Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05405

Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 FREE

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS05400 and MMP_RS05405 are separated by 34 nucleotidesMMP_RS05405 and MMP_RS05410 are separated by 46 nucleotidesMMP_RS05410 and MMP_RS05415 are separated by 21 nucleotides MMP_RS05400: MMP_RS05400 - ATP synthase subunit A, at 1,036,729 to 1,038,489 _RS05400 MMP_RS05405: MMP_RS05405 - V-type ATP synthase subunit B, at 1,038,524 to 1,039,912 _RS05405 MMP_RS05410: MMP_RS05410 - V-type ATP synthase subunit D, at 1,039,959 to 1,040,603 _RS05410 MMP_RS05415: MMP_RS05415 - DUF22 domain-containing protein, at 1,040,625 to 1,040,990 _RS05415 Position (kb) 1038 1039 1040Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1038.038 kb on + strandat 1040.140 kb on + strandat 1040.826 kb on - strand, within MMP_RS05415at 1040.827 kb on + strand, within MMP_RS05415at 1040.827 kb on + strand, within MMP_RS05415

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 FREE
remove
1,038,038 + -4.2
1,040,140 + -2.2
1,040,826 - MMP_RS05415 0.55 -0.7
1,040,827 + MMP_RS05415 0.55 -2.4
1,040,827 + MMP_RS05415 0.55 -3.0

Or see this region's nucleotide sequence