Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_146

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_145 and Pf6N2E2_146 are separated by 235 nucleotidesPf6N2E2_146 and Pf6N2E2_147 are separated by 4 nucleotides Pf6N2E2_145 - putative exported protein, at 197,183 to 200,836 _145 Pf6N2E2_146 - Transcriptional regulator, MarR family, at 201,072 to 201,554 _146 Pf6N2E2_147 - Outer membrane component of tripartite multidrug resistance system, at 201,559 to 203,013 _147 Position (kb) 201 202Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 200.363 kb on + strand, within Pf6N2E2_145at 200.363 kb on + strand, within Pf6N2E2_145at 200.492 kb on + strandat 200.493 kb on - strandat 200.608 kb on + strandat 200.754 kb on - strandat 200.774 kb on + strandat 200.774 kb on + strandat 200.775 kb on - strandat 200.775 kb on - strandat 200.819 kb on + strandat 200.819 kb on + strandat 200.819 kb on + strandat 200.820 kb on - strandat 200.820 kb on - strandat 200.820 kb on - strandat 200.820 kb on - strandat 200.820 kb on - strandat 200.820 kb on - strandat 200.834 kb on + strandat 200.835 kb on - strandat 200.835 kb on - strandat 200.881 kb on - strandat 200.959 kb on + strandat 200.959 kb on + strandat 200.960 kb on - strandat 200.960 kb on - strandat 200.960 kb on - strandat 200.977 kb on + strandat 200.993 kb on - strandat 200.996 kb on + strandat 200.997 kb on - strandat 200.997 kb on - strandat 201.018 kb on + strandat 201.039 kb on - strandat 201.039 kb on - strandat 201.039 kb on - strandat 201.039 kb on - strandat 201.052 kb on - strandat 201.167 kb on + strand, within Pf6N2E2_146at 201.167 kb on + strand, within Pf6N2E2_146at 201.552 kb on + strandat 201.552 kb on + strandat 201.553 kb on - strandat 201.553 kb on - strandat 201.616 kb on + strandat 201.838 kb on + strand, within Pf6N2E2_147at 201.839 kb on - strand, within Pf6N2E2_147at 201.940 kb on + strand, within Pf6N2E2_147at 201.940 kb on + strand, within Pf6N2E2_147at 201.940 kb on + strand, within Pf6N2E2_147at 201.941 kb on - strand, within Pf6N2E2_147at 201.941 kb on - strand, within Pf6N2E2_147at 201.941 kb on - strand, within Pf6N2E2_147at 201.960 kb on - strand, within Pf6N2E2_147at 201.960 kb on - strand, within Pf6N2E2_147at 201.976 kb on + strand, within Pf6N2E2_147at 201.976 kb on + strand, within Pf6N2E2_147at 201.976 kb on + strand, within Pf6N2E2_147at 201.976 kb on + strand, within Pf6N2E2_147at 201.977 kb on - strand, within Pf6N2E2_147at 201.977 kb on - strand, within Pf6N2E2_147at 202.100 kb on - strand, within Pf6N2E2_147at 202.125 kb on + strand, within Pf6N2E2_147at 202.125 kb on + strand, within Pf6N2E2_147at 202.125 kb on + strand, within Pf6N2E2_147at 202.125 kb on + strand, within Pf6N2E2_147at 202.126 kb on - strand, within Pf6N2E2_147at 202.126 kb on - strand, within Pf6N2E2_147at 202.126 kb on - strand, within Pf6N2E2_147at 202.126 kb on - strand, within Pf6N2E2_147at 202.126 kb on - strand, within Pf6N2E2_147at 202.126 kb on - strand, within Pf6N2E2_147at 202.126 kb on - strand, within Pf6N2E2_147at 202.129 kb on + strand, within Pf6N2E2_147at 202.129 kb on + strand, within Pf6N2E2_147at 202.129 kb on + strand, within Pf6N2E2_147at 202.129 kb on + strand, within Pf6N2E2_147at 202.130 kb on - strand, within Pf6N2E2_147at 202.217 kb on - strand, within Pf6N2E2_147at 202.498 kb on + strand, within Pf6N2E2_147

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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200,363 + Pf6N2E2_145 0.87 +0.3
200,363 + Pf6N2E2_145 0.87 -0.3
200,492 + -0.6
200,493 - +0.9
200,608 + -0.3
200,754 - +1.7
200,774 + -0.4
200,774 + -0.1
200,775 - -0.8
200,775 - +0.6
200,819 + +0.1
200,819 + +0.0
200,819 + -0.1
200,820 - +0.2
200,820 - +0.7
200,820 - -0.9
200,820 - +0.5
200,820 - +0.7
200,820 - -0.0
200,834 + -1.7
200,835 - +0.7
200,835 - +0.2
200,881 - -1.1
200,959 + -2.6
200,959 + -2.5
200,960 - +0.0
200,960 - -0.2
200,960 - +0.2
200,977 + -0.7
200,993 - -0.6
200,996 + -0.4
200,997 - +0.1
200,997 - +0.0
201,018 + -3.8
201,039 - +1.4
201,039 - -1.3
201,039 - +0.0
201,039 - +0.0
201,052 - +0.4
201,167 + Pf6N2E2_146 0.20 -2.6
201,167 + Pf6N2E2_146 0.20 -0.2
201,552 + +0.9
201,552 + +0.8
201,553 - -0.7
201,553 - +1.6
201,616 + -0.5
201,838 + Pf6N2E2_147 0.19 -0.1
201,839 - Pf6N2E2_147 0.19 -0.7
201,940 + Pf6N2E2_147 0.26 +0.3
201,940 + Pf6N2E2_147 0.26 +1.6
201,940 + Pf6N2E2_147 0.26 +0.2
201,941 - Pf6N2E2_147 0.26 -0.0
201,941 - Pf6N2E2_147 0.26 -1.0
201,941 - Pf6N2E2_147 0.26 +0.9
201,960 - Pf6N2E2_147 0.28 +0.5
201,960 - Pf6N2E2_147 0.28 +1.3
201,976 + Pf6N2E2_147 0.29 -1.2
201,976 + Pf6N2E2_147 0.29 +1.6
201,976 + Pf6N2E2_147 0.29 +1.9
201,976 + Pf6N2E2_147 0.29 -1.2
201,977 - Pf6N2E2_147 0.29 -0.5
201,977 - Pf6N2E2_147 0.29 +1.7
202,100 - Pf6N2E2_147 0.37 -0.3
202,125 + Pf6N2E2_147 0.39 +0.5
202,125 + Pf6N2E2_147 0.39 -0.3
202,125 + Pf6N2E2_147 0.39 +0.4
202,125 + Pf6N2E2_147 0.39 -2.0
202,126 - Pf6N2E2_147 0.39 +0.3
202,126 - Pf6N2E2_147 0.39 +0.6
202,126 - Pf6N2E2_147 0.39 +0.1
202,126 - Pf6N2E2_147 0.39 +0.6
202,126 - Pf6N2E2_147 0.39 +0.5
202,126 - Pf6N2E2_147 0.39 -0.4
202,126 - Pf6N2E2_147 0.39 +0.3
202,129 + Pf6N2E2_147 0.39 -1.4
202,129 + Pf6N2E2_147 0.39 -0.1
202,129 + Pf6N2E2_147 0.39 -0.6
202,129 + Pf6N2E2_147 0.39 -0.1
202,130 - Pf6N2E2_147 0.39 -0.2
202,217 - Pf6N2E2_147 0.45 +0.9
202,498 + Pf6N2E2_147 0.65 -1.1

Or see this region's nucleotide sequence