Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1401

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1400 and Pf6N2E2_1401 overlap by 32 nucleotidesPf6N2E2_1401 and Pf6N2E2_1402 are separated by 15 nucleotidesPf6N2E2_1402 and Pf6N2E2_1403 are separated by 119 nucleotidesPf6N2E2_1403 and Pf6N2E2_1404 are separated by 30 nucleotides Pf6N2E2_1400 - Sensory box histidine kinase/response regulator, at 1,639,634 to 1,642,234 _1400 Pf6N2E2_1401 - FIG00955631: hypothetical protein, at 1,642,203 to 1,643,366 _1401 Pf6N2E2_1402 - hypothetical protein, at 1,643,382 to 1,643,579 _1402 Pf6N2E2_1403 - Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL, at 1,643,699 to 1,644,226 _1403 Pf6N2E2_1404 - Nitrous oxide reductase maturation transmembrane protein NosY, at 1,644,257 to 1,645,087 _1404 Position (kb) 1642 1643 1644Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 1641.204 kb on + strand, within Pf6N2E2_1400at 1641.661 kb on + strand, within Pf6N2E2_1400at 1641.735 kb on + strand, within Pf6N2E2_1400at 1641.736 kb on - strand, within Pf6N2E2_1400at 1642.112 kb on + strandat 1642.262 kb on + strandat 1642.263 kb on - strandat 1642.288 kb on + strandat 1642.288 kb on + strandat 1642.289 kb on - strandat 1642.289 kb on - strandat 1642.511 kb on - strand, within Pf6N2E2_1401at 1642.511 kb on - strand, within Pf6N2E2_1401at 1642.511 kb on - strand, within Pf6N2E2_1401at 1642.511 kb on - strand, within Pf6N2E2_1401at 1642.511 kb on - strand, within Pf6N2E2_1401at 1642.558 kb on + strand, within Pf6N2E2_1401at 1642.558 kb on + strand, within Pf6N2E2_1401at 1642.558 kb on + strand, within Pf6N2E2_1401at 1642.558 kb on + strand, within Pf6N2E2_1401at 1642.558 kb on + strand, within Pf6N2E2_1401at 1642.558 kb on + strand, within Pf6N2E2_1401at 1642.559 kb on - strand, within Pf6N2E2_1401at 1642.559 kb on - strand, within Pf6N2E2_1401at 1642.561 kb on + strand, within Pf6N2E2_1401at 1642.648 kb on + strand, within Pf6N2E2_1401at 1642.648 kb on + strand, within Pf6N2E2_1401at 1642.649 kb on - strand, within Pf6N2E2_1401at 1642.682 kb on - strand, within Pf6N2E2_1401at 1642.829 kb on - strand, within Pf6N2E2_1401at 1642.849 kb on + strand, within Pf6N2E2_1401at 1642.850 kb on - strand, within Pf6N2E2_1401at 1642.850 kb on - strand, within Pf6N2E2_1401at 1643.230 kb on + strand, within Pf6N2E2_1401at 1643.231 kb on - strand, within Pf6N2E2_1401at 1643.406 kb on - strand, within Pf6N2E2_1402at 1643.406 kb on - strand, within Pf6N2E2_1402at 1643.428 kb on + strand, within Pf6N2E2_1402at 1643.428 kb on + strand, within Pf6N2E2_1402at 1643.428 kb on + strand, within Pf6N2E2_1402at 1643.428 kb on + strand, within Pf6N2E2_1402at 1643.428 kb on + strand, within Pf6N2E2_1402at 1643.429 kb on - strand, within Pf6N2E2_1402at 1643.429 kb on - strand, within Pf6N2E2_1402at 1643.429 kb on - strand, within Pf6N2E2_1402at 1643.429 kb on - strand, within Pf6N2E2_1402at 1643.429 kb on - strand, within Pf6N2E2_1402at 1643.433 kb on + strand, within Pf6N2E2_1402at 1643.433 kb on + strand, within