Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17245

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
3,767,783	+				-0.1
3,767,783	+				+0.2
3,767,783	+				+0.0
3,767,783	+				+0.5
3,767,783	+				-0.7
3,767,783	+				+0.0
3,767,783	+				+1.3
3,767,783	+				+0.1
3,767,783	+				+0.0
3,767,783	+				-0.5
3,767,783	+				+0.3
3,767,783	+				+0.0
3,767,783	+				+0.5
3,767,784	-				-0.8
3,767,784	-				-1.4
3,767,784	-				+1.1
3,767,784	-				+1.3
3,767,784	-				+0.5
3,767,784	-				+1.9
3,767,808	+				+0.2
3,767,808	+				+0.7
3,767,808	+				+2.5
3,767,808	+				-0.3
3,767,808	+				-0.4
3,767,808	+				-0.7
3,767,809	-				+0.4
3,767,809	-				-0.3
3,767,809	-				-0.9
3,767,809	-				+0.2
3,767,809	-				+0.5
3,767,918	+		LRK54_RS17245	0.21	+0.0
3,767,918	+		LRK54_RS17245	0.21	+0.8
3,767,918	+		LRK54_RS17245	0.21	+0.0
3,767,918	+		LRK54_RS17245	0.21	+0.9
3,767,919	-		LRK54_RS17245	0.21	+0.1
3,767,919	-		LRK54_RS17245	0.21	+1.1
3,767,919	-		LRK54_RS17245	0.21	-0.1
3,767,919	-		LRK54_RS17245	0.21	+0.6
3,767,919	-		LRK54_RS17245	0.21	-0.7
3,767,919	-		LRK54_RS17245	0.21	+1.1
3,767,919	-		LRK54_RS17245	0.21	+0.3
3,767,919	-		LRK54_RS17245	0.21	-0.2
3,767,919	-		LRK54_RS17245	0.21	+0.1
3,767,919	-		LRK54_RS17245	0.21	+0.2
3,768,261	+		LRK54_RS17245	0.64	+0.5
3,768,262	-		LRK54_RS17245	0.64	-0.5
3,768,262	-		LRK54_RS17245	0.64	-0.5
3,768,262	-		LRK54_RS17245	0.64	-0.3
3,768,293	+		LRK54_RS17245	0.68	-0.1
3,768,293	+		LRK54_RS17245	0.68	-0.5
3,768,293	+		LRK54_RS17245	0.68	+1.1
3,768,293	+		LRK54_RS17245	0.68	-1.2
3,768,294	-		LRK54_RS17245	0.68	+4.5
3,768,294	-		LRK54_RS17245	0.68	-1.2
3,768,294	-		LRK54_RS17245	0.68	+0.5
3,768,294	-		LRK54_RS17245	0.68	-1.1
3,768,294	-		LRK54_RS17245	0.68	+0.6
3,768,327	-		LRK54_RS17245	0.72	+0.5
3,768,388	+		LRK54_RS17245	0.80	+0.3
3,768,388	+		LRK54_RS17245	0.80	+1.9
3,768,388	+		LRK54_RS17245	0.80	-0.0
3,768,388	+		LRK54_RS17245	0.80	+1.3
3,768,389	-		LRK54_RS17245	0.80	+1.4
3,768,419	+		LRK54_RS17245	0.84	-0.0
3,768,419	+		LRK54_RS17245	0.84	+2.1
3,768,419	+		LRK54_RS17245	0.84	+0.7
3,768,419	+		LRK54_RS17245	0.84	-0.3
3,768,419	+		LRK54_RS17245	0.84	+0.4
3,768,419	+		LRK54_RS17245	0.84	+0.4
3,768,419	+		LRK54_RS17245	0.84	+0.2
3,768,419	+		LRK54_RS17245	0.84	-0.6
3,768,419	+		LRK54_RS17245	0.84	+1.1
3,768,419	+		LRK54_RS17245	0.84	-0.2
3,768,419	+		LRK54_RS17245	0.84	-0.3
