Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1932

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1931 and Pf6N2E2_1932 are separated by 121 nucleotidesPf6N2E2_1932 and Pf6N2E2_1933 are separated by 202 nucleotides Pf6N2E2_1931 - Methyl-accepting chemotaxis protein, at 2,286,861 to 2,288,699 _1931 Pf6N2E2_1932 - Transcriptional regulator, IclR family, at 2,288,821 to 2,289,564 _1932 Pf6N2E2_1933 - TcuR: regulates tcuABC genes used in utilization of tricarballylate, at 2,289,767 to 2,290,699 _1933 Position (kb) 2288 2289 2290Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2287.832 kb on + strand, within Pf6N2E2_1931at 2287.833 kb on - strand, within Pf6N2E2_1931at 2287.833 kb on - strand, within Pf6N2E2_1931at 2287.849 kb on + strand, within Pf6N2E2_1931at 2287.849 kb on + strand, within Pf6N2E2_1931at 2287.850 kb on - strand, within Pf6N2E2_1931at 2288.412 kb on - strand, within Pf6N2E2_1931at 2288.961 kb on - strand, within Pf6N2E2_1932at 2288.961 kb on - strand, within Pf6N2E2_1932at 2289.014 kb on - strand, within Pf6N2E2_1932at 2289.149 kb on + strand, within Pf6N2E2_1932at 2289.149 kb on + strand, within Pf6N2E2_1932at 2289.149 kb on + strand, within Pf6N2E2_1932at 2289.150 kb on - strand, within Pf6N2E2_1932at 2289.150 kb on - strand, within Pf6N2E2_1932at 2289.150 kb on - strand, within Pf6N2E2_1932at 2289.150 kb on - strand, within Pf6N2E2_1932at 2289.150 kb on - strand, within Pf6N2E2_1932at 2289.150 kb on - strand, within Pf6N2E2_1932at 2289.150 kb on - strand, within Pf6N2E2_1932at 2289.429 kb on - strand, within Pf6N2E2_1932at 2289.609 kb on - strandat 2289.674 kb on - strandat 2289.674 kb on - strandat 2289.674 kb on - strandat 2289.676 kb on + strandat 2289.677 kb on - strandat 2289.677 kb on - strandat 2289.677 kb on - strandat 2289.677 kb on - strandat 2289.677 kb on - strandat 2289.823 kb on + strandat 2289.824 kb on - strandat 2289.824 kb on - strandat 2289.956 kb on - strand, within Pf6N2E2_1933at 2289.980 kb on - strand, within Pf6N2E2_1933at 2290.127 kb on + strand, within Pf6N2E2_1933at 2290.128 kb on - strand, within Pf6N2E2_1933at 2290.128 kb on - strand, within Pf6N2E2_1933at 2290.130 kb on - strand, within Pf6N2E2_1933at 2290.223 kb on + strand, within Pf6N2E2_1933at 2290.336 kb on + strand, within Pf6N2E2_1933at 2290.337 kb on - strand, within Pf6N2E2_1933at 2290.553 kb on + strand, within Pf6N2E2_1933

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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2,287,832 + Pf6N2E2_1931 0.53 -0.8
2,287,833 - Pf6N2E2_1931 0.53 +1.3
2,287,833 - Pf6N2E2_1931 0.53 +0.2
2,287,849 + Pf6N2E2_1931 0.54 +0.3
2,287,849 + Pf6N2E2_1931 0.54 +0.1
2,287,850 - Pf6N2E2_1931 0.54 +0.0
2,288,412 - Pf6N2E2_1931 0.84 +0.4
2,288,961 - Pf6N2E2_1932 0.19 -1.0
2,288,961 - Pf6N2E2_1932 0.19 -2.0
2,289,014 - Pf6N2E2_1932 0.26 -1.6
2,289,149 + Pf6N2E2_1932 0.44 -2.1
2,289,149 + Pf6N2E2_1932 0.44 -2.3
2,289,149 + Pf6N2E2_1932 0.44 -0.5
2,289,150 - Pf6N2E2_1932 0.44 -3.1
2,289,150 - Pf6N2E2_1932 0.44 -1.6
2,289,150 - Pf6N2E2_1932 0.44 -3.4
2,289,150 - Pf6N2E2_1932 0.44 -2.4
2,289,150 - Pf6N2E2_1932 0.44 -1.5
2,289,150 - Pf6N2E2_1932 0.44 -1.4
2,289,150 - Pf6N2E2_1932 0.44 +0.1
2,289,429 - Pf6N2E2_1932 0.82 -1.8
2,289,609 - +0.6
2,289,674 - -0.0
2,289,674 - -1.0
2,289,674 - +0.6
2,289,676 + +0.7
2,289,677 - -0.3
2,289,677 - +0.4
2,289,677 - -0.6
2,289,677 - +1.0
2,289,677 - +1.3
2,289,823 + +2.2
2,289,824 - -0.2
2,289,824 - -0.3
2,289,956 - Pf6N2E2_1933 0.20 +2.4
2,289,980 - Pf6N2E2_1933 0.23 -1.0
2,290,127 + Pf6N2E2_1933 0.39 +0.2
2,290,128 - Pf6N2E2_1933 0.39 -1.1
2,290,128 - Pf6N2E2_1933 0.39 +1.1
2,290,130 - Pf6N2E2_1933 0.39 -0.5
2,290,223 + Pf6N2E2_1933 0.49 +0.9
2,290,336 + Pf6N2E2_1933 0.61 -0.8
2,290,337 - Pf6N2E2_1933 0.61 +0.2
2,290,553 + Pf6N2E2_1933 0.84 -0.6

Or see this region's nucleotide sequence