Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS24255 and CA265_RS24260 are separated by 144 nucleotides CA265_RS24260 and CA265_RS24265 are separated by 33 nucleotides CA265_RS24265 and CA265_RS24270 are separated by 303 nucleotides CA265_RS24270 and CA265_RS24275 are separated by 178 nucleotides
CA265_RS24255: CA265_RS24255 - sugar kinase, at 5,905,839 to 5,906,759
_RS24255
CA265_RS24260: CA265_RS24260 - tRNA-Asn, at 5,906,904 to 5,906,980
_RS24260
CA265_RS24265: CA265_RS24265 - hypothetical protein, at 5,907,014 to 5,907,385
_RS24265
CA265_RS24270: CA265_RS24270 - hypothetical protein, at 5,907,689 to 5,907,898
_RS24270
CA265_RS24275: CA265_RS24275 - hypothetical protein, at 5,908,077 to 5,908,427
_RS24275
Position (kb) 5907
5908 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5906.074 kb on - strand, within CA265_RS24255 at 5906.074 kb on - strand, within CA265_RS24255 at 5906.165 kb on + strand, within CA265_RS24255 at 5906.253 kb on + strand, within CA265_RS24255 at 5906.254 kb on - strand, within CA265_RS24255 at 5906.267 kb on + strand, within CA265_RS24255 at 5906.294 kb on + strand, within CA265_RS24255 at 5906.295 kb on - strand, within CA265_RS24255 at 5906.405 kb on - strand, within CA265_RS24255 at 5906.420 kb on - strand, within CA265_RS24255 at 5906.541 kb on - strand, within CA265_RS24255 at 5906.636 kb on + strand, within CA265_RS24255 at 5906.637 kb on - strand, within CA265_RS24255 at 5906.641 kb on + strand, within CA265_RS24255 at 5906.647 kb on + strand, within CA265_RS24255 at 5906.734 kb on - strand at 5906.739 kb on - strand at 5906.807 kb on + strand at 5906.811 kb on + strand at 5906.854 kb on + strand at 5906.870 kb on + strand at 5906.902 kb on - strand at 5907.096 kb on - strand, within CA265_RS24265 at 5907.128 kb on + strand, within CA265_RS24265 at 5907.128 kb on + strand, within CA265_RS24265 at 5907.131 kb on - strand, within CA265_RS24265 at 5907.172 kb on + strand, within CA265_RS24265 at 5907.176 kb on - strand, within CA265_RS24265 at 5907.234 kb on - strand, within CA265_RS24265 at 5907.249 kb on + strand, within CA265_RS24265 at 5907.320 kb on - strand, within CA265_RS24265 at 5907.384 kb on - strand at 5907.591 kb on + strand at 5907.690 kb on + strand at 5907.732 kb on - strand, within CA265_RS24270 at 5907.756 kb on - strand, within CA265_RS24270 at 5907.759 kb on + strand, within CA265_RS24270 at 5907.763 kb on + strand, within CA265_RS24270 at 5907.763 kb on + strand, within CA265_RS24270 at 5907.763 kb on + strand, within CA265_RS24270 at 5907.763 kb on + strand, within CA265_RS24270 at 5907.764 kb on - strand, within CA265_RS24270 at 5907.921 kb on + strand at 5907.958 kb on - strand at 5907.973 kb on + strand at 5907.984 kb on + strand at 5908.074 kb on - strand at 5908.104 kb on - strand at 5908.121 kb on + strand, within