Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1032

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1031 and Pf6N2E2_1032 are separated by 1 nucleotidesPf6N2E2_1032 and Pf6N2E2_1033 are separated by 25 nucleotides Pf6N2E2_1031 - Alkanesulfonates transport system permease protein, at 1,205,278 to 1,206,222 _1031 Pf6N2E2_1032 - Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB, at 1,206,224 to 1,207,036 _1032 Pf6N2E2_1033 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 1,207,062 to 1,208,087 _1033 Position (kb) 1206 1207 1208Strain fitness (log2 ratio) -3 -2 -1 0 1at 1205.320 kb on + strandat 1205.321 kb on - strandat 1205.655 kb on - strand, within Pf6N2E2_1031at 1205.655 kb on - strand, within Pf6N2E2_1031at 1205.860 kb on + strand, within Pf6N2E2_1031at 1205.860 kb on + strand, within Pf6N2E2_1031at 1205.887 kb on - strand, within Pf6N2E2_1031at 1206.032 kb on + strand, within Pf6N2E2_1031at 1206.133 kb on + strandat 1206.133 kb on + strandat 1206.133 kb on + strandat 1206.133 kb on + strandat 1206.134 kb on - strandat 1206.134 kb on - strandat 1206.134 kb on - strandat 1206.134 kb on - strandat 1206.134 kb on - strandat 1206.224 kb on - strandat 1206.757 kb on - strand, within Pf6N2E2_1032at 1207.000 kb on + strandat 1207.006 kb on + strandat 1207.006 kb on + strandat 1207.007 kb on - strandat 1207.007 kb on - strandat 1207.035 kb on - strandat 1207.035 kb on - strandat 1207.263 kb on + strand, within Pf6N2E2_1033at 1207.264 kb on - strand, within Pf6N2E2_1033at 1207.264 kb on - strand, within Pf6N2E2_1033at 1207.528 kb on - strand, within Pf6N2E2_1033at 1207.846 kb on - strand, within Pf6N2E2_1033at 1207.927 kb on + strand, within Pf6N2E2_1033

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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1,205,320 + -1.0
1,205,321 - -0.0
1,205,655 - Pf6N2E2_1031 0.40 +0.0
1,205,655 - Pf6N2E2_1031 0.40 +0.4
1,205,860 + Pf6N2E2_1031 0.62 +0.6
1,205,860 + Pf6N2E2_1031 0.62 -0.7
1,205,887 - Pf6N2E2_1031 0.64 -0.7
1,206,032 + Pf6N2E2_1031 0.80 +0.3
1,206,133 + -0.3
1,206,133 + -0.2
1,206,133 + -0.0
1,206,133 + -0.7
1,206,134 - +0.9
1,206,134 - -3.7
1,206,134 - +0.0
1,206,134 - -1.9
1,206,134 - -1.6
1,206,224 - -0.4
1,206,757 - Pf6N2E2_1032 0.66 -1.4
1,207,000 + -0.2
1,207,006 + -0.4
1,207,006 + -1.2
1,207,007 - -0.2
1,207,007 - -0.6
1,207,035 - +0.3
1,207,035 - +0.0
1,207,263 + Pf6N2E2_1033 0.20 +0.6
1,207,264 - Pf6N2E2_1033 0.20 +0.3
1,207,264 - Pf6N2E2_1033 0.20 +0.3
1,207,528 - Pf6N2E2_1033 0.45 -0.4
1,207,846 - Pf6N2E2_1033 0.76 +0.4
1,207,927 + Pf6N2E2_1033 0.84 +1.4

Or see this region's nucleotide sequence