Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS24375 and CA265_RS24380 are separated by 5 nucleotides CA265_RS24380 and CA265_RS24385 are separated by 8 nucleotides CA265_RS24385 and CA265_RS24390 are separated by 385 nucleotides
CA265_RS24375: CA265_RS24375 - hypothetical protein, at 5,934,325 to 5,934,540
_RS24375
CA265_RS24380: CA265_RS24380 - hypothetical protein, at 5,934,546 to 5,935,121
_RS24380
CA265_RS24385: CA265_RS24385 - GNAT family N-acetyltransferase, at 5,935,130 to 5,935,630
_RS24385
CA265_RS24390: CA265_RS24390 - TonB-dependent receptor, at 5,936,016 to 5,939,267
_RS24390
Position (kb) 5935
5936 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5934.176 kb on + strand at 5934.203 kb on + strand at 5934.551 kb on + strand at 5934.609 kb on - strand, within CA265_RS24380 at 5934.727 kb on + strand, within CA265_RS24380 at 5934.777 kb on + strand, within CA265_RS24380 at 5934.778 kb on - strand, within CA265_RS24380 at 5934.827 kb on - strand, within CA265_RS24380 at 5934.827 kb on - strand, within CA265_RS24380 at 5934.848 kb on - strand, within CA265_RS24380 at 5934.886 kb on + strand, within CA265_RS24380 at 5934.887 kb on - strand, within CA265_RS24380 at 5934.890 kb on + strand, within CA265_RS24380 at 5934.891 kb on - strand, within CA265_RS24380 at 5934.891 kb on - strand, within CA265_RS24380 at 5934.933 kb on + strand, within CA265_RS24380 at 5935.080 kb on + strand at 5935.084 kb on - strand at 5935.119 kb on + strand at 5935.132 kb on - strand at 5935.273 kb on + strand, within CA265_RS24385 at 5935.311 kb on - strand, within CA265_RS24385 at 5935.349 kb on + strand, within CA265_RS24385 at 5935.475 kb on + strand, within CA265_RS24385 at 5935.490 kb on - strand, within CA265_RS24385 at 5935.492 kb on + strand, within CA265_RS24385 at 5935.590 kb on - strand at 5935.622 kb on - strand at 5935.622 kb on - strand at 5935.658 kb on + strand at 5935.658 kb on + strand at 5935.696 kb on - strand at 5935.727 kb on - strand at 5935.853 kb on - strand at 5935.906 kb on - strand at 5936.032 kb on + strand at 5936.033 kb on - strand at 5936.096 kb on + strand at 5936.171 kb on + strand at 5936.172 kb on - strand at 5936.176 kb on + strand at 5936.296 kb on - strand at 5936.306 kb on - strand at 5936.348 kb on + strand at 5936.349 kb on - strand, within CA265_RS24390 at 5936.365 kb on + strand, within CA265_RS24390 at 5936.433 kb on - strand, within CA265_RS24390 at 5936.471 kb on - strand, within CA265_RS24390 at 5936.529 kb on + strand, within CA265_RS24390 at 5936.539 kb on + strand, within CA265_RS24390 at 5936.539 kb on + strand, within CA265_RS24390 at 5936.558 kb on + strand, within CA265_RS24390 at 5936.580 kb on - strand, within CA265_RS24390 at 5936.590 kb on + strand, within CA265_RS24390 at 5936.591 kb on - strand, within CA265_RS24390 at 5936.630 kb on + strand, within CA265_RS24390
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,934,176 + -0.3 5,934,203 + -0.3 5,934,551 + -0.9 5,934,609 - CA265_RS24380 0.11 +0.2 5,934,727 + CA265_RS24380 0.31 +0.2 5,934,777 + CA265_RS24380 0.40 +0.9 5,934,778 - CA265_RS24380 0.40 +0.1 5,934,827 - CA265_RS24380 0.49 +0.1 5,934,827 - CA265_RS24380 0.49 -0.8 5,934,848 - CA265_RS24380 0.52 -0.1 5,934,886 + CA265_RS24380 0.59 +0.2 5,934,887 - CA265_RS24380 0.59 -0.4 5,934,890 + CA265_RS24380 0.60 -0.7 5,934,891 - CA265_RS24380 0.60 -0.3 5,934,891 - CA265_RS24380 0.60 +0.6 5,934,933 + CA265_RS24380 0.67 +0.6 5,935,080 + -2.1 5,935,084 - -0.8 5,935,119 + +0.3 5,935,132 - -0.1 5,935,273 + CA265_RS24385 0.29 +0.8 5,935,311 - CA265_RS24385 0.36 -0.9 5,935,349 + CA265_RS24385 0.44 -0.3 5,935,475 + CA265_RS24385 0.69 +0.9 5,935,490 - CA265_RS24385 0.72 +1.9 5,935,492 + CA265_RS24385 0.72 +0.3 5,935,590 - +1.1 5,935,622 - -0.8 5,935,622 - -0.8 5,935,658 + +0.0 5,935,658 + +0.9 5,935,696 - -0.2 5,935,727 - -0.3 5,935,853 - +0.8 5,935,906 - +0.3 5,936,032 + -0.7 5,936,033 - +0.5 5,936,096 + -0.0 5,936,171 + +0.6 5,936,172 - -0.2 5,936,176 + +0.4 5,936,296 - -0.2 5,936,306 - -0.0 5,936,348 + +3.9 5,936,349 - CA265_RS24390 0.10 -0.8 5,936,365 + CA265_RS24390 0.11 +0.3 5,936,433 - CA265_RS24390 0.13 +1.1 5,936,471 - CA265_RS24390 0.14 -0.2 5,936,529 + CA265_RS24390 0.16 +1.2 5,936,539 + CA265_RS24390 0.16 -1.7 5,936,539 + CA265_RS24390 0.16 +1.5 5,936,558 + CA265_RS24390 0.17 +0.2 5,936,580 - CA265_RS24390 0.17 +0.1 5,936,590 + CA265_RS24390 0.18 -0.7 5,936,591 - CA265_RS24390 0.18 +0.5 5,936,630 + CA265_RS24390 0.19 -0.6
Or see this region's nucleotide sequence