Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1571

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1570 and Pf6N2E2_1571 are separated by 10 nucleotidesPf6N2E2_1571 and Pf6N2E2_1572 are separated by 136 nucleotides Pf6N2E2_1570 - Sll1359 protein, at 1,832,834 to 1,833,976 _1570 Pf6N2E2_1571 - FIG00966665: hypothetical protein, at 1,833,987 to 1,836,371 _1571 Pf6N2E2_1572 - hypothetical protein, at 1,836,508 to 1,837,428 _1572 Position (kb) 1833 1834 1835 1836 1837Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1833.077 kb on + strand, within Pf6N2E2_1570at 1833.108 kb on - strand, within Pf6N2E2_1570at 1833.108 kb on - strand, within Pf6N2E2_1570at 1833.164 kb on - strand, within Pf6N2E2_1570at 1833.187 kb on + strand, within Pf6N2E2_1570at 1833.270 kb on + strand, within Pf6N2E2_1570at 1833.308 kb on + strand, within Pf6N2E2_1570at 1833.329 kb on + strand, within Pf6N2E2_1570at 1833.461 kb on + strand, within Pf6N2E2_1570at 1833.462 kb on - strand, within Pf6N2E2_1570at 1833.476 kb on + strand, within Pf6N2E2_1570at 1833.476 kb on + strand, within Pf6N2E2_1570at 1833.477 kb on - strand, within Pf6N2E2_1570at 1833.497 kb on - strand, within Pf6N2E2_1570at 1833.500 kb on + strand, within Pf6N2E2_1570at 1833.512 kb on + strand, within Pf6N2E2_1570at 1833.513 kb on - strand, within Pf6N2E2_1570at 1833.596 kb on - strand, within Pf6N2E2_1570at 1833.596 kb on - strand, within Pf6N2E2_1570at 1833.599 kb on + strand, within Pf6N2E2_1570at 1833.599 kb on + strand, within Pf6N2E2_1570at 1833.599 kb on + strand, within Pf6N2E2_1570at 1833.599 kb on + strand, within Pf6N2E2_1570at 1833.600 kb on - strand, within Pf6N2E2_1570at 1833.600 kb on - strand, within Pf6N2E2_1570at 1833.600 kb on - strand, within Pf6N2E2_1570at 1833.600 kb on - strand, within Pf6N2E2_1570at 1833.714 kb on - strand, within Pf6N2E2_1570at 1833.754 kb on - strand, within Pf6N2E2_1570at 1833.995 kb on - strandat 1834.011 kb on - strandat 1834.015 kb on - strandat 1834.015 kb on - strandat 1834.028 kb on + strandat 1834.029 kb on - strandat 1834.029 kb on - strandat 1834.029 kb on - strandat 1834.068 kb on + strandat 1834.078 kb on - strandat 1834.203 kb on + strandat 1834.204 kb on - strandat 1834.204 kb on - strandat 1834.206 kb on - strandat 1834.206 kb on - strandat 1834.206 kb on - strandat 1834.206 kb on - strandat 1834.206 kb on - strandat 1834.216 kb on + strandat 1834.248 kb on + strand, within Pf6N2E2_1571at 1834.248 kb on + strand, within Pf6N2E2_1571at 1834.248 kb on + strand, within Pf6N2E2_1571at 1834.248 kb on + strand, within Pf6N2E2_1571at 1834.249 kb on - strand, within Pf6N2E2_1571at 1834.249 kb on - strand, within Pf6N2E2_1571at 1834.249 kb on - strand, within Pf6N2E2_1571at 1834.249 kb on - strand, within Pf6N2E2_1571at 1834.249 kb on - strand, within Pf6N2E2_1571at 1834.249 kb on - strand, within Pf6N2E2_1571at 1834.303 kb on - strand, within Pf6N2E2_1571at 1834.303 kb on - strand, within Pf6N2E2_1571at 1834.303 kb on - strand, within Pf6N2E2_1571at 1834.353 kb on + strand, within Pf6N2E2_1571at 1834.354 kb on - strand, within Pf6N2E2_1571at 1834.354 kb on - strand, within Pf6N2E2_1571at 1834.479 kb on + strandat 1834.593 kb on + strand, within Pf6N2E2_1571at 1834.593 kb on + strand, within Pf6N2E2_1571at 1834.593 kb on + strand, within Pf6N2E2_1571at 1834.593 kb on + strand, within Pf6N2E2_1571at 1834.593 kb on + strand, within Pf6N2E2_1571at 1834.593 kb on + strand, within Pf6N2E2_1571at 1834.594 kb on - strand, within Pf6N2E2_1571at 1834.594 kb on - strand, within Pf6N2E2_1571at 1834.594 kb on - strand, within Pf6N2E2_1571at 1834.594 kb on - strand, within Pf6N2E2_1571at 1834.594 kb on - strand, within Pf6N2E2_1571at 1834.731 kb on + strand, within Pf6N2E2_1571at 1834.732 kb on - strand, within Pf6N2E2_1571at 1834.777 kb on - strand, within Pf6N2E2_1571at 1834.777 kb on - strand, within Pf6N2E2_1571at 1834.969 kb on + strandat 1835.033 kb on + strand, within Pf6N2E2_1571at 1835.080 kb on - strand, within Pf6N2E2_1571at 1835.137 kb on - strand, within Pf6N2E2_1571at 1835.200 kb on - strand, within Pf6N2E2_1571at 1835.201 kb on + strand, within Pf6N2E2_1571at 1835.202 kb on - strand, within Pf6N2E2_1571at 1835.202 kb on - strand, within Pf6N2E2_1571at 1835.202 kb on - strand, within Pf6N2E2_1571at 1835.272 kb on + strand, within Pf6N2E2_1571at 1835.273 kb on - strand, within Pf6N2E2_1571at 1835.485 kb on - strand, within Pf6N2E2_1571at 1835.485 kb on - strand, within Pf6N2E2_1571at 1835.485 kb on - strand, within Pf6N2E2_1571at 1835.485 kb on - strand, within Pf6N2E2_1571at 1835.506 kb on - strand, within Pf6N2E2_1571at 1835.622 kb on + strand, within Pf6N2E2_1571at 1835.623 kb on - strand, within Pf6N2E2_1571at 1835.776 kb on - strand, within Pf6N2E2_1571at 1835.823 kb on + strand, within Pf6N2E2_1571at 1835.823 kb on + strand, within Pf6N2E2_1571at 1835.824 kb on - strand, within Pf6N2E2_1571at 1835.824 kb on - strand, within Pf6N2E2_1571at 1835.829 kb on + strand, within Pf6N2E2_1571at 1835.829 kb on + strand, within Pf6N2E2_1571at 1835.829 kb on + strand, within Pf6N2E2_1571at 1835.829 kb on + strand, within Pf6N2E2_1571at 1835.829 kb on + strand, within Pf6N2E2_1571at 1835.830 kb on - strand, within Pf6N2E2_1571at 1835.830 kb on - strand, within Pf6N2E2_1571at 1835.830 kb on - strand, within Pf6N2E2_1571at 1835.830 kb on - strand, within Pf6N2E2_1571at 1835.830 kb on - strand, within Pf6N2E2_1571at 1835.830 kb on - strand, within Pf6N2E2_1571at 1835.830 kb on - strand, within