Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1400 and Pf6N2E2_1401 overlap by 32 nucleotides Pf6N2E2_1401 and Pf6N2E2_1402 are separated by 15 nucleotides Pf6N2E2_1402 and Pf6N2E2_1403 are separated by 119 nucleotides Pf6N2E2_1403 and Pf6N2E2_1404 are separated by 30 nucleotides
Pf6N2E2_1400 - Sensory box histidine kinase/response regulator, at 1,639,634 to 1,642,234
_1400
Pf6N2E2_1401 - FIG00955631: hypothetical protein, at 1,642,203 to 1,643,366
_1401
Pf6N2E2_1402 - hypothetical protein, at 1,643,382 to 1,643,579
_1402
Pf6N2E2_1403 - Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL, at 1,643,699 to 1,644,226
_1403
Pf6N2E2_1404 - Nitrous oxide reductase maturation transmembrane protein NosY, at 1,644,257 to 1,645,087
_1404
Position (kb)
1642
1643
1644 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5
6 at 1641.204 kb on + strand, within Pf6N2E2_1400 at 1641.661 kb on + strand, within Pf6N2E2_1400 at 1641.735 kb on + strand, within Pf6N2E2_1400 at 1641.736 kb on - strand, within Pf6N2E2_1400 at 1642.112 kb on + strand at 1642.262 kb on + strand at 1642.263 kb on - strand at 1642.288 kb on + strand at 1642.288 kb on + strand at 1642.289 kb on - strand at 1642.289 kb on - strand at 1642.511 kb on - strand, within Pf6N2E2_1401 at 1642.511 kb on - strand, within Pf6N2E2_1401 at 1642.511 kb on - strand, within Pf6N2E2_1401 at 1642.511 kb on - strand, within Pf6N2E2_1401 at 1642.511 kb on - strand, within Pf6N2E2_1401 at 1642.558 kb on + strand, within Pf6N2E2_1401 at 1642.558 kb on + strand, within Pf6N2E2_1401 at 1642.558 kb on + strand, within Pf6N2E2_1401 at 1642.558 kb on + strand, within Pf6N2E2_1401 at 1642.558 kb on + strand, within Pf6N2E2_1401 at 1642.558 kb on + strand, within Pf6N2E2_1401 at 1642.559 kb on - strand, within Pf6N2E2_1401 at 1642.559 kb on - strand, within Pf6N2E2_1401 at 1642.561 kb on + strand, within Pf6N2E2_1401 at 1642.648 kb on + strand, within Pf6N2E2_1401 at 1642.648 kb on + strand, within Pf6N2E2_1401 at 1642.649 kb on - strand, within Pf6N2E2_1401 at 1642.682 kb on - strand, within Pf6N2E2_1401 at 1642.829 kb on - strand, within Pf6N2E2_1401 at 1642.849 kb on + strand, within Pf6N2E2_1401 at 1642.850 kb on - strand, within Pf6N2E2_1401 at 1642.850 kb on - strand, within Pf6N2E2_1401 at 1643.230 kb on + strand, within Pf6N2E2_1401 at 1643.231 kb on - strand, within Pf6N2E2_1401 at 1643.406 kb on - strand, within Pf6N2E2_1402 at 1643.406 kb on - strand, within Pf6N2E2_1402 at 1643.428 kb on + strand, within Pf6N2E2_1402 at 1643.428 kb on + strand, within Pf6N2E2_1402 at 1643.428 kb on + strand, within Pf6N2E2_1402 at 1643.428 kb on + strand, within Pf6N2E2_1402 at 1643.428 kb on + strand, within Pf6N2E2_1402 at 1643.429 kb on - strand, within Pf6N2E2_1402 at 1643.429 kb on - strand, within Pf6N2E2_1402 at 1643.429 kb on - strand, within Pf6N2E2_1402 at 1643.429 kb on - strand, within Pf6N2E2_1402 at 1643.429 kb on - strand, within Pf6N2E2_1402 at 1643.433 kb on + strand, within Pf6N2E2_1402 at 1643.433 kb