Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1384 and Pf6N2E2_1385 are separated by 16 nucleotides Pf6N2E2_1385 and Pf6N2E2_1386 are separated by 10 nucleotides Pf6N2E2_1386 and Pf6N2E2_1387 are separated by 5 nucleotides Pf6N2E2_1387 and Pf6N2E2_1388 overlap by 78 nucleotides Pf6N2E2_1388 and Pf6N2E2_1389 are separated by 137 nucleotides
Pf6N2E2_1384 - SoxH protein, homolog, at 1,626,064 to 1,626,993
_1384
Pf6N2E2_1385 - FIG00956261: hypothetical protein, at 1,627,010 to 1,627,768
_1385
Pf6N2E2_1386 - amino acid ABC transporter, periplasmic substrate-binding protein, at 1,627,779 to 1,628,654
_1386
Pf6N2E2_1387 - Cytochrome C550 (Soluble cytochrome C), at 1,628,660 to 1,629,121
_1387
Pf6N2E2_1388 - hypothetical protein, at 1,629,044 to 1,629,238
_1388
Pf6N2E2_1389 - Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8), at 1,629,376 to 1,631,232
_1389
Position (kb)
1627
1628
1629 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6
7
8
9
10 at 1627.033 kb on + strand at 1627.033 kb on + strand at 1627.033 kb on + strand at 1627.034 kb on - strand at 1627.530 kb on - strand, within Pf6N2E2_1385 at 1627.663 kb on - strand, within Pf6N2E2_1385 at 1627.663 kb on - strand, within Pf6N2E2_1385 at 1627.780 kb on + strand at 1627.786 kb on + strand at 1627.786 kb on + strand at 1627.787 kb on - strand at 1627.787 kb on - strand at 1627.787 kb on - strand at 1627.826 kb on - strand at 1627.826 kb on - strand at 1627.882 kb on + strand, within Pf6N2E2_1386 at 1628.132 kb on - strand, within Pf6N2E2_1386 at 1628.132 kb on - strand, within Pf6N2E2_1386 at 1628.132 kb on - strand, within Pf6N2E2_1386 at 1628.221 kb on + strand, within Pf6N2E2_1386 at 1628.222 kb on - strand, within Pf6N2E2_1386 at 1628.249 kb on - strand, within Pf6N2E2_1386 at 1628.249 kb on - strand, within Pf6N2E2_1386 at 1628.386 kb on + strand, within Pf6N2E2_1386 at 1628.387 kb on - strand, within Pf6N2E2_1386 at 1628.387 kb on - strand, within Pf6N2E2_1386 at 1628.387 kb on - strand, within Pf6N2E2_1386 at 1628.387 kb on - strand, within Pf6N2E2_1386 at 1628.521 kb on + strand, within Pf6N2E2_1386 at 1628.572 kb on - strand at 1628.581 kb on + strand at 1628.582 kb on - strand at 1628.676 kb on - strand at 1628.724 kb on + strand, within Pf6N2E2_1387 at 1628.724 kb on + strand, within Pf6N2E2_1387 at 1628.724 kb on + strand, within Pf6N2E2_1387 at 1628.745 kb on + strand, within Pf6N2E2_1387 at 1628.745 kb on + strand, within Pf6N2E2_1387 at 1628.745 kb on + strand, within Pf6N2E2_1387 at 1628.746 kb on - strand, within Pf6N2E2_1387 at 1628.746 kb on - strand, within Pf6N2E2_1387 at 1628.746 kb on - strand, within Pf6N2E2_1387 at 1628.746 kb on - strand, within Pf6N2E2_1387 at 1628.777 kb on + strand, within Pf6N2E2_1387 at 1628.777 kb on + strand, within Pf6N2E2_1387 at 1628.777 kb on + strand, within Pf6N2E2_1387 at 1629.035 kb on + strand, within Pf6N2E2_1387 at 1629.035 kb on + strand, within Pf6N2E2_1387 at 1629.036 kb on - strand, within Pf6N2E2_1387 at 1629.179 kb on - strand, within Pf6N2E2_1388 at 1629.179 kb on - strand, within Pf6N2E2_1388 at 1629.225 kb on + strand at 1629.225 kb on + strand at 1629.225 kb on + strand at 1629.225 kb on + strand at 1629.226 kb on - strand at 1629.226 kb on - strand at 1629.236 kb on + strand at 1629.237 kb on - strand at 1629.261 kb on - strand at 1629.611 kb on - strand, within Pf6N2E2_1389 at 1629.611 kb on - strand, within Pf6N2E2_1389
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 1,627,033 + -0.8 1,627,033 + +0.5 1,627,033 + -0.7 1,627,034 - +0.1 1,627,530 - Pf6N2E2_1385 0.69 -0.4 1,627,663 - Pf6N2E2_1385 0.86 +0.8 1,627,663 - Pf6N2E2_1385 0.86 +1.6 1,627,780 + +0.6 1,627,786 + +0.3 1,627,786 + -0.6 1,627,787 - -0.9 1,627,787 - +0.7 1,627,787 - -1.0 1,627,826 - +1.9 1,627,826 - +1.4 1,627,882 + Pf6N2E2_1386 0.12 +2.6 1,628,132 - Pf6N2E2_1386 0.40 +2.2 1,628,132 - Pf6N2E2_1386 0.40 +1.8 1,628,132 - Pf6N2E2_1386 0.40 +2.0 1,628,221 + Pf6N2E2_1386 0.50 +1.8 1,628,222 - Pf6N2E2_1386 0.51 +2.0 1,628,249 - Pf6N2E2_1386 0.54 +3.7 1,628,249 - Pf6N2E2_1386 0.54 +2.0 1,628,386 + Pf6N2E2_1386 0.69 +2.9 1,628,387 - Pf6N2E2_1386 0.69 +1.7 1,628,387 - Pf6N2E2_1386 0.69 +1.9 1,628,387 - Pf6N2E2_1386 0.69 +1.9 1,628,387 - Pf6N2E2_1386 0.69 +1.2 1,628,521 + Pf6N2E2_1386 0.85 +2.7 1,628,572 - +2.3 1,628,581 + +1.9 1,628,582 - +3.1 1,628,676 - +7.0 1,628,724 + Pf6N2E2_1387 0.14 +7.4 1,628,724 + Pf6N2E2_1387 0.14 +7.6 1,628,724 + Pf6N2E2_1387 0.14 +7.4 1,628,745 + Pf6N2E2_1387 0.18 +7.6 1,628,745 + Pf6N2E2_1387 0.18 +7.4 1,628,745 + Pf6N2E2_1387 0.18 +7.6 1,628,746 - Pf6N2E2_1387 0.19 +6.7 1,628,746 - Pf6N2E2_1387 0.19 +6.9 1,628,746 - Pf6N2E2_1387 0.19 +7.0 1,628,746 - Pf6N2E2_1387 0.19 +6.7 1,628,777 + Pf6N2E2_1387 0.25 +5.5 1,628,777 + Pf6N2E2_1387 0.25 +7.4 1,628,777 + Pf6N2E2_1387 0.25 +6.3 1,629,035 + Pf6N2E2_1387 0.81 +8.8 1,629,035 + Pf6N2E2_1387 0.81 +6.3 1,629,036 - Pf6N2E2_1387 0.81 +5.5 1,629,179 - Pf6N2E2_1388 0.69 +3.3 1,629,179 - Pf6N2E2_1388 0.69 +5.1 1,629,225 + +8.7 1,629,225 + +9.2 1,629,225 + +9.2 1,629,225 + +8.7 1,629,226 - +8.4 1,629,226 - +7.7 1,629,236 + +9.8 1,629,237 - +8.7 1,629,261 - +8.8 1,629,611 - Pf6N2E2_1389 0.13 +8.7 1,629,611 - Pf6N2E2_1389 0.13 +9.3
Or see this region's nucleotide sequence