3,768,419	+		LRK54_RS17245	0.84	+0.3
3,768,419	+		LRK54_RS17245	0.84	+0.2
3,768,419	+		LRK54_RS17245	0.84	+0.1
3,768,420	-		LRK54_RS17245	0.84	+0.0
3,768,420	-		LRK54_RS17245	0.84	-0.5
3,768,420	-		LRK54_RS17245	0.84	-0.6
3,768,420	-		LRK54_RS17245	0.84	-1.1
3,768,420	-		LRK54_RS17245	0.84	-1.2
3,768,420	-		LRK54_RS17245	0.84	+0.8
3,768,420	-		LRK54_RS17245	0.84	+1.6
3,768,455	+		LRK54_RS17245	0.88	-0.0
3,768,455	+		LRK54_RS17245	0.88	+2.5
3,768,455	+		LRK54_RS17245	0.88	-0.5
3,768,455	+		LRK54_RS17245	0.88	+0.1
3,768,455	+		LRK54_RS17245	0.88	-0.3
3,768,456	-		LRK54_RS17245	0.89	-0.3
3,768,456	-		LRK54_RS17245	0.89	-1.6
3,768,456	-		LRK54_RS17245	0.89	-0.3
3,768,456	-		LRK54_RS17245	0.89	-0.2
3,768,456	-		LRK54_RS17245	0.89	-0.2
3,768,456	-		LRK54_RS17245	0.89	-0.4
3,768,456	-		LRK54_RS17245	0.89	+0.3
3,768,456	-		LRK54_RS17245	0.89	+1.2
3,768,456	-		LRK54_RS17245	0.89	+1.2
3,768,456	-		LRK54_RS17245	0.89	-0.3
3,768,456	-		LRK54_RS17245	0.89	+0.7
3,768,518	+				+0.1
3,768,518	+				-0.8
3,768,518	+				-0.2
3,768,518	+				-1.0
3,768,518	+				+0.1
3,768,518	+				+0.2
3,768,518	+				-0.6
3,768,518	+				+2.9
3,768,518	+				+0.7
3,768,518	+				-0.3
3,768,518	+				-0.8
3,768,518	+				+0.1
3,768,518	+				+1.1
3,768,519	-				+1.2
3,768,519	-				+0.9
3,768,519	-				+0.2
3,768,519	-				+0.6
3,768,519	-				+1.1
3,768,519	-				-0.1
3,768,519	-				-1.0
3,768,519	-				+0.2
3,768,519	-				+0.3
3,768,688	+		LRK54_RS17250	0.19	+0.9
3,768,688	+		LRK54_RS17250	0.19	+0.5
3,768,688	+		LRK54_RS17250	0.19	-0.3
3,768,688	+		LRK54_RS17250	0.19	+0.0
3,768,688	+		LRK54_RS17250	0.19	-0.3
3,768,688	+		LRK54_RS17250	0.19	-0.1
3,768,688	+		LRK54_RS17250	0.19	-0.5
3,768,688	+		LRK54_RS17250	0.19	+1.1
3,768,688	+		LRK54_RS17250	0.19	-0.7
3,768,688	+		LRK54_RS17250	0.19	-0.1
3,768,688	+		LRK54_RS17250	0.19	+0.1
3,768,688	+		LRK54_RS17250	0.19	-0.6
3,768,689	-		LRK54_RS17250	0.19	+0.2
3,768,689	-		LRK54_RS17250	0.19	-1.0
3,768,689	-		LRK54_RS17250	0.19	-0.4
3,768,689	-		LRK54_RS17250	0.19	+0.7
3,768,689	-		LRK54_RS17250	0.19	+1.0
3,768,689	-		LRK54_RS17250	0.19	+0.1
3,768,689	-		LRK54_RS17250	0.19	+0.7
3,768,689	-		LRK54_RS17250	0.19	+0.4
3,768,689	-		LRK54_RS17250	0.19	+0.5
3,768,834	+		LRK54_RS17250	0.39	+0.0
3,768,834	+		LRK54_RS17250	0.39	+0.3
3,768,834	+		LRK54_RS17250	0.39	-1.0
3,768,834	+		LRK54_RS17250	0.39	-0.3
3,768,834	+		LRK54_RS17250	0.39	+0.5