on + strand, within Pf6N2E2_1402 at 1643.434 kb on - strand, within Pf6N2E2_1402 at 1643.434 kb on - strand, within Pf6N2E2_1402 at 1643.434 kb on - strand, within Pf6N2E2_1402 at 1643.434 kb on - strand, within Pf6N2E2_1402 at 1643.520 kb on + strand, within Pf6N2E2_1402 at 1643.521 kb on - strand, within Pf6N2E2_1402 at 1643.874 kb on + strand, within Pf6N2E2_1403 at 1643.946 kb on + strand, within Pf6N2E2_1403 at 1643.946 kb on + strand, within Pf6N2E2_1403 at 1643.947 kb on - strand, within Pf6N2E2_1403 at 1643.947 kb on - strand, within Pf6N2E2_1403 at 1643.947 kb on - strand, within Pf6N2E2_1403 at 1644.213 kb on + strand at 1644.213 kb on + strand at 1644.214 kb on - strand at 1644.214 kb on - strand at 1644.214 kb on - strand at 1644.314 kb on + strand at 1644.315 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 1,641,204 + Pf6N2E2_1400 0.60 -0.4 1,641,661 + Pf6N2E2_1400 0.78 -1.4 1,641,735 + Pf6N2E2_1400 0.81 -2.3 1,641,736 - Pf6N2E2_1400 0.81 -1.2 1,642,112 + -0.7 1,642,262 + -2.6 1,642,263 - +4.8 1,642,288 + +0.8 1,642,288 + -3.3 1,642,289 - +5.5 1,642,289 - +6.0 1,642,511 - Pf6N2E2_1401 0.26 +0.2 1,642,511 - Pf6N2E2_1401 0.26 -3.3 1,642,511 - Pf6N2E2_1401 0.26 -1.6 1,642,511 - Pf6N2E2_1401 0.26 -0.7 1,642,511 - Pf6N2E2_1401 0.26 -3.0 1,642,558 + Pf6N2E2_1401 0.30 -2.5 1,642,558 + Pf6N2E2_1401 0.30 -2.0 1,642,558 + Pf6N2E2_1401 0.30 -0.8 1,642,558 + Pf6N2E2_1401 0.30 -2.1 1,642,558 + Pf6N2E2_1401 0.30 -2.5 1,642,558 + Pf6N2E2_1401 0.30 -2.7 1,642,559 - Pf6N2E2_1401 0.31 -1.7 1,642,559 - Pf6N2E2_1401 0.31 -2.5 1,642,561 + Pf6N2E2_1401 0.31 -2.0 1,642,648 + Pf6N2E2_1401 0.38 -1.9 1,642,648 + Pf6N2E2_1401 0.38 -4.0 1,642,649 - Pf6N2E2_1401 0.38 -2.5 1,642,682 - Pf6N2E2_1401 0.41 -1.2 1,642,829 - Pf6N2E2_1401 0.54 -2.6 1,642,849 + Pf6N2E2_1401 0.55 -3.1 1,642,850 - Pf6N2E2_1401 0.56 -1.7 1,642,850 - Pf6N2E2_1401 0.56 -2.4 1,643,230 + Pf6N2E2_1401 0.88 -1.2 1,643,231 - Pf6N2E2_1401 0.88 -2.3 1,643,406 - Pf6N2E2_1402 0.12 -2.8 1,643,406 - Pf6N2E2_1402 0.12 -3.0 1,643,428 + Pf6N2E2_1402 0.23 -0.9 1,643,428 + Pf6N2E2_1402 0.23 -0.2 1,643,428 + Pf6N2E2_1402 0.23 -2.3 1,643,428 + Pf6N2E2_1402 0.23 -3.5 1,643,428 + Pf6N2E2_1402 0.23 -2.0 1,643,429 - Pf6N2E2_1402 0.24 -2.6 1,643,429 - Pf6N2E2_1402 0.24 -2.4 1,643,429 - Pf6N2E2_1402 0.24 -2.5 1,643,429 - Pf6N2E2_1402 0.24 -1.9 1,643,429 - Pf6N2E2_1402 0.24 -1.7 1,643,433 + Pf6N2E2_1402 0.26 -1.9 1,643,433 + Pf6N2E2_1402 0.26 -1.6 1,643,434 - Pf6N2E2_1402 0.26 -3.7 1,643,434 - Pf6N2E2_1402 0.26 -2.3 1,643,434 - Pf6N2E2_1402 0.26 -3.2 1,643,434 - Pf6N2E2_1402 0.26 -3.1 1,643,520 + Pf6N2E2_1402 0.70 +0.0 1,643,521 - Pf6N2E2_1402 0.70 -1.3 1,643,874 + Pf6N2E2_1403 0.33 -0.5 1,643,946 + Pf6N2E2_1403 0.47 -0.4 1,643,946 + Pf6N2E2_1403 0.47 +0.8 1,643,947 - Pf6N2E2_1403 0.47 -0.6 1,643,947 - Pf6N2E2_1403 0.47 -0.2 1,643,947 - Pf6N2E2_1403 0.47 -1.4 1,644,213 + +1.0 1,644,213 + +1.0 1,644,214 - +1.1 1,644,214 - -1.4 1,644,214 - -0.6 1,644,314 + +0.6 1,644,315 - +1.2
Or see this region's nucleotide sequence