Pf6N2E2_1571at 1835.830 kb on - strand, within Pf6N2E2_1571at 1835.830 kb on - strand, within Pf6N2E2_1571at 1835.830 kb on - strand, within Pf6N2E2_1571at 1835.830 kb on - strand, within Pf6N2E2_1571at 1835.973 kb on + strand, within Pf6N2E2_1571at 1835.974 kb on - strand, within Pf6N2E2_1571at 1835.974 kb on - strand, within Pf6N2E2_1571at 1835.974 kb on - strand, within Pf6N2E2_1571at 1835.974 kb on - strand, within Pf6N2E2_1571at 1836.042 kb on + strand, within Pf6N2E2_1571at 1836.042 kb on + strand, within Pf6N2E2_1571at 1836.042 kb on + strand, within Pf6N2E2_1571at 1836.043 kb on - strand, within Pf6N2E2_1571at 1836.043 kb on - strand, within Pf6N2E2_1571at 1836.058 kb on - strand, within Pf6N2E2_1571at 1836.126 kb on + strand, within Pf6N2E2_1571at 1836.127 kb on - strand, within Pf6N2E2_1571at 1836.127 kb on - strand, within Pf6N2E2_1571at 1836.127 kb on - strand, within Pf6N2E2_1571at 1836.127 kb on - strand, within Pf6N2E2_1571at 1836.127 kb on - strand, within Pf6N2E2_1571at 1836.127 kb on - strand, within Pf6N2E2_1571at 1836.129 kb on + strand, within Pf6N2E2_1571at 1836.129 kb on + strand, within Pf6N2E2_1571at 1836.129 kb on + strand, within Pf6N2E2_1571at 1836.129 kb on + strand, within Pf6N2E2_1571at 1836.130 kb on - strand, within Pf6N2E2_1571at 1836.136 kb on - strandat 1836.153 kb on + strandat 1836.153 kb on + strandat 1836.153 kb on + strandat 1836.154 kb on - strandat 1836.154 kb on - strandat 1836.154 kb on - strandat 1836.534 kb on - strandat 1836.534 kb on - strandat 1836.534 kb on - strandat 1836.593 kb on - strandat 1836.613 kb on - strand, within Pf6N2E2_1572at 1836.722 kb on - strand, within Pf6N2E2_1572at 1836.740 kb on - strand, within Pf6N2E2_1572at 1836.797 kb on - strand, within Pf6N2E2_1572at 1836.820 kb on + strand, within Pf6N2E2_1572at 1836.820 kb on + strand, within Pf6N2E2_1572at 1836.821 kb on - strand, within Pf6N2E2_1572at 1836.824 kb on - strand, within Pf6N2E2_1572at 1836.835 kb on + strand, within Pf6N2E2_1572at 1836.835 kb on + strand, within Pf6N2E2_1572at 1836.837 kb on + strand, within Pf6N2E2_1572at 1836.838 kb on - strand, within Pf6N2E2_1572at 1836.838 kb on - strand, within Pf6N2E2_1572at 1836.881 kb on - strand, within Pf6N2E2_1572at 1836.890 kb on - strand, within Pf6N2E2_1572at 1836.926 kb on - strand, within Pf6N2E2_1572at 1836.926 kb on - strand, within Pf6N2E2_1572at 1836.926 kb on - strand, within Pf6N2E2_1572at 1836.961 kb on + strand, within Pf6N2E2_1572at 1836.961 kb on + strand, within Pf6N2E2_1572at 1837.265 kb on - strand, within Pf6N2E2_1572

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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1,833,077 + Pf6N2E2_1570 0.21 +0.4
1,833,108 - Pf6N2E2_1570 0.24 -0.3