Pf6N2E2_1402at 1643.434 kb on - strand, within Pf6N2E2_1402at 1643.434 kb on - strand, within Pf6N2E2_1402at 1643.434 kb on - strand, within Pf6N2E2_1402at 1643.434 kb on - strand, within Pf6N2E2_1402at 1643.520 kb on + strand, within Pf6N2E2_1402at 1643.521 kb on - strand, within Pf6N2E2_1402at 1643.874 kb on + strand, within Pf6N2E2_1403at 1643.946 kb on + strand, within Pf6N2E2_1403at 1643.946 kb on + strand, within Pf6N2E2_1403at 1643.947 kb on - strand, within Pf6N2E2_1403at 1643.947 kb on - strand, within Pf6N2E2_1403at 1643.947 kb on - strand, within Pf6N2E2_1403at 1644.213 kb on + strandat 1644.213 kb on + strandat 1644.214 kb on - strandat 1644.214 kb on - strandat 1644.214 kb on - strandat 1644.314 kb on + strandat 1644.315 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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1,641,204 + Pf6N2E2_1400 0.60 -0.4
1,641,661 + Pf6N2E2_1400 0.78 -1.4
1,641,735 + Pf6N2E2_1400 0.81 -2.3
1,641,736 - Pf6N2E2_1400 0.81 -1.2
1,642,112 + -0.7
1,642,262 + -2.6
1,642,263 - +4.8
1,642,288 + +0.8
1,642,288 + -3.3
1,642,289 - +5.5
1,642,289 - +6.0
1,642,511 - Pf6N2E2_1401 0.26 +0.2
1,642,511 - Pf6N2E2_1401 0.26 -3.3
1,642,511 - Pf6N2E2_1401 0.26 -1.6
1,642,511 - Pf6N2E2_1401 0.26 -0.7
1,642,511 - Pf6N2E2_1401 0.26 -3.0
1,642,558 + Pf6N2E2_1401 0.30 -2.5
1,642,558 + Pf6N2E2_1401 0.30 -2.0
1,642,558 + Pf6N2E2_1401 0.30 -0.8
1,642,558 + Pf6N2E2_1401 0.30 -2.1
1,642,558 + Pf6N2E2_1401 0.30 -2.5
1,642,558 + Pf6N2E2_1401 0.30 -2.7
1,642,559 - Pf6N2E2_1401 0.31 -1.7
1,642,559 - Pf6N2E2_1401 0.31 -2.5
1,642,561 + Pf6N2E2_1401 0.31 -2.0
1,642,648 + Pf6N2E2_1401 0.38 -1.9
1,642,648 + Pf6N2E2_1401 0.38 -4.0
1,642,649 - Pf6N2E2_1401 0.38 -2.5
1,642,682 - Pf6N2E2_1401 0.41 -1.2
1,642,829 - Pf6N2E2_1401 0.54 -2.6
1,642,849 + Pf6N2E2_1401 0.55 -3.1
1,642,850 - Pf6N2E2_1401 0.56 -1.7
1,642,850 - Pf6N2E2_1401 0.56 -2.4
1,643,230 + Pf6N2E2_1401 0.88 -1.2
1,643,231 - Pf6N2E2_1401 0.88 -2.3
1,643,406 - Pf6N2E2_1402 0.12 -2.8
1,643,406 - Pf6N2E2_1402 0.12 -3.0
1,643,428 + Pf6N2E2_1402 0.23 -0.9
1,643,428 + Pf6N2E2_1402 0.23 -0.2
1,643,428 + Pf6N2E2_1402 0.23 -2.3
1,643,428 + Pf6N2E2_1402 0.23 -3.5
1,643,428 + Pf6N2E2_1402 0.23 -2.0
1,643,429 - Pf6N2E2_1402 0.24 -2.6
1,643,429 - Pf6N2E2_1402 0.24 -2.4
1,643,429 - Pf6N2E2_1402 0.24 -2.5
1,643,429 - Pf6N2E2_1402 0.24 -1.9
1,643,429 - Pf6N2E2_1402 0.24 -1.7
1,643,433 + Pf6N2E2_1402 0.26 -1.9
1,643,433 + Pf6N2E2_1402 0.26 -1.6
1,643,434 - Pf6N2E2_1402 0.26 -3.7
1,643,434 - Pf6N2E2_1402 0.26 -2.3
1,643,434 - Pf6N2E2_1402 0.26 -3.2
1,643,434 - Pf6N2E2_1402 0.26 -3.1
1,643,520 + Pf6N2E2_1402 0.70 +0.0
1,643,521 - Pf6N2E2_1402 0.70 -1.3
1,643,874 + Pf6N2E2_1403 0.33 -0.5
1,643,946 + Pf6N2E2_1403 0.47 -0.4
1,643,946 + Pf6N2E2_1403 0.47 +0.8
1,643,947 - Pf6N2E2_1403 0.47 -0.6
1,643,947 - Pf6N2E2_1403 0.47 -0.2
1,643,947 - Pf6N2E2_1403 0.47 -1.4
1,644,213 + +1.0
1,644,213 + +1.0
1,644,214 - +1.1
1,644,214 - -1.4
1,644,214 - -0.6
1,644,314 + +0.6
1,644,315 - +1.2

Or see this region's nucleotide sequence