CA265_RS24275 at 5908.141 kb on - strand, within CA265_RS24275 at 5908.150 kb on - strand, within CA265_RS24275 at 5908.161 kb on + strand, within CA265_RS24275 at 5908.162 kb on - strand, within CA265_RS24275 at 5908.164 kb on - strand, within CA265_RS24275 at 5908.202 kb on - strand, within CA265_RS24275 at 5908.216 kb on + strand, within CA265_RS24275 at 5908.248 kb on - strand, within CA265_RS24275 at 5908.303 kb on + strand, within CA265_RS24275 at 5908.303 kb on + strand, within CA265_RS24275 at 5908.304 kb on - strand, within CA265_RS24275 at 5908.310 kb on - strand, within CA265_RS24275 at 5908.348 kb on + strand, within CA265_RS24275 at 5908.359 kb on - strand, within CA265_RS24275 at 5908.359 kb on - strand, within CA265_RS24275
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,906,074 - CA265_RS24255 0.26 -1.0 5,906,074 - CA265_RS24255 0.26 -1.3 5,906,165 + CA265_RS24255 0.35 +0.3 5,906,253 + CA265_RS24255 0.45 -0.9 5,906,254 - CA265_RS24255 0.45 -0.7 5,906,267 + CA265_RS24255 0.46 -0.1 5,906,294 + CA265_RS24255 0.49 -0.7 5,906,295 - CA265_RS24255 0.50 +0.5 5,906,405 - CA265_RS24255 0.61 +0.9 5,906,420 - CA265_RS24255 0.63 -0.7 5,906,541 - CA265_RS24255 0.76 -1.4 5,906,636 + CA265_RS24255 0.87 -0.6 5,906,637 - CA265_RS24255 0.87 -0.0 5,906,641 + CA265_RS24255 0.87 +1.9 5,906,647 + CA265_RS24255 0.88 -2.2 5,906,734 - -0.4 5,906,739 - -1.3 5,906,807 + +0.3 5,906,811 + -1.2 5,906,854 + +0.6 5,906,870 + +1.4 5,906,902 - -0.7 5,907,096 - CA265_RS24265 0.22 -0.6 5,907,128 + CA265_RS24265 0.31 +0.3 5,907,128 + CA265_RS24265 0.31 -0.4 5,907,131 - CA265_RS24265 0.31 -0.1 5,907,172 + CA265_RS24265 0.42 -0.1 5,907,176 - CA265_RS24265 0.44 -0.5 5,907,234 - CA265_RS24265 0.59 -0.5 5,907,249 + CA265_RS24265 0.63 -1.6 5,907,320 - CA265_RS24265 0.82 -0.5 5,907,384 - -0.2 5,907,591 + +1.4 5,907,690 + -0.2 5,907,732 - CA265_RS24270 0.20 +0.1 5,907,756 - CA265_RS24270 0.32 +0.5 5,907,759 + CA265_RS24270 0.33 +0.5 5,907,763 + CA265_RS24270 0.35 -0.2 5,907,763 + CA265_RS24270 0.35 +0.3 5,907,763 + CA265_RS24270 0.35 +0.1 5,907,763 + CA265_RS24270 0.35 +0.1 5,907,764 - CA265_RS24270 0.36 -0.1 5,907,921 + +0.1 5,907,958 - +0.4 5,907,973 + -0.1 5,907,984 + +0.5 5,908,074 - -1.3 5,908,104 - -0.2 5,908,121 + CA265_RS24275 0.13 +0.8 5,908,141 - CA265_RS24275 0.18 +0.1 5,908,150 - CA265_RS24275 0.21 -0.4 5,908,161 + CA265_RS24275 0.24 +0.3 5,908,162 - CA265_RS24275 0.24 +0.2 5,908,164 - CA265_RS24275 0.25 +0.0 5,908,202 - CA265_RS24275 0.36 +0.2 5,908,216 + CA265_RS24275 0.40 +1.6 5,908,248 - CA265_RS24275 0.49 -0.1 5,908,303 + CA265_RS24275 0.64 -1.0 5,908,303 + CA265_RS24275 0.64 +3.5 5,908,304 - CA265_RS24275 0.65 -0.5 5,908,310 - CA265_RS24275 0.66 -3.2 5,908,348 + CA265_RS24275 0.77 -0.6 5,908,359 - CA265_RS24275 0.80 -0.2 5,908,359 - CA265_RS24275 0.80 -0.3
Or see this region's nucleotide sequence