1,833,108 - Pf6N2E2_1570 0.24 -0.4
1,833,164 - Pf6N2E2_1570 0.29 -0.5
1,833,187 + Pf6N2E2_1570 0.31 +0.5
1,833,270 + Pf6N2E2_1570 0.38 -2.3
1,833,308 + Pf6N2E2_1570 0.41 -0.8
1,833,329 + Pf6N2E2_1570 0.43 -1.2
1,833,461 + Pf6N2E2_1570 0.55 -0.9
1,833,462 - Pf6N2E2_1570 0.55 +0.2
1,833,476 + Pf6N2E2_1570 0.56 -0.4
1,833,476 + Pf6N2E2_1570 0.56 -0.2
1,833,477 - Pf6N2E2_1570 0.56 +0.4
1,833,497 - Pf6N2E2_1570 0.58 -0.8
1,833,500 + Pf6N2E2_1570 0.58 +0.1
1,833,512 + Pf6N2E2_1570 0.59 -0.4
1,833,513 - Pf6N2E2_1570 0.59 -0.2
1,833,596 - Pf6N2E2_1570 0.67 -2.4
1,833,596 - Pf6N2E2_1570 0.67 +0.5
1,833,599 + Pf6N2E2_1570 0.67 -0.3
1,833,599 + Pf6N2E2_1570 0.67 -0.4
1,833,599 + Pf6N2E2_1570 0.67 +0.7
1,833,599 + Pf6N2E2_1570 0.67 -0.2
1,833,600 - Pf6N2E2_1570 0.67 +0.1
1,833,600 - Pf6N2E2_1570 0.67 +0.4
1,833,600 - Pf6N2E2_1570 0.67 +0.2
1,833,600 - Pf6N2E2_1570 0.67 +0.2
1,833,714 - Pf6N2E2_1570 0.77 -0.9
1,833,754 - Pf6N2E2_1570 0.80 -0.8
1,833,995 - -1.2
1,834,011 - +0.1
1,834,015 - +0.7
1,834,015 - +1.0
1,834,028 + +0.6
1,834,029 - +0.1
1,834,029 - -0.5
1,834,029 - +0.6
1,834,068 + -0.5
1,834,078 - +0.1
1,834,203 + +1.6
1,834,204 - -0.1
1,834,204 - +0.1
1,834,206 - -0.2
1,834,206 - +0.7
1,834,206 - -0.4
1,834,206 - +3.5
1,834,206 - +0.9
1,834,216 + +1.1
1,834,248 + Pf6N2E2_1571 0.11 -0.2
1,834,248 + Pf6N2E2_1571 0.11 +0.9
1,834,248 + Pf6N2E2_1571 0.11 +0.9
1,834,248 + Pf6N2E2_1571 0.11 +0.6
1,834,249 - Pf6N2E2_1571 0.11 -0.4
1,834,249 - Pf6N2E2_1571 0.11 +0.5
1,834,249 - Pf6N2E2_1571 0.11 -2.4
1,834,249 - Pf6N2E2_1571 0.11 +1.1
1,834,249 - Pf6N2E2_1571 0.11 -0.7
1,834,249 - Pf6N2E2_1571 0.11 -0.6
1,834,303 - Pf6N2E2_1571 0.13 +1.3
1,834,303 - Pf6N2E2_1571 0.13 -1.0
1,834,303 - Pf6N2E2_1571 0.13 -0.3
1,834,353 + Pf6N2E2_1571 0.15 -0.5
1,834,354 - Pf6N2E2_1571 0.15 -2.1
1,834,354 - Pf6N2E2_1571 0.15 +0.1
1,834,479 + +4.0
1,834,593 + Pf6N2E2_1571 0.25 +0.5
1,834,593 + Pf6N2E2_1571 0.25 -0.3
1,834,593 + Pf6N2E2_1571 0.25 -0.3
1,834,593 + Pf6N2E2_1571 0.25 -2.1
1,834,593 + Pf6N2E2_1571 0.25 -0.0
1,834,593 + Pf6N2E2_1571 0.25 -0.2
1,834,594 - Pf6N2E2_1571 0.25 -0.4
1,834,594 - Pf6N2E2_1571 0.25 -0.3
1,834,594 - Pf6N2E2_1571 0.25 +0.3
1,834,594 - Pf6N2E2_1571 0.25 +2.2
1,834,594 - Pf6N2E2_1571 0.25 +0.6
1,834,731 + Pf6N2E2_1571 0.31 -0.6
1,834,732 - Pf6N2E2_1571 0.31 +1.4
1,834,777 - Pf6N2E2_1571 0.33 +0.9
1,834,777 - Pf6N2E2_1571 0.33 +1.1
1,834,969 + +0.6
1,835,033 + Pf6N2E2_1571 0.44 +0.6
1,835,080 - Pf6N2E2_1571 0.46 -0.8
1,835,137 - Pf6N2E2_1571 0.48 +1.9
1,835,200 - Pf6N2E2_1571 0.51 +2.0
1,835,201 + Pf6N2E2_1571 0.51 +0.1
1,835,202 - Pf6N2E2_1571 0.51 -1.4
1,835,202 - Pf6N2E2_1571 0.51 +0.6
1,835,202 - Pf6N2E2_1571 0.51 +1.0
1,835,272 + Pf6N2E2_1571 0.54 -0.2
1,835,273 - Pf6N2E2_1571 0.54 -0.2