3,768,834	+		LRK54_RS17250	0.39	-0.1
3,768,834	+		LRK54_RS17250	0.39	-0.5
3,768,834	+		LRK54_RS17250	0.39	+0.4
3,768,834	+		LRK54_RS17250	0.39	+2.3
3,768,834	+		LRK54_RS17250	0.39	+2.2
3,768,835	-		LRK54_RS17250	0.39	+0.2
3,768,835	-		LRK54_RS17250	0.39	+1.1
3,768,835	-		LRK54_RS17250	0.39	+1.2
3,768,835	-		LRK54_RS17250	0.39	-0.1
3,768,835	-		LRK54_RS17250	0.39	-0.5
3,768,835	-		LRK54_RS17250	0.39	-1.5
3,768,835	-		LRK54_RS17250	0.39	+2.5
3,768,835	-		LRK54_RS17250	0.39	+0.7
3,768,835	-		LRK54_RS17250	0.39	+1.2
3,768,835	-		LRK54_RS17250	0.39	-0.4
3,768,835	-		LRK54_RS17250	0.39	-0.2
3,768,835	-		LRK54_RS17250	0.39	+0.8
3,768,909	+		LRK54_RS17250	0.49	-1.0
3,768,909	+		LRK54_RS17250	0.49	+0.1
3,768,909	+		LRK54_RS17250	0.49	+1.5
3,768,909	+		LRK54_RS17250	0.49	-0.1
3,768,909	+		LRK54_RS17250	0.49	-1.5
3,768,909	+		LRK54_RS17250	0.49	+0.6
3,768,909	+		LRK54_RS17250	0.49	+1.1
3,768,909	+		LRK54_RS17250	0.49	-0.7
3,768,909	+		LRK54_RS17250	0.49	-0.9
3,768,909	+		LRK54_RS17250	0.49	-0.3
3,768,910	-		LRK54_RS17250	0.49	+0.1
3,768,910	-		LRK54_RS17250	0.49	-0.3
3,768,910	-		LRK54_RS17250	0.49	+0.7
3,768,910	-		LRK54_RS17250	0.49	+1.2
3,768,910	-		LRK54_RS17250	0.49	+0.2
3,768,910	-		LRK54_RS17250	0.49	-0.2
3,768,910	-		LRK54_RS17250	0.49	+1.1
3,768,910	-		LRK54_RS17250	0.49	-0.8
3,768,910	-		LRK54_RS17250	0.49	-0.3
3,768,910	-		LRK54_RS17250	0.49	+1.4
3,769,069	+		LRK54_RS17250	0.71	-1.2
3,769,069	+		LRK54_RS17250	0.71	-1.6
3,769,069	+		LRK54_RS17250	0.71	+0.5
3,769,070	-		LRK54_RS17250	0.71	-0.4
3,769,149	+		LRK54_RS17250	0.82	-0.4
3,769,149	+		LRK54_RS17250	0.82	+1.6
3,769,149	+		LRK54_RS17250	0.82	-0.1
3,769,149	+		LRK54_RS17250	0.82	+0.2
3,769,149	+		LRK54_RS17250	0.82	-0.1
3,769,149	+		LRK54_RS17250	0.82	+0.0
3,769,149	+		LRK54_RS17250	0.82	+1.1
3,769,149	+		LRK54_RS17250	0.82	+0.1
3,769,149	+		LRK54_RS17250	0.82	-0.1
3,769,149	+		LRK54_RS17250	0.82	-0.5
3,769,149	+		LRK54_RS17250	0.82	+0.8
3,769,150	-		LRK54_RS17250	0.82	+2.5
3,769,150	-		LRK54_RS17250	0.82	+0.1
3,769,150	-		LRK54_RS17250	0.82	-0.7
3,769,150	-		LRK54_RS17250	0.82	+0.0
3,769,150	-		LRK54_RS17250	0.82	+0.3
3,769,150	-		LRK54_RS17250	0.82	+1.4
3,769,150	-		LRK54_RS17250	0.82	-0.3
3,769,150	-		LRK54_RS17250	0.82	+2.2
3,769,150	-		LRK54_RS17250	0.82	+0.2
3,769,150	-		LRK54_RS17250	0.82	+0.4
3,769,150	-		LRK54_RS17250	0.82	-0.1
