Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1008 and Pf6N2E2_1009 are separated by 840 nucleotides Pf6N2E2_1009 and Pf6N2E2_1010 are separated by 212 nucleotides
Pf6N2E2_1008 - Inositol transport system ATP-binding protein, at 1,176,792 to 1,178,249
_1008
Pf6N2E2_1009 - Inositol transport system permease protein, at 1,179,090 to 1,179,290
_1009
Pf6N2E2_1010 - Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein), at 1,179,503 to 1,180,723
_1010
Position (kb)
1179
1180 Strain fitness (log2 ratio)
-1
0
1
2 at 1178.096 kb on - strand, within Pf6N2E2_1008 at 1178.362 kb on + strand at 1178.362 kb on + strand at 1178.363 kb on - strand at 1178.391 kb on + strand at 1178.410 kb on + strand at 1178.411 kb on - strand at 1178.470 kb on + strand at 1178.480 kb on + strand at 1178.480 kb on + strand at 1178.480 kb on + strand at 1178.480 kb on + strand at 1178.480 kb on + strand at 1178.480 kb on + strand at 1178.480 kb on + strand at 1178.480 kb on + strand at 1178.480 kb on + strand at 1178.480 kb on + strand at 1178.480 kb on + strand at 1178.481 kb on - strand at 1178.497 kb on + strand at 1178.497 kb on + strand at 1178.497 kb on + strand at 1178.497 kb on + strand at 1178.497 kb on + strand at 1178.498 kb on - strand at 1178.498 kb on - strand at 1178.498 kb on - strand at 1178.498 kb on - strand at 1178.657 kb on + strand at 1178.860 kb on + strand at 1178.868 kb on + strand at 1178.868 kb on + strand at 1178.872 kb on + strand at 1178.872 kb on + strand at 1178.872 kb on + strand at 1178.872 kb on + strand at 1178.872 kb on + strand at 1178.873 kb on - strand at 1178.905 kb on + strand at 1178.905 kb on + strand at 1178.905 kb on + strand at 1178.905 kb on + strand at 1178.905 kb on + strand at 1178.905 kb on + strand at 1178.906 kb on - strand at 1178.906 kb on - strand at 1178.907 kb on + strand at 1178.979 kb on + strand at 1178.979 kb on + strand at 1178.979 kb on + strand at 1178.979 kb on + strand at 1178.979 kb on + strand at 1178.979 kb on + strand at 1178.984 kb on - strand at 1179.210 kb on + strand, within Pf6N2E2_1009 at 1179.210 kb on + strand, within Pf6N2E2_1009 at 1179.211 kb on - strand, within Pf6N2E2_1009 at 1179.264 kb on + strand, within Pf6N2E2_1009 at 1179.321 kb on + strand at 1179.347 kb on + strand at 1179.347 kb on + strand at 1179.348 kb on - strand at 1179.348 kb on - strand at 1179.405 kb on - strand at 1179.485 kb on - strand at 1179.787 kb on + strand, within Pf6N2E2_1010 at 1179.809 kb on + strand, within Pf6N2E2_1010 at 1179.810 kb on - strand, within Pf6N2E2_1010 at 1179.837 kb on - strand, within Pf6N2E2_1010 at 1179.899 kb on + strand, within Pf6N2E2_1010 at 1179.900 kb on - strand, within Pf6N2E2_1010 at 1179.995 kb on + strand, within Pf6N2E2_1010 at 1179.995 kb on + strand, within Pf6N2E2_1010 at 1180.040 kb on + strand, within Pf6N2E2_1010 at 1180.253 kb on + strand, within Pf6N2E2_1010
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 1,178,096 - Pf6N2E2_1008 0.89 -0.8 1,178,362 + +0.4 1,178,362 + +0.7 1,178,363 - +0.7 1,178,391 + -1.3 1,178,410 + -1.3 1,178,411 - +0.3 1,178,470 + -0.5 1,178,480 + +0.7 1,178,480 + +0.5 1,178,480 + -0.2 1,178,480 + +0.0 1,178,480 + -1.7 1,178,480 + +0.6 1,178,480 + -0.1 1,178,480 + +0.4 1,178,480 + +1.6 1,178,480 + -0.5 1,178,480 + +1.6 1,178,481 - +0.4 1,178,497 + +0.4 1,178,497 + +0.2 1,178,497 + +0.7 1,178,497 + -0.9 1,178,497 + -1.1 1,178,498 - -1.6 1,178,498 - +2.1 1,178,498 - -1.0 1,178,498 - +0.6 1,178,657 + -0.3 1,178,860 + -0.2 1,178,868 + -0.3 1,178,868 + -0.2 1,178,872 + +0.9 1,178,872 + -1.0 1,178,872 + +0.0 1,178,872 + -0.4 1,178,872 + -0.3 1,178,873 - +0.7 1,178,905 + +0.7 1,178,905 + +0.8 1,178,905 + +0.0 1,178,905 + -0.4 1,178,905 + -1.6 1,178,905 + +0.4 1,178,906 - -1.5 1,178,906 - +1.5 1,178,907 + -1.6 1,178,979 + +1.5 1,178,979 + +0.9 1,178,979 + -1.1 1,178,979 + +1.4 1,178,979 + -1.2 1,178,979 + -0.8 1,178,984 - -0.4 1,179,210 + Pf6N2E2_1009 0.60 -1.6 1,179,210 + Pf6N2E2_1009 0.60 -0.9 1,179,211 - Pf6N2E2_1009 0.60 +0.1 1,179,264 + Pf6N2E2_1009 0.87 -0.8 1,179,321 + +1.0 1,179,347 + +0.3 1,179,347 + +0.0 1,179,348 - +1.6 1,179,348 - +0.2 1,179,405 - -0.2 1,179,485 - +0.0 1,179,787 + Pf6N2E2_1010 0.23 +0.7 1,179,809 + Pf6N2E2_1010 0.25 -0.4 1,179,810 - Pf6N2E2_1010 0.25 +0.1 1,179,837 - Pf6N2E2_1010 0.27 -0.9 1,179,899 + Pf6N2E2_1010 0.32 -0.4 1,179,900 - Pf6N2E2_1010 0.33 +0.0 1,179,995 + Pf6N2E2_1010 0.40 +1.0 1,179,995 + Pf6N2E2_1010 0.40 -0.1 1,180,040 + Pf6N2E2_1010 0.44 -0.1 1,180,253 + Pf6N2E2_1010 0.61 -1.2
Or see this region's nucleotide sequence