 at 2290.130 kb on - strand, within Pf6N2E2_1933 at 2290.223 kb on + strand, within Pf6N2E2_1933 at 2290.336 kb on + strand, within Pf6N2E2_1933 at 2290.337 kb on - strand, within Pf6N2E2_1933 at 2290.553 kb on + strand, within Pf6N2E2_1933
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 2,287,832 + Pf6N2E2_1931 0.53 -0.8 2,287,833 - Pf6N2E2_1931 0.53 +1.3 2,287,833 - Pf6N2E2_1931 0.53 +0.2 2,287,849 + Pf6N2E2_1931 0.54 +0.3 2,287,849 + Pf6N2E2_1931 0.54 +0.1 2,287,850 - Pf6N2E2_1931 0.54 +0.0 2,288,412 - Pf6N2E2_1931 0.84 +0.4 2,288,961 - Pf6N2E2_1932 0.19 -1.0 2,288,961 - Pf6N2E2_1932 0.19 -2.0 2,289,014 - Pf6N2E2_1932 0.26 -1.6 2,289,149 + Pf6N2E2_1932 0.44 -2.1 2,289,149 + Pf6N2E2_1932 0.44 -2.3 2,289,149 + Pf6N2E2_1932 0.44 -0.5 2,289,150 - Pf6N2E2_1932 0.44 -3.1 2,289,150 - Pf6N2E2_1932 0.44 -1.6 2,289,150 - Pf6N2E2_1932 0.44 -3.4 2,289,150 - Pf6N2E2_1932 0.44 -2.4 2,289,150 - Pf6N2E2_1932 0.44 -1.5 2,289,150 - Pf6N2E2_1932 0.44 -1.4 2,289,150 - Pf6N2E2_1932 0.44 +0.1 2,289,429 - Pf6N2E2_1932 0.82 -1.8 2,289,609 - +0.6 2,289,674 - -0.0 2,289,674 - -1.0 2,289,674 - +0.6 2,289,676 + +0.7 2,289,677 - -0.3 2,289,677 - +0.4 2,289,677 - -0.6 2,289,677 - +1.0 2,289,677 - +1.3 2,289,823 + +2.2 2,289,824 - -0.2 2,289,824 - -0.3 2,289,956 - Pf6N2E2_1933 0.20 +2.4 2,289,980 - Pf6N2E2_1933 0.23 -1.0 2,290,127 + Pf6N2E2_1933 0.39 +0.2 2,290,128 - Pf6N2E2_1933 0.39 -1.1 2,290,128 - Pf6N2E2_1933 0.39 +1.1 2,290,130 - Pf6N2E2_1933 0.39 -0.5 2,290,223 + Pf6N2E2_1933 0.49 +0.9 2,290,336 + Pf6N2E2_1933 0.61 -0.8 2,290,337 - Pf6N2E2_1933 0.61 +0.2 2,290,553 + Pf6N2E2_1933 0.84 -0.6
Or see this region's nucleotide sequence