Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1400

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1398 and Pf6N2E2_1399 are separated by 54 nucleotidesPf6N2E2_1399 and Pf6N2E2_1400 are separated by 159 nucleotidesPf6N2E2_1400 and Pf6N2E2_1401 overlap by 32 nucleotides Pf6N2E2_1398 - Rhodanese-related sulfurtransferase, at 1,638,215 to 1,638,748 _1398 Pf6N2E2_1399 - Transcriptional regulator, LuxR family, at 1,638,803 to 1,639,474 _1399 Pf6N2E2_1400 - Sensory box histidine kinase/response regulator, at 1,639,634 to 1,642,234 _1400 Pf6N2E2_1401 - FIG00955631: hypothetical protein, at 1,642,203 to 1,643,366 _1401 Position (kb) 1639 1640 1641 1642 1643Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10at 1638.634 kb on - strand, within Pf6N2E2_1398at 1638.657 kb on - strand, within Pf6N2E2_1398at 1638.657 kb on - strand, within Pf6N2E2_1398at 1638.668 kb on + strand, within Pf6N2E2_1398at 1638.668 kb on + strand, within Pf6N2E2_1398at 1638.792 kb on + strandat 1638.812 kb on + strandat 1638.812 kb on + strandat 1638.813 kb on - strandat 1638.813 kb on - strandat 1638.814 kb on + strandat 1639.097 kb on + strand, within Pf6N2E2_1399at 1639.098 kb on - strand, within Pf6N2E2_1399at 1639.098 kb on - strand, within Pf6N2E2_1399at 1639.181 kb on + strand, within Pf6N2E2_1399at 1639.181 kb on + strand, within Pf6N2E2_1399at 1639.181 kb on + strand, within Pf6N2E2_1399at 1639.181 kb on + strand, within Pf6N2E2_1399at 1639.182 kb on - strand, within Pf6N2E2_1399at 1639.182 kb on - strand, within Pf6N2E2_1399at 1639.460 kb on + strandat 1639.460 kb on + strandat 1639.460 kb on + strandat 1639.753 kb on - strandat 1639.753 kb on - strandat 1639.881 kb on + strandat 1639.881 kb on + strandat 1639.881 kb on + strandat 1639.881 kb on + strandat 1639.881 kb on + strandat 1639.882 kb on - strandat 1639.882 kb on - strandat 1639.882 kb on - strandat 1639.882 kb on - strandat 1639.882 kb on - strandat 1639.882 kb on - strandat 1639.882 kb on - strandat 1639.957 kb on + strand, within Pf6N2E2_1400at 1639.957 kb on + strand, within Pf6N2E2_1400at 1639.957 kb on + strand, within Pf6N2E2_1400at 1639.957 kb on + strand, within Pf6N2E2_1400at 1639.958 kb on - strand, within Pf6N2E2_1400at 1639.958 kb on - strand, within Pf6N2E2_1400at 1639.958 kb on - strand, within Pf6N2E2_1400at 1640.240 kb on + strand, within Pf6N2E2_1400at 1640.240 kb on + strand, within Pf6N2E2_1400at 1640.267 kb on - strand, within Pf6N2E2_1400at 1640.473 kb on - strandat 1640.530 kb on + strand, within Pf6N2E2_1400at 1640.531 kb on - strand, within Pf6N2E2_1400at 1640.975 kb on + strand, within Pf6N2E2_1400at 1640.976 kb on - strand, within Pf6N2E2_1400at 1640.979 kb on + strand, within Pf6N2E2_1400at 1640.979 kb on + strand, within Pf6N2E2_1400at 1640.979 kb on + strand, within Pf6N2E2_1400at 1640.979 kb on + strand, within Pf6N2E2_1400at 1640.979 kb on + strand, within Pf6N2E2_1400at 1640.979 kb on + strand, within Pf6N2E2_1400at 1640.980 kb on - strand, within