Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS25025 and CA265_RS25030 are separated by 466 nucleotides CA265_RS25030 and CA265_RS25035 are separated by 145 nucleotides
CA265_RS25025: CA265_RS25025 - N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA, at 6,094,340 to 6,095,488
_RS25025
CA265_RS25030: CA265_RS25030 - hypothetical protein, at 6,095,955 to 6,096,218
_RS25030
CA265_RS25035: CA265_RS25035 - molecular chaperone DnaJ, at 6,096,364 to 6,096,810
_RS25035
Position (kb)
6095
6096
6097 Strain fitness (log2 ratio)
-2
-1
0
1 at 6095.443 kb on + strand at 6095.443 kb on + strand at 6095.558 kb on + strand at 6095.558 kb on + strand at 6095.558 kb on + strand at 6095.559 kb on - strand at 6095.559 kb on - strand at 6095.615 kb on - strand at 6095.615 kb on - strand at 6095.628 kb on - strand at 6095.684 kb on + strand at 6095.684 kb on + strand at 6095.706 kb on + strand at 6095.735 kb on - strand at 6095.790 kb on - strand at 6095.791 kb on + strand at 6095.846 kb on + strand at 6095.879 kb on + strand at 6095.880 kb on - strand at 6095.883 kb on - strand at 6095.937 kb on + strand at 6095.937 kb on + strand at 6095.964 kb on - strand at 6096.041 kb on - strand, within CA265_RS25030 at 6096.041 kb on - strand, within CA265_RS25030 at 6096.155 kb on - strand, within CA265_RS25030 at 6096.155 kb on - strand, within CA265_RS25030 at 6096.214 kb on - strand at 6096.214 kb on - strand at 6096.238 kb on + strand at 6096.315 kb on - strand at 6096.375 kb on - strand at 6096.383 kb on - strand at 6096.429 kb on + strand at 6096.430 kb on - strand, within CA265_RS25035 at 6096.498 kb on - strand, within CA265_RS25035 at 6096.498 kb on - strand, within CA265_RS25035 at 6096.516 kb on + strand, within CA265_RS25035 at 6096.552 kb on + strand, within CA265_RS25035 at 6096.553 kb on - strand, within CA265_RS25035 at 6096.553 kb on - strand, within CA265_RS25035 at 6096.589 kb on + strand, within CA265_RS25035 at 6096.592 kb on - strand, within CA265_RS25035 at 6096.652 kb on - strand, within CA265_RS25035 at 6096.677 kb on - strand, within CA265_RS25035 at 6096.677 kb on - strand, within CA265_RS25035 at 6096.721 kb on - strand, within CA265_RS25035 at 6096.767 kb on - strand at 6096.781 kb on - strand at 6096.829 kb on + strand at 6096.829 kb on + strand at 6096.882 kb on + strand at 6096.911 kb on - strand at 6096.913 kb on - strand at 6096.968 kb on + strand at 6097.010 kb on + strand at 6097.031 kb on + strand at 6097.031 kb on + strand at 6097.031 kb on + strand at 6097.087 kb on + strand at 6097.160 kb on + strand at 6097.160 kb on + strand at 6097.160 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 6,095,443 + +0.1 6,095,443 + -0.3 6,095,558 + +1.2 6,095,558 + +0.1 6,095,558 + -0.5 6,095,559 - -1.0 6,095,559 - -0.3 6,095,615 - -0.7 6,095,615 - +0.5 6,095,628 - +0.2 6,095,684 + +0.6 6,095,684 + +0.3 6,095,706 + -1.5 6,095,735 - -0.5 6,095,790 - +1.3 6,095,791 + -0.6 6,095,846 + -0.7 6,095,879 + -2.5 6,095,880 - +0.3 6,095,883 - -0.1 6,095,937 + +0.2 6,095,937 + +0.9 6,095,964 - +0.3 6,096,041 - CA265_RS25030 0.33 +0.5 6,096,041 - CA265_RS25030 0.33 +0.2 6,096,155 - CA265_RS25030 0.76 +0.4 6,096,155 - CA265_RS25030 0.76 -1.1 6,096,214 - +0.4 6,096,214 - +0.9 6,096,238 + -1.1 6,096,315 - +0.1 6,096,375 - -0.2 6,096,383 - -0.1 6,096,429 + +0.9 6,096,430 - CA265_RS25035 0.15 -0.1 6,096,498 - CA265_RS25035 0.30 +0.5 6,096,498 - CA265_RS25035 0.30 +0.9 6,096,516 + CA265_RS25035 0.34 -0.6 6,096,552 + CA265_RS25035 0.42 +0.2 6,096,553 - CA265_RS25035 0.42 +1.6 6,096,553 - CA265_RS25035 0.42 -0.6 6,096,589 + CA265_RS25035 0.50 -0.1 6,096,592 - CA265_RS25035 0.51 +0.7 6,096,652 - CA265_RS25035 0.64 +0.0 6,096,677 - CA265_RS25035 0.70 +0.4 6,096,677 - CA265_RS25035 0.70 +0.1 6,096,721 - CA265_RS25035 0.80 -0.3 6,096,767 - +0.3 6,096,781 - +0.2 6,096,829 + -1.0 6,096,829 + +0.1 6,096,882 + -0.5 6,096,911 - -0.9 6,096,913 - -0.2 6,096,968 + +1.0 6,097,010 + -0.6 6,097,031 + -0.6 6,097,031 + +0.3 6,097,031 + +0.0 6,097,087 + -0.1 6,097,160 + +0.4 6,097,160 + +0.2 6,097,160 + -0.0
Or see this region's nucleotide sequence