Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1819 and Pf6N2E2_1820 are separated by 18 nucleotides Pf6N2E2_1820 and Pf6N2E2_1821 are separated by 64 nucleotides Pf6N2E2_1821 and Pf6N2E2_1822 are separated by 25 nucleotides
Pf6N2E2_1819 - 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7), at 2,152,551 to 2,153,567
_1819
Pf6N2E2_1820 - hypothetical protein, at 2,153,586 to 2,153,702
_1820
Pf6N2E2_1821 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 2,153,767 to 2,154,276
_1821
Pf6N2E2_1822 - sensor histidine kinase, at 2,154,302 to 2,158,021
_1822
Position (kb)
2153
2154
2155 Strain fitness (log2 ratio)
-1
0
1
2 at 2152.845 kb on - strand, within Pf6N2E2_1819 at 2152.994 kb on - strand, within Pf6N2E2_1819 at 2152.994 kb on - strand, within Pf6N2E2_1819 at 2153.190 kb on + strand, within Pf6N2E2_1819 at 2153.191 kb on - strand, within Pf6N2E2_1819 at 2153.239 kb on + strand, within Pf6N2E2_1819 at 2153.240 kb on - strand, within Pf6N2E2_1819 at 2153.398 kb on + strand, within Pf6N2E2_1819 at 2153.399 kb on - strand, within Pf6N2E2_1819 at 2153.465 kb on - strand, within Pf6N2E2_1819 at 2153.549 kb on + strand at 2153.585 kb on - strand at 2154.134 kb on - strand, within Pf6N2E2_1821 at 2154.199 kb on + strand, within Pf6N2E2_1821 at 2154.299 kb on + strand at 2154.311 kb on - strand at 2154.476 kb on - strand at 2154.533 kb on + strand at 2154.749 kb on + strand, within Pf6N2E2_1822 at 2154.750 kb on - strand, within Pf6N2E2_1822 at 2154.795 kb on + strand, within Pf6N2E2_1822 at 2154.795 kb on + strand, within Pf6N2E2_1822 at 2154.796 kb on - strand, within Pf6N2E2_1822 at 2154.796 kb on - strand, within Pf6N2E2_1822 at 2154.796 kb on - strand, within Pf6N2E2_1822 at 2155.133 kb on - strand, within Pf6N2E2_1822 at 2155.219 kb on + strand, within Pf6N2E2_1822
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 2,152,845 - Pf6N2E2_1819 0.29 +0.2 2,152,994 - Pf6N2E2_1819 0.44 -0.7 2,152,994 - Pf6N2E2_1819 0.44 +0.4 2,153,190 + Pf6N2E2_1819 0.63 -0.7 2,153,191 - Pf6N2E2_1819 0.63 -0.4 2,153,239 + Pf6N2E2_1819 0.68 +1.2 2,153,240 - Pf6N2E2_1819 0.68 +1.4 2,153,398 + Pf6N2E2_1819 0.83 +2.5 2,153,399 - Pf6N2E2_1819 0.83 +1.0 2,153,465 - Pf6N2E2_1819 0.90 -0.4 2,153,549 + +2.2 2,153,585 - +0.5 2,154,134 - Pf6N2E2_1821 0.72 -1.1 2,154,199 + Pf6N2E2_1821 0.85 -1.2 2,154,299 + -1.6 2,154,311 - -0.1 2,154,476 - +1.2 2,154,533 + +0.3 2,154,749 + Pf6N2E2_1822 0.12 +0.5 2,154,750 - Pf6N2E2_1822 0.12 +0.6 2,154,795 + Pf6N2E2_1822 0.13 +0.7 2,154,795 + Pf6N2E2_1822 0.13 +0.1 2,154,796 - Pf6N2E2_1822 0.13 -1.5 2,154,796 - Pf6N2E2_1822 0.13 -0.7 2,154,796 - Pf6N2E2_1822 0.13 -1.0 2,155,133 - Pf6N2E2_1822 0.22 -0.9 2,155,219 + Pf6N2E2_1822 0.25 +0.1
Or see this region's nucleotide sequence