Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS23910 and CA265_RS23915 are separated by 17 nucleotides CA265_RS23915 and CA265_RS23920 are separated by 124 nucleotides
CA265_RS23910: CA265_RS23910 - serine hydrolase, at 5,831,995 to 5,833,563
_RS23910
CA265_RS23915: CA265_RS23915 - G-D-S-L family lipolytic protein, at 5,833,581 to 5,834,240
_RS23915
CA265_RS23920: CA265_RS23920 - DNA primase, at 5,834,365 to 5,836,344
_RS23920
Position (kb) 5833
5834
5835 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5832.592 kb on - strand, within CA265_RS23910 at 5832.596 kb on - strand, within CA265_RS23910 at 5832.625 kb on - strand, within CA265_RS23910 at 5832.636 kb on + strand, within CA265_RS23910 at 5832.636 kb on + strand, within CA265_RS23910 at 5832.637 kb on - strand, within CA265_RS23910 at 5832.637 kb on - strand, within CA265_RS23910 at 5832.816 kb on + strand, within CA265_RS23910 at 5832.816 kb on + strand, within CA265_RS23910 at 5832.930 kb on + strand, within CA265_RS23910 at 5832.957 kb on + strand, within CA265_RS23910 at 5833.019 kb on + strand, within CA265_RS23910 at 5833.051 kb on - strand, within CA265_RS23910 at 5833.051 kb on - strand, within CA265_RS23910 at 5833.051 kb on - strand, within CA265_RS23910 at 5833.051 kb on - strand, within CA265_RS23910 at 5833.051 kb on - strand, within CA265_RS23910 at 5833.055 kb on + strand, within CA265_RS23910 at 5833.117 kb on + strand, within CA265_RS23910 at 5833.126 kb on - strand, within CA265_RS23910 at 5833.304 kb on + strand, within CA265_RS23910 at 5833.304 kb on + strand, within CA265_RS23910 at 5833.304 kb on + strand, within CA265_RS23910 at 5833.305 kb on - strand, within CA265_RS23910 at 5833.378 kb on + strand, within CA265_RS23910 at 5833.379 kb on - strand, within CA265_RS23910 at 5833.381 kb on + strand, within CA265_RS23910 at 5833.381 kb on + strand, within CA265_RS23910 at 5833.398 kb on + strand, within CA265_RS23910 at 5833.404 kb on - strand, within CA265_RS23910 at 5833.425 kb on - strand at 5833.459 kb on - strand at 5833.568 kb on - strand at 5833.624 kb on + strand at 5833.633 kb on + strand at 5833.718 kb on - strand, within CA265_RS23915 at 5833.753 kb on - strand, within CA265_RS23915 at 5833.753 kb on - strand, within CA265_RS23915 at 5833.798 kb on + strand, within CA265_RS23915 at 5833.917 kb on + strand, within CA265_RS23915 at 5833.918 kb on - strand, within CA265_RS23915 at 5833.918 kb on - strand, within CA265_RS23915 at 5833.918 kb on - strand, within CA265_RS23915 at 5833.976 kb on - strand, within CA265_RS23915 at 5834.015 kb on + strand, within CA265_RS23915 at 5834.047 kb on - strand, within CA265_RS23915 at 5834.047 kb on - strand, within CA265_RS23915 at 5834.122 kb on - strand, within CA265_RS23915 at 5834.174 kb on + strand, within CA265_RS23915 at 5834.180 kb on - strand at 5834.201 kb on + strand at 5834.202 kb on - strand at 5834.202 kb on - strand at 5834.238 kb on + strand at 5834.239 kb on - strand at 5834.362 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,832,592 - CA265_RS23910 0.38 +0.3 5,832,596 - CA265_RS23910 0.38 -0.1 5,832,625 - CA265_RS23910 0.40 +0.8 5,832,636 + CA265_RS23910 0.41 -0.3 5,832,636 + CA265_RS23910 0.41 +1.4 5,832,637 - CA265_RS23910 0.41 -0.3 5,832,637 - CA265_RS23910 0.41 +0.1 5,832,816 + CA265_RS23910 0.52 -1.1 5,832,816 + CA265_RS23910 0.52 +0.4 5,832,930 + CA265_RS23910 0.60 +0.3 5,832,957 + CA265_RS23910 0.61 -0.3 5,833,019 + CA265_RS23910 0.65 -0.4 5,833,051 - CA265_RS23910 0.67 +1.1 5,833,051 - CA265_RS23910 0.67 -1.1 5,833,051 - CA265_RS23910 0.67 -0.0 5,833,051 - CA265_RS23910 0.67 -0.3 5,833,051 - CA265_RS23910 0.67 +0.6 5,833,055 + CA265_RS23910 0.68 -1.0 5,833,117 + CA265_RS23910 0.72 +0.7 5,833,126 - CA265_RS23910 0.72 +0.6 5,833,304 + CA265_RS23910 0.83 +0.1 5,833,304 + CA265_RS23910 0.83 -0.1 5,833,304 + CA265_RS23910 0.83 -0.2 5,833,305 - CA265_RS23910 0.83 +0.5 5,833,378 + CA265_RS23910 0.88 -0.5 5,833,379 - CA265_RS23910 0.88 -0.0 5,833,381 + CA265_RS23910 0.88 -0.6 5,833,381 + CA265_RS23910 0.88 -0.1 5,833,398 + CA265_RS23910 0.89 +0.1 5,833,404 - CA265_RS23910 0.90 -0.3 5,833,425 - +0.1 5,833,459 - +0.4 5,833,568 - +0.9 5,833,624 + +0.0 5,833,633 + -1.6 5,833,718 - CA265_RS23915 0.21 +0.5 5,833,753 - CA265_RS23915 0.26 -0.1 5,833,753 - CA265_RS23915 0.26 +0.8 5,833,798 + CA265_RS23915 0.33 +0.4 5,833,917 + CA265_RS23915 0.51 +0.4 5,833,918 - CA265_RS23915 0.51 -0.1 5,833,918 - CA265_RS23915 0.51 +0.5 5,833,918 - CA265_RS23915 0.51 -0.2 5,833,976 - CA265_RS23915 0.60 +0.2 5,834,015 + CA265_RS23915 0.66 +2.4 5,834,047 - CA265_RS23915 0.71 +0.8 5,834,047 - CA265_RS23915 0.71 +0.6 5,834,122 - CA265_RS23915 0.82 +0.4 5,834,174 + CA265_RS23915 0.90 -2.8 5,834,180 - +0.5 5,834,201 + -2.1 5,834,202 - +0.1 5,834,202 - +0.1 5,834,238 + +0.7 5,834,239 - +0.8 5,834,362 + -0.2
Or see this region's nucleotide sequence