Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1009

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1008 and Pf6N2E2_1009 are separated by 840 nucleotidesPf6N2E2_1009 and Pf6N2E2_1010 are separated by 212 nucleotides Pf6N2E2_1008 - Inositol transport system ATP-binding protein, at 1,176,792 to 1,178,249 _1008 Pf6N2E2_1009 - Inositol transport system permease protein, at 1,179,090 to 1,179,290 _1009 Pf6N2E2_1010 - Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein), at 1,179,503 to 1,180,723 _1010 Position (kb) 1179 1180Strain fitness (log2 ratio) -1 0 1 2at 1178.096 kb on - strand, within Pf6N2E2_1008at 1178.362 kb on + strandat 1178.362 kb on + strandat 1178.363 kb on - strandat 1178.391 kb on + strandat 1178.410 kb on + strandat 1178.411 kb on - strandat 1178.470 kb on + strandat 1178.480 kb on + strandat 1178.480 kb on + strandat 1178.480 kb on + strandat 1178.480 kb on + strandat 1178.480 kb on + strandat 1178.480 kb on + strandat 1178.480 kb on + strandat 1178.480 kb on + strandat 1178.480 kb on + strandat 1178.480 kb on + strandat 1178.480 kb on + strandat 1178.481 kb on - strandat 1178.497 kb on + strandat 1178.497 kb on + strandat 1178.497 kb on + strandat 1178.497 kb on + strandat 1178.497 kb on + strandat 1178.498 kb on - strandat 1178.498 kb on - strandat 1178.498 kb on - strandat 1178.498 kb on - strandat 1178.657 kb on + strandat 1178.860 kb on + strandat 1178.868 kb on + strandat 1178.868 kb on + strandat 1178.872 kb on + strandat 1178.872 kb on + strandat 1178.872 kb on + strandat 1178.872 kb on + strandat 1178.872 kb on + strandat 1178.873 kb on - strandat 1178.905 kb on + strandat 1178.905 kb on + strandat 1178.905 kb on + strandat 1178.905 kb on + strandat 1178.905 kb on + strandat 1178.905 kb on + strandat 1178.906 kb on - strandat 1178.906 kb on - strandat 1178.907 kb on + strandat 1178.979 kb on + strandat 1178.979 kb on + strandat 1178.979 kb on + strandat 1178.979 kb on + strandat 1178.979 kb on + strandat 1178.979 kb on + strandat 1178.984 kb on - strandat 1179.210 kb on + strand, within Pf6N2E2_1009at 1179.210 kb on + strand, within Pf6N2E2_1009at 1179.211 kb on - strand, within Pf6N2E2_1009at 1179.264 kb on + strand, within Pf6N2E2_1009at 1179.321 kb on + strandat 1179.347 kb on + strandat 1179.347 kb on + strandat 1179.348 kb on - strandat 1179.348 kb on - strandat 1179.405 kb on - strandat 1179.485 kb on - strandat 1179.787 kb on + strand, within Pf6N2E2_1010at 1179.809 kb on + strand, within Pf6N2E2_1010at 1179.810 kb on - strand, within Pf6N2E2_1010at 1179.837 kb on - strand, within Pf6N2E2_1010at 1179.899 kb on + strand, within Pf6N2E2_1010at 1179.900 kb on - strand, within Pf6N2E2_1010at 1179.995 kb on + strand, within Pf6N2E2_1010at 1179.995 kb on + strand, within Pf6N2E2_1010at 1180.040 kb on + strand, within Pf6N2E2_1010at 1180.253 kb on + strand, within Pf6N2E2_1010

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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1,178,096 - Pf6N2E2_1008 0.89 -0.8
1,178,362 + +0.4
1,178,362 + +0.7
1,178,363 - +0.7
1,178,391 + -1.3
1,178,410 + -1.3
1,178,411 - +0.3
1,178,470 + -0.5
1,178,480 + +0.7
1,178,480 + +0.5
1,178,480 + -0.2
1,178,480 + +0.0
1,178,480 + -1.7
1,178,480 + +0.6
1,178,480 + -0.1
1,178,480 + +0.4
1,178,480 + +1.6
1,178,480 + -0.5
1,178,480 + +1.6
1,178,481 - +0.4
1,178,497 + +0.4
1,178,497 + +0.2
1,178,497 + +0.7
1,178,497 + -0.9
1,178,497 + -1.1
1,178,498 - -1.6
1,178,498 - +2.1
1,178,498 - -1.0
1,178,498 - +0.6
1,178,657 + -0.3
1,178,860 + -0.2
1,178,868 + -0.3
1,178,868 + -0.2
1,178,872 + +0.9
1,178,872 + -1.0
1,178,872 + +0.0
1,178,872 + -0.4
1,178,872 + -0.3
1,178,873 - +0.7
1,178,905 + +0.7
1,178,905 + +0.8
1,178,905 + +0.0
1,178,905 + -0.4
1,178,905 + -1.6
1,178,905 + +0.4
1,178,906 - -1.5
1,178,906 - +1.5
1,178,907 + -1.6
1,178,979 + +1.5
1,178,979 + +0.9
1,178,979 + -1.1
1,178,979 + +1.4
1,178,979 + -1.2
1,178,979 + -0.8
1,178,984 - -0.4
1,179,210 + Pf6N2E2_1009 0.60 -1.6
1,179,210 + Pf6N2E2_1009 0.60 -0.9
1,179,211 - Pf6N2E2_1009 0.60 +0.1
1,179,264 + Pf6N2E2_1009 0.87 -0.8
1,179,321 + +1.0
1,179,347 + +0.3
1,179,347 + +0.0
1,179,348 - +1.6
1,179,348 - +0.2
1,179,405 - -0.2
1,179,485 - +0.0
1,179,787 + Pf6N2E2_1010 0.23 +0.7
1,179,809 + Pf6N2E2_1010 0.25 -0.4
1,179,810 - Pf6N2E2_1010 0.25 +0.1
1,179,837 - Pf6N2E2_1010 0.27 -0.9
1,179,899 + Pf6N2E2_1010 0.32 -0.4
1,179,900 - Pf6N2E2_1010 0.33 +0.0
1,179,995 + Pf6N2E2_1010 0.40 +1.0
1,179,995 + Pf6N2E2_1010 0.40 -0.1
1,180,040 + Pf6N2E2_1010 0.44 -0.1
1,180,253 + Pf6N2E2_1010 0.61 -1.2

Or see this region's nucleotide sequence