3,769,150	-		LRK54_RS17250	0.82	+1.5
3,769,150	-		LRK54_RS17250	0.82	-0.0
3,769,150	-		LRK54_RS17250	0.82	+1.6
3,769,304	+				+1.9
3,769,304	+				-0.2
3,769,304	+				+0.2
3,769,304	+				+0.0
3,769,304	+				+0.6
3,769,304	+				+1.5
3,769,305	-				-0.3
3,769,305	-				+1.5
3,769,305	-				+1.9
3,769,305	-				+0.1
3,769,334	+				+1.5
3,769,334	+				+1.7
3,769,334	+				-0.3
3,769,334	+				+0.8
3,769,334	+				+0.1
3,769,334	+				+0.1
3,769,334	+				+1.9
3,769,334	+				-0.0
3,769,334	+				-0.2
3,769,334	+				+0.5
3,769,334	+				-0.6
3,769,334	+				+0.9
3,769,334	+				+0.0
3,769,334	+				-1.2
3,769,334	+				+0.1
3,769,334	+				+0.5
3,769,335	-				-0.0
3,769,335	-				+0.6
3,769,335	-				-0.2
3,769,335	-				-0.4
3,769,335	-				-0.0
3,769,335	-				-0.1
3,769,335	-				+0.4
3,769,335	-				-0.3
3,769,335	-				-0.6
3,769,335	-				-0.1
3,769,335	-				-0.5
3,769,335	-				+0.5
3,769,335	-				+0.4
3,769,335	-				+0.1
3,769,335	-				+0.1
3,769,335	-				-0.2
3,769,406	+		LRK54_RS17255	0.11	+0.9
3,769,407	-		LRK54_RS17255	0.11	+0.5
3,769,407	-		LRK54_RS17255	0.11	-2.1
3,769,407	-		LRK54_RS17255	0.11	+2.1
3,769,521	-		LRK54_RS17255	0.21	+0.8
3,769,521	-		LRK54_RS17255	0.21	+0.7
3,769,523	+		LRK54_RS17255	0.22	-0.8
3,769,523	+		LRK54_RS17255	0.22	+0.5
3,769,523	+		LRK54_RS17255	0.22	+0.2
3,769,523	+		LRK54_RS17255	0.22	+1.2
3,769,523	+		LRK54_RS17255	0.22	-0.4
3,769,523	+		LRK54_RS17255	0.22	+2.1
3,769,523	+		LRK54_RS17255	0.22	+0.4
3,769,523	+		LRK54_RS17255	0.22	-0.2
3,769,523	+		LRK54_RS17255	0.22	-0.7
3,769,523	+		LRK54_RS17255	0.22	-0.4
3,769,523	+		LRK54_RS17255	0.22	+0.0
3,769,523	+		LRK54_RS17255	0.22	-1.3
3,769,523	+		LRK54_RS17255	0.22	-0.4
3,769,523	+		LRK54_RS17255	0.22	-1.1
3,769,523	+		LRK54_RS17255	0.22	-1.0
3,769,524	-		LRK54_RS17255	0.22	+1.5
3,769,524	-		LRK54_RS17255	0.22	+0.4
3,769,524	-		LRK54_RS17255	0.22	+0.1
3,769,524	-		LRK54_RS17255	0.22	+1.3
3,769,524	-		LRK54_RS17255	0.22	-0.3
3,769,524	-		LRK54_RS17255	0.22	-0.2
3,769,524	-		LRK54_RS17255	0.22	-1.2
3,769,524	-		LRK54_RS17255	0.22	-0.3
3,769,524	-		LRK54_RS17255	0.22	+1.1
3,769,524	-		LRK54_RS17255	0.22	+0.1
3,769,524	-		LRK54_RS17255	0.22	+2.9
3,769,524	-		LRK54_RS17255	0.22	-0.7
3,769,524	-		LRK54_RS17255	0.22	-0.5
3,769,524	-		LRK54_RS17255	0.22	-0.6
3,769,524	-		LRK54_RS17255	0.22	-0.3
3,769,524	-		LRK54_RS17255	0.22	+0.5
3,769,524	-		LRK54_RS17255	0.22	-0.3