Pf6N2E2_1400at 1640.980 kb on - strand, within Pf6N2E2_1400at 1640.980 kb on - strand, within Pf6N2E2_1400at 1640.994 kb on + strand, within Pf6N2E2_1400at 1640.994 kb on + strand, within Pf6N2E2_1400at 1640.995 kb on - strand, within Pf6N2E2_1400at 1640.995 kb on - strand, within Pf6N2E2_1400at 1640.995 kb on - strand, within Pf6N2E2_1400at 1641.069 kb on + strand, within Pf6N2E2_1400at 1641.069 kb on + strand, within Pf6N2E2_1400at 1641.069 kb on + strand, within Pf6N2E2_1400at 1641.069 kb on + strand, within Pf6N2E2_1400at 1641.070 kb on - strand, within Pf6N2E2_1400at 1641.150 kb on + strand, within Pf6N2E2_1400at 1641.150 kb on + strand, within Pf6N2E2_1400at 1641.150 kb on + strand, within Pf6N2E2_1400at 1641.150 kb on + strand, within Pf6N2E2_1400at 1641.150 kb on - strand, within Pf6N2E2_1400at 1641.151 kb on - strand, within Pf6N2E2_1400at 1641.163 kb on - strand, within Pf6N2E2_1400at 1641.204 kb on + strand, within Pf6N2E2_1400at 1641.661 kb on + strand, within Pf6N2E2_1400at 1641.735 kb on + strand, within Pf6N2E2_1400at 1641.736 kb on - strand, within Pf6N2E2_1400at 1642.112 kb on + strandat 1642.262 kb on + strandat 1642.263 kb on - strandat 1642.288 kb on + strandat 1642.288 kb on + strandat 1642.289 kb on - strandat 1642.289 kb on - strandat 1642.511 kb on - strand, within Pf6N2E2_1401at 1642.511 kb on - strand, within Pf6N2E2_1401at 1642.511 kb on - strand, within Pf6N2E2_1401at 1642.511 kb on - strand, within Pf6N2E2_1401at 1642.511 kb on - strand, within Pf6N2E2_1401at 1642.558 kb on + strand, within Pf6N2E2_1401at 1642.558 kb on + strand, within Pf6N2E2_1401at 1642.558 kb on + strand, within Pf6N2E2_1401at 1642.558 kb on + strand, within Pf6N2E2_1401at 1642.558 kb on + strand, within Pf6N2E2_1401at 1642.558 kb on + strand, within Pf6N2E2_1401at 1642.559 kb on - strand, within Pf6N2E2_1401at 1642.559 kb on - strand, within Pf6N2E2_1401at 1642.561 kb on + strand, within Pf6N2E2_1401at 1642.648 kb on + strand, within Pf6N2E2_1401at 1642.648 kb on + strand, within Pf6N2E2_1401at 1642.649 kb on - strand, within Pf6N2E2_1401at 1642.682 kb on - strand, within Pf6N2E2_1401at 1642.829 kb on - strand, within Pf6N2E2_1401at 1642.849 kb on + strand, within Pf6N2E2_1401at 1642.850 kb on - strand, within Pf6N2E2_1401at 1642.850 kb on - strand, within Pf6N2E2_1401at 1643.230 kb on + strand, within Pf6N2E2_1401at 1643.231 kb on - strand, within Pf6N2E2_1401

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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1,638,634 - Pf6N2E2_1398 0.78 +9.9
1,638,657 - Pf6N2E2_1398 0.83 +8.4
1,638,657 - Pf6N2E2_1398 0.83 +9.0
1,638,668 + Pf6N2E2_1398 0.85 +1.2
1,638,668 + Pf6N2E2_1398 0.85 +2.6
1,638,792 + +5.7
1,638,812 + +8.1
1,638,812 + +9.3
1,638,813 - +9.5
1,638,813 - +8.9
1,638,814 + +10.1
1,639,097 + Pf6N2E2_1399 0.44 +9.7
1,639,098 - Pf6N2E2_1399 0.44 +8.5
1,639,098 - Pf6N2E2_1399 0.44 +8.8
1,639,181 + Pf6N2E2_1399 0.56 +8.5
1,639,181 + Pf6N2E2_1399 0.56 +8.8
