Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1297 and Pf6N2E2_1298 are separated by 60 nucleotides Pf6N2E2_1298 and Pf6N2E2_1299 are separated by 141 nucleotides Pf6N2E2_1299 and Pf6N2E2_1300 are separated by 108 nucleotides
Pf6N2E2_1297 - Nucleoside-diphosphate-sugar epimerases, at 1,532,083 to 1,532,952
_1297
Pf6N2E2_1298 - Xanthine transporter,putative, at 1,533,013 to 1,534,242
_1298
Pf6N2E2_1299 - Transcriptional regulator, TetR family, at 1,534,384 to 1,535,019
_1299
Pf6N2E2_1300 - Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91), at 1,535,128 to 1,535,919
_1300
Position (kb)
1533
1534
1535 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1532.025 kb on + strand at 1532.096 kb on + strand at 1532.944 kb on + strand at 1532.945 kb on - strand at 1532.953 kb on - strand at 1532.953 kb on - strand at 1532.997 kb on - strand at 1532.997 kb on - strand at 1533.023 kb on + strand at 1533.024 kb on - strand at 1533.171 kb on + strand, within Pf6N2E2_1298 at 1533.189 kb on - strand, within Pf6N2E2_1298 at 1533.189 kb on - strand, within Pf6N2E2_1298 at 1533.189 kb on - strand, within Pf6N2E2_1298 at 1533.300 kb on - strand, within Pf6N2E2_1298 at 1533.300 kb on - strand, within Pf6N2E2_1298 at 1533.491 kb on - strand, within Pf6N2E2_1298 at 1533.562 kb on + strand, within Pf6N2E2_1298 at 1533.582 kb on - strand, within Pf6N2E2_1298 at 1533.591 kb on + strand, within Pf6N2E2_1298 at 1533.744 kb on - strand, within Pf6N2E2_1298 at 1533.923 kb on + strand, within Pf6N2E2_1298 at 1534.144 kb on + strand at 1534.145 kb on - strand at 1534.145 kb on - strand at 1534.145 kb on - strand at 1534.227 kb on + strand at 1534.228 kb on - strand at 1534.228 kb on - strand at 1534.330 kb on - strand at 1534.562 kb on - strand, within Pf6N2E2_1299 at 1534.567 kb on + strand, within Pf6N2E2_1299 at 1534.568 kb on - strand, within Pf6N2E2_1299 at 1534.632 kb on + strand, within Pf6N2E2_1299 at 1534.633 kb on - strand at 1534.734 kb on - strand, within Pf6N2E2_1299 at 1535.078 kb on + strand at 1535.081 kb on + strand at 1535.081 kb on + strand at 1535.082 kb on - strand at 1535.082 kb on - strand at 1535.082 kb on - strand at 1535.139 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 1,532,025 + -0.4 1,532,096 + -0.5 1,532,944 + +0.3 1,532,945 - +0.5 1,532,953 - +0.9 1,532,953 - +1.7 1,532,997 - +0.0 1,532,997 - -0.9 1,533,023 + -0.6 1,533,024 - -2.3 1,533,171 + Pf6N2E2_1298 0.13 -0.6 1,533,189 - Pf6N2E2_1298 0.14 -1.7 1,533,189 - Pf6N2E2_1298 0.14 -2.3 1,533,189 - Pf6N2E2_1298 0.14 -0.8 1,533,300 - Pf6N2E2_1298 0.23 -1.8 1,533,300 - Pf6N2E2_1298 0.23 +0.5 1,533,491 - Pf6N2E2_1298 0.39 -1.0 1,533,562 + Pf6N2E2_1298 0.45 -1.1 1,533,582 - Pf6N2E2_1298 0.46 +0.4 1,533,591 + Pf6N2E2_1298 0.47 -0.1 1,533,744 - Pf6N2E2_1298 0.59 -1.1 1,533,923 + Pf6N2E2_1298 0.74 +1.5 1,534,144 + -1.4 1,534,145 - -1.2 1,534,145 - -1.5 1,534,145 - +0.5 1,534,227 + +3.2 1,534,228 - +1.0 1,534,228 - +0.5 1,534,330 - +0.8 1,534,562 - Pf6N2E2_1299 0.28 -0.6 1,534,567 + Pf6N2E2_1299 0.29 +0.8 1,534,568 - Pf6N2E2_1299 0.29 +1.9 1,534,632 + Pf6N2E2_1299 0.39 -1.4 1,534,633 - -0.0 1,534,734 - Pf6N2E2_1299 0.55 +0.7 1,535,078 + +1.4 1,535,081 + -0.3 1,535,081 + +0.3 1,535,082 - +0.4 1,535,082 - -2.1 1,535,082 - -0.2 1,535,139 - -1.3
Or see this region's nucleotide sequence