1,835,485 - Pf6N2E2_1571 0.63 -0.9
1,835,485 - Pf6N2E2_1571 0.63 -0.4
1,835,485 - Pf6N2E2_1571 0.63 -0.6
1,835,485 - Pf6N2E2_1571 0.63 +1.6
1,835,506 - Pf6N2E2_1571 0.64 -0.9
1,835,622 + Pf6N2E2_1571 0.69 +1.4
1,835,623 - Pf6N2E2_1571 0.69 -1.6
1,835,776 - Pf6N2E2_1571 0.75 -0.5
1,835,823 + Pf6N2E2_1571 0.77 +0.4
1,835,823 + Pf6N2E2_1571 0.77 -0.4
1,835,824 - Pf6N2E2_1571 0.77 +1.1
1,835,824 - Pf6N2E2_1571 0.77 +0.3
1,835,829 + Pf6N2E2_1571 0.77 +0.1
1,835,829 + Pf6N2E2_1571 0.77 +1.6
1,835,829 + Pf6N2E2_1571 0.77 -0.9
1,835,829 + Pf6N2E2_1571 0.77 -0.1
1,835,829 + Pf6N2E2_1571 0.77 +0.2
1,835,830 - Pf6N2E2_1571 0.77 +0.3
1,835,830 - Pf6N2E2_1571 0.77 +0.8
1,835,830 - Pf6N2E2_1571 0.77 -0.2
1,835,830 - Pf6N2E2_1571 0.77 +0.5
1,835,830 - Pf6N2E2_1571 0.77 +0.6
1,835,830 - Pf6N2E2_1571 0.77 +0.1
1,835,830 - Pf6N2E2_1571 0.77 +1.2
1,835,830 - Pf6N2E2_1571 0.77 -0.1
1,835,830 - Pf6N2E2_1571 0.77 -0.6
1,835,830 - Pf6N2E2_1571 0.77 +0.4
1,835,830 - Pf6N2E2_1571 0.77 -0.1
1,835,973 + Pf6N2E2_1571 0.83 +0.6
1,835,974 - Pf6N2E2_1571 0.83 -0.4
1,835,974 - Pf6N2E2_1571 0.83 +0.9
1,835,974 - Pf6N2E2_1571 0.83 -1.4
1,835,974 - Pf6N2E2_1571 0.83 -0.6
1,836,042 + Pf6N2E2_1571 0.86 +0.2
1,836,042 + Pf6N2E2_1571 0.86 -0.2
1,836,042 + Pf6N2E2_1571 0.86 +0.2
1,836,043 - Pf6N2E2_1571 0.86 +0.2
1,836,043 - Pf6N2E2_1571 0.86 +0.7
1,836,058 - Pf6N2E2_1571 0.87 +0.6
1,836,126 + Pf6N2E2_1571 0.90 -0.8
1,836,127 - Pf6N2E2_1571 0.90 +0.5
1,836,127 - Pf6N2E2_1571 0.90 +0.3
1,836,127 - Pf6N2E2_1571 0.90 +0.5
1,836,127 - Pf6N2E2_1571 0.90 +0.2
1,836,127 - Pf6N2E2_1571 0.90 -0.2
1,836,127 - Pf6N2E2_1571 0.90 +0.1
1,836,129 + Pf6N2E2_1571 0.90 +1.7
1,836,129 + Pf6N2E2_1571 0.90 +0.6
1,836,129 + Pf6N2E2_1571 0.90 +0.6
1,836,129 + Pf6N2E2_1571 0.90 -0.9
1,836,130 - Pf6N2E2_1571 0.90 -0.2
1,836,136 - +0.3
1,836,153 + +0.5
1,836,153 + -1.6
1,836,153 + +0.8
1,836,154 - -0.6
1,836,154 - +0.9
1,836,154 - +0.7
1,836,534 - -0.2
1,836,534 - +0.2
1,836,534 - -0.3
1,836,593 - -0.9
1,836,613 - Pf6N2E2_1572 0.11 +0.4
1,836,722 - Pf6N2E2_1572 0.23 +2.3
1,836,740 - Pf6N2E2_1572 0.25 -0.2
1,836,797 - Pf6N2E2_1572 0.31 +0.3
1,836,820 + Pf6N2E2_1572 0.34 -0.3
1,836,820 + Pf6N2E2_1572 0.34 -0.1
1,836,821 - Pf6N2E2_1572 0.34 +0.8
1,836,824 - Pf6N2E2_1572 0.34 -1.0
1,836,835 + Pf6N2E2_1572 0.36 +0.2
1,836,835 + Pf6N2E2_1572 0.36 +0.7
1,836,837 + Pf6N2E2_1572 0.36 +0.1
1,836,838 - Pf6N2E2_1572 0.36 +0.1
1,836,838 - Pf6N2E2_1572 0.36 +0.9
1,836,881 - Pf6N2E2_1572 0.40 +0.7
1,836,890 - Pf6N2E2_1572 0.41 +0.4
1,836,926 - Pf6N2E2_1572 0.45 -0.9
1,836,926 - Pf6N2E2_1572 0.45 +0.2
1,836,926 - Pf6N2E2_1572 0.45 +0.4
1,836,961 + Pf6N2E2_1572 0.49 +0.5
1,836,961 + Pf6N2E2_1572 0.49 -0.3
1,837,265 - Pf6N2E2_1572 0.82 -1.9

Or see this region's nucleotide sequence