1,639,181 + Pf6N2E2_1399 0.56 +8.4
1,639,181 + Pf6N2E2_1399 0.56 +9.1
1,639,182 - Pf6N2E2_1399 0.56 +8.9
1,639,182 - Pf6N2E2_1399 0.56 +8.8
1,639,460 + +4.3
1,639,460 + +4.4
1,639,460 + +4.7
1,639,753 - -2.6
1,639,753 - -2.7
1,639,881 + -1.4
1,639,881 + -2.1
1,639,881 + -3.5
1,639,881 + -3.4
1,639,881 + -1.9
1,639,882 - -3.7
1,639,882 - -2.1
1,639,882 - -2.0
1,639,882 - -2.1
1,639,882 - -1.4
1,639,882 - -1.6
1,639,882 - -1.9
1,639,957 + Pf6N2E2_1400 0.12 +1.6
1,639,957 + Pf6N2E2_1400 0.12 -3.3
1,639,957 + Pf6N2E2_1400 0.12 +0.0
1,639,957 + Pf6N2E2_1400 0.12 +0.0
1,639,958 - Pf6N2E2_1400 0.12 -3.3
1,639,958 - Pf6N2E2_1400 0.12 -1.9
1,639,958 - Pf6N2E2_1400 0.12 -4.2
1,640,240 + Pf6N2E2_1400 0.23 -1.5
1,640,240 + Pf6N2E2_1400 0.23 -2.1
1,640,267 - Pf6N2E2_1400 0.24 -1.7
1,640,473 - +1.6
1,640,530 + Pf6N2E2_1400 0.34 -3.4
1,640,531 - Pf6N2E2_1400 0.34 -3.0
1,640,975 + Pf6N2E2_1400 0.52 -3.3
1,640,976 - Pf6N2E2_1400 0.52 -0.4
1,640,979 + Pf6N2E2_1400 0.52 -2.7
1,640,979 + Pf6N2E2_1400 0.52 -2.6
1,640,979 + Pf6N2E2_1400 0.52 -3.3
1,640,979 + Pf6N2E2_1400 0.52 -2.5
1,640,979 + Pf6N2E2_1400 0.52 -2.5
1,640,979 + Pf6N2E2_1400 0.52 -1.9
1,640,980 - Pf6N2E2_1400 0.52 -1.4
1,640,980 - Pf6N2E2_1400 0.52 -2.9
1,640,980 - Pf6N2E2_1400 0.52 -1.7
1,640,994 + Pf6N2E2_1400 0.52 -3.2
1,640,994 + Pf6N2E2_1400 0.52 -0.9
1,640,995 - Pf6N2E2_1400 0.52 -1.2
1,640,995 - Pf6N2E2_1400 0.52 -1.9
1,640,995 - Pf6N2E2_1400 0.52 -1.7
1,641,069 + Pf6N2E2_1400 0.55 -3.5
1,641,069 + Pf6N2E2_1400 0.55 -0.2
1,641,069 + Pf6N2E2_1400 0.55 +0.5
1,641,069 + Pf6N2E2_1400 0.55 -1.4
1,641,070 - Pf6N2E2_1400 0.55 -1.5
1,641,150 + Pf6N2E2_1400 0.58 -1.9
1,641,150 + Pf6N2E2_1400 0.58 -2.2
1,641,150 + Pf6N2E2_1400 0.58 -3.2
1,641,150 + Pf6N2E2_1400 0.58 -3.3
1,641,150 - Pf6N2E2_1400 0.58 -2.7
1,641,151 - Pf6N2E2_1400 0.58 -1.6
1,641,163 - Pf6N2E2_1400 0.59 -3.6
1,641,204 + Pf6N2E2_1400 0.60 -0.4
1,641,661 + Pf6N2E2_1400 0.78 -1.4
1,641,735 + Pf6N2E2_1400 0.81 -2.3
1,641,736 - Pf6N2E2_1400 0.81 -1.2
1,642,112 + -0.7
1,642,262 + -2.6
1,642,263 - +4.8
1,642,288 + +0.8
1,642,288 + -3.3
1,642,289 - +5.5
1,642,289 - +6.0
1,642,511 - Pf6N2E2_1401 0.26 +0.2
1,642,511 - Pf6N2E2_1401 0.26 -3.3
1,642,511 - Pf6N2E2_1401 0.26 -1.6
1,642,511 - Pf6N2E2_1401 0.26 -0.7
1,642,511 - Pf6N2E2_1401 0.26 -3.0
1,642,558 + Pf6N2E2_1401 0.30 -2.5
1,642,558 + Pf6N2E2_1401 0.30 -2.0
1,642,558 + Pf6N2E2_1401 0.30 -0.8
1,642,558 + Pf6N2E2_1401 0.30 -2.1
1,642,558 + Pf6N2E2_1401 0.30 -2.5
1,642,558 + Pf6N2E2_1401 0.30 -2.7
1,642,559 - Pf6N2E2_1401 0.31 -1.7
1,642,559 - Pf6N2E2_1401 0.31 -2.5
1,642,561 + Pf6N2E2_1401 0.31 -2.0
1,642,648 + Pf6N2E2_1401 0.38 -1.9
1,642,648 + Pf6N2E2_1401 0.38 -4.0
1,642,649 - Pf6N2E2_1401 0.38 -2.5
1,642,682 - Pf6N2E2_1401 0.41 -1.2
1,642,829 - Pf6N2E2_1401 0.54 -2.6
1,642,849 + Pf6N2E2_1401 0.55 -3.1
1,642,850 - Pf6N2E2_1401 0.56 -1.7
1,642,850 - Pf6N2E2_1401 0.56 -2.4
1,643,230 + Pf6N2E2_1401 0.88 -1.2
1,643,231 - Pf6N2E2_1401 0.88 -2.3

Or see this region's nucleotide sequence