Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1719 and Pf6N2E2_1720 overlap by 39 nucleotides Pf6N2E2_1720 and Pf6N2E2_1721 overlap by 4 nucleotides Pf6N2E2_1721 and Pf6N2E2_1722 overlap by 12 nucleotides Pf6N2E2_1722 and Pf6N2E2_1723 overlap by 8 nucleotides
Pf6N2E2_1719 - Transcriptional regulator, AraC family, at 2,028,501 to 2,029,514
_1719
Pf6N2E2_1720 - hypothetical protein, at 2,029,476 to 2,029,616
_1720
Pf6N2E2_1721 - hypothetical protein, at 2,029,613 to 2,029,729
_1721
Pf6N2E2_1722 - 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157), at 2,029,718 to 2,030,569
_1722
Pf6N2E2_1723 - Transcriptional regulator, TetR family, at 2,030,562 to 2,031,176
_1723
Position (kb)
2029
2030 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2028.876 kb on + strand, within Pf6N2E2_1719 at 2029.487 kb on - strand at 2029.514 kb on + strand at 2029.515 kb on - strand, within Pf6N2E2_1720 at 2029.515 kb on - strand, within Pf6N2E2_1720 at 2029.570 kb on + strand, within Pf6N2E2_1720 at 2029.571 kb on - strand, within Pf6N2E2_1720 at 2029.577 kb on + strand, within Pf6N2E2_1720 at 2029.614 kb on + strand at 2029.729 kb on + strand at 2029.729 kb on + strand at 2029.729 kb on + strand at 2029.729 kb on + strand at 2029.729 kb on + strand at 2029.730 kb on - strand at 2029.730 kb on - strand at 2029.730 kb on - strand at 2029.730 kb on - strand at 2029.730 kb on - strand at 2029.733 kb on - strand at 2030.459 kb on + strand, within Pf6N2E2_1722 at 2030.459 kb on + strand, within Pf6N2E2_1722 at 2030.459 kb on + strand, within Pf6N2E2_1722 at 2030.460 kb on - strand, within Pf6N2E2_1722 at 2030.460 kb on - strand, within Pf6N2E2_1722 at 2030.460 kb on - strand, within Pf6N2E2_1722 at 2030.460 kb on - strand, within Pf6N2E2_1722 at 2030.484 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 2,028,876 + Pf6N2E2_1719 0.37 +1.3 2,029,487 - +0.2 2,029,514 + -2.3 2,029,515 - Pf6N2E2_1720 0.28 -2.2 2,029,515 - Pf6N2E2_1720 0.28 -0.2 2,029,570 + Pf6N2E2_1720 0.67 -0.5 2,029,571 - Pf6N2E2_1720 0.67 -0.2 2,029,577 + Pf6N2E2_1720 0.72 -0.1 2,029,614 + -0.2 2,029,729 + -0.2 2,029,729 + +0.9 2,029,729 + +0.0 2,029,729 + +1.4 2,029,729 + -1.0 2,029,730 - +0.7 2,029,730 - +0.6 2,029,730 - -1.0 2,029,730 - -0.0 2,029,730 - +0.1 2,029,733 - +0.6 2,030,459 + Pf6N2E2_1722 0.87 +0.8 2,030,459 + Pf6N2E2_1722 0.87 +0.1 2,030,459 + Pf6N2E2_1722 0.87 +0.5 2,030,460 - Pf6N2E2_1722 0.87 +0.3 2,030,460 - Pf6N2E2_1722 0.87 -1.3 2,030,460 - Pf6N2E2_1722 0.87 -0.0 2,030,460 - Pf6N2E2_1722 0.87 -2.8 2,030,484 - -0.2
Or see this region's nucleotide sequence