Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1298

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1297 and Pf6N2E2_1298 are separated by 60 nucleotidesPf6N2E2_1298 and Pf6N2E2_1299 are separated by 141 nucleotidesPf6N2E2_1299 and Pf6N2E2_1300 are separated by 108 nucleotides Pf6N2E2_1297 - Nucleoside-diphosphate-sugar epimerases, at 1,532,083 to 1,532,952 _1297 Pf6N2E2_1298 - Xanthine transporter,putative, at 1,533,013 to 1,534,242 _1298 Pf6N2E2_1299 - Transcriptional regulator, TetR family, at 1,534,384 to 1,535,019 _1299 Pf6N2E2_1300 - Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91), at 1,535,128 to 1,535,919 _1300 Position (kb) 1533 1534 1535Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1532.025 kb on + strandat 1532.096 kb on + strandat 1532.944 kb on + strandat 1532.945 kb on - strandat 1532.953 kb on - strandat 1532.953 kb on - strandat 1532.997 kb on - strandat 1532.997 kb on - strandat 1533.023 kb on + strandat 1533.024 kb on - strandat 1533.171 kb on + strand, within Pf6N2E2_1298at 1533.189 kb on - strand, within Pf6N2E2_1298at 1533.189 kb on - strand, within Pf6N2E2_1298at 1533.189 kb on - strand, within Pf6N2E2_1298at 1533.300 kb on - strand, within Pf6N2E2_1298at 1533.300 kb on - strand, within Pf6N2E2_1298at 1533.491 kb on - strand, within Pf6N2E2_1298at 1533.562 kb on + strand, within Pf6N2E2_1298at 1533.582 kb on - strand, within Pf6N2E2_1298at 1533.591 kb on + strand, within Pf6N2E2_1298at 1533.744 kb on - strand, within Pf6N2E2_1298at 1533.923 kb on + strand, within Pf6N2E2_1298at 1534.144 kb on + strandat 1534.145 kb on - strandat 1534.145 kb on - strandat 1534.145 kb on - strandat 1534.227 kb on + strandat 1534.228 kb on - strandat 1534.228 kb on - strandat 1534.330 kb on - strandat 1534.562 kb on - strand, within Pf6N2E2_1299at 1534.567 kb on + strand, within Pf6N2E2_1299at 1534.568 kb on - strand, within Pf6N2E2_1299at 1534.632 kb on + strand, within Pf6N2E2_1299at 1534.633 kb on - strandat 1534.734 kb on - strand, within Pf6N2E2_1299at 1535.078 kb on + strandat 1535.081 kb on + strandat 1535.081 kb on + strandat 1535.082 kb on - strandat 1535.082 kb on - strandat 1535.082 kb on - strandat 1535.139 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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1,532,025 + -0.4
1,532,096 + -0.5
1,532,944 + +0.3
1,532,945 - +0.5
1,532,953 - +0.9
1,532,953 - +1.7
1,532,997 - +0.0
1,532,997 - -0.9
1,533,023 + -0.6
1,533,024 - -2.3
1,533,171 + Pf6N2E2_1298 0.13 -0.6
1,533,189 - Pf6N2E2_1298 0.14 -1.7
1,533,189 - Pf6N2E2_1298 0.14 -2.3
1,533,189 - Pf6N2E2_1298 0.14 -0.8
1,533,300 - Pf6N2E2_1298 0.23 -1.8
1,533,300 - Pf6N2E2_1298 0.23 +0.5
1,533,491 - Pf6N2E2_1298 0.39 -1.0
1,533,562 + Pf6N2E2_1298 0.45 -1.1
1,533,582 - Pf6N2E2_1298 0.46 +0.4
1,533,591 + Pf6N2E2_1298 0.47 -0.1
1,533,744 - Pf6N2E2_1298 0.59 -1.1
1,533,923 + Pf6N2E2_1298 0.74 +1.5
1,534,144 + -1.4
1,534,145 - -1.2
1,534,145 - -1.5
1,534,145 - +0.5
1,534,227 + +3.2
1,534,228 - +1.0
1,534,228 - +0.5
1,534,330 - +0.8
1,534,562 - Pf6N2E2_1299 0.28 -0.6
1,534,567 + Pf6N2E2_1299 0.29 +0.8
1,534,568 - Pf6N2E2_1299 0.29 +1.9
1,534,632 + Pf6N2E2_1299 0.39 -1.4
1,534,633 - -0.0
1,534,734 - Pf6N2E2_1299 0.55 +0.7
1,535,078 + +1.4
1,535,081 + -0.3
1,535,081 + +0.3
1,535,082 - +0.4
1,535,082 - -2.1
1,535,082 - -0.2
1,535,139 - -1.3

Or see this region's nucleotide sequence