Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04765

Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04755 and MMP_RS04760 are separated by 63 nucleotidesMMP_RS04760 and MMP_RS04765 are separated by 45 nucleotidesMMP_RS04765 and MMP_RS04770 are separated by 97 nucleotidesMMP_RS04770 and MMP_RS04775 are separated by 31 nucleotides MMP_RS04755: MMP_RS04755 - PRC-barrel domain-containing protein, at 905,585 to 905,833 _RS04755 MMP_RS04760: MMP_RS04760 - diaminopimelate epimerase, at 905,897 to 906,730 _RS04760 MMP_RS04765: MMP_RS04765 - asparagine synthase (glutamine-hydrolyzing), at 906,776 to 908,317 _RS04765 MMP_RS04770: MMP_RS04770 - dihydroorotate dehydrogenase electron transfer subunit, at 908,415 to 909,182 _RS04770 MMP_RS04775: MMP_RS04775 - adenosylhomocysteinase, at 909,214 to 910,461 _RS04775 Position (kb) 906 907 908 909Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 905.786 kb on + strandat 905.800 kb on - strandat 905.831 kb on - strandat 905.874 kb on + strandat 905.882 kb on - strandat 905.882 kb on - strandat 905.882 kb on - strandat 905.882 kb on - strandat 905.882 kb on - strandat 905.882 kb on - strandat 905.882 kb on - strandat 905.882 kb on - strandat 905.883 kb on + strandat 905.883 kb on + strandat 905.883 kb on + strandat 905.883 kb on + strandat 905.883 kb on + strandat 905.883 kb on + strandat 905.884 kb on - strandat 905.884 kb on - strandat 905.885 kb on + strandat 905.923 kb on + strandat 905.933 kb on - strandat 905.935 kb on - strandat 905.939 kb on - strandat 905.939 kb on - strandat 905.940 kb on + strandat 905.944 kb on + strandat 906.199 kb on + strandat 906.348 kb on + strandat 906.387 kb on - strandat 906.392 kb on - strandat 906.392 kb on - strandat 906.392 kb on - strandat 906.392 kb on - strandat 906.392 kb on - strandat 906.393 kb on + strandat 906.405 kb on - strandat 906.430 kb on + strandat 906.680 kb on - strandat 906.680 kb on - strandat 906.681 kb on + strandat 906.742 kb on + strandat 906.758 kb on - strandat 906.798 kb on + strandat 906.820 kb on - strandat 906.821 kb on + strandat 906.861 kb on - strandat 906.862 kb on + strandat 906.922 kb on + strandat 907.090 kb on - strandat 907.221 kb on + strandat 907.322 kb on - strandat 907.330 kb on + strandat 907.404 kb on - strandat 907.506 kb on - strandat 907.507 kb on + strandat 907.507 kb on + strandat 907.545 kb on + strandat 907.587 kb on + strandat 907.675 kb on - strandat 907.676 kb on + strandat 907.706 kb on + strandat 907.813 kb on + strandat 907.855 kb on - strandat 907.901 kb on - strandat 907.913 kb on - strandat 907.913 kb on - strandat 907.930 kb on - strandat 907.930 kb on - strandat 907.931 kb on + strandat 908.039 kb on + strandat 908.051 kb on + strandat 908.160 kb on - strandat 908.161 kb on + strandat 908.231 kb on - strandat 908.231 kb on - strandat 908.232 kb on + strandat 908.294 kb on - strandat 908.322 kb on + strandat 908.362 kb on - strandat 908.376 kb on + strandat 908.376 kb on + strandat 908.376 kb on + strandat 908.376 kb on + strandat 908.377 kb on - strandat 908.377 kb on - strandat 908.377 kb on - strandat 908.378 kb on + strandat 908.378 kb on + strandat 908.378 kb on + strandat 908.378 kb on + strandat 908.378 kb on + strandat 908.381 kb on - strandat 908.381 kb on - strandat 908.382 kb on + strandat 908.418 kb on - strandat 908.418 kb on - strandat 908.463 kb on - strandat 908.570 kb on + strandat 908.654 kb on - strandat 908.658 kb on - strandat 908.659 kb on + strandat 908.864 kb on - strandat 909.183 kb on + strandat 909.185 kb on - strandat 909.243 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 FREE
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905,786 + +2.4
905,800 - -3.2
905,831 - -0.7
905,874 + -1.7
905,882 - -3.1
905,882 - -4.5
905,882 - -2.5
905,882 - -2.6
905,882 - -1.7
905,882 - -3.7
905,882 - -3.3
905,882 - -3.3
905,883 + -2.2
905,883 + -1.7
905,883 + -1.4
905,883 + -1.6
905,883 + -3.3
905,883 + -2.1
905,884 - -4.0
905,884 - -3.6
905,885 + -0.3
905,923 + -3.3
905,933 - -4.3
905,935 - -4.1
905,939 - -3.2
905,939 - -4.6
905,940 + -5.2
905,944 + -3.8
906,199 + -2.7
906,348 + -4.5
906,387 - -4.0
906,392 - -4.3
906,392 - -4.4
906,392 - -3.3
906,392 - -4.5
906,392 - -4.1
906,393 + -4.4
906,405 - -5.6
906,430 + -3.3
906,680 - -3.2
906,680 - -4.0
906,681 + -3.7
906,742 + +0.4
906,758 - +0.4
906,798 + -0.9
906,820 - -3.3
906,821 + -2.7
906,861 - -2.9
906,862 + -1.8
906,922 + -5.2
907,090 - -3.3
907,221 + -2.0
907,322 - -4.3
907,330 + -3.3
907,404 - -5.1
907,506 - -4.3
907,507 + -1.5
907,507 + -2.7
907,545 + -4.4
907,587 + -3.8
907,675 - -3.1
907,676 + -3.3
907,706 + -2.2
907,813 + -4.8
907,855 - -4.1
907,901 - -2.8
907,913 - -3.7
907,913 - -3.2
907,930 - -3.3
907,930 - -4.2
907,931 + -4.2
908,039 + -3.0
908,051 + -2.9
908,160 - -4.2
908,161 + -4.5
908,231 - -3.5
908,231 - -2.8
908,232 + -1.3
908,294 - -4.0
908,322 + -3.7
908,362 - -4.6
908,376 + -3.3
908,376 + -2.2
908,376 + -4.2
908,376 + -3.3
908,377 - -3.1
908,377 - -4.4
908,377 - -2.0
908,378 + -2.8
908,378 + -3.6
908,378 + -4.5
908,378 + -4.0
908,378 + -4.2
908,381 - -1.5
908,381 - -1.6
908,382 + -3.0
908,418 - +0.4
908,418 - +0.2
908,463 - -4.6
908,570 + -3.7
908,654 - -3.5
908,658 - -4.9
908,659 + -5.2
908,864 - -4.0
909,183 + -3.3
909,185 - -4.4
909,243 + -3.3

Or see this region's